PDB Chemical Component SB4

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SB4

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CA1 CA2 1.546 1.531
CA1 CA6 1.551 1.531
CA1 H11 1.114 1.090
CA1 H12 1.115 1.090
CA2 NA3 1.514 1.466
CA2 H21 1.116 1.089
CA2 H22 1.115 1.090
NA3 CA4 1.511 1.467
NA3 HN3 1.020 1.009
CA4 CA5 1.555 1.529
CA4 H41 1.116 1.089
CA4 H42 1.115 1.089
CA5 CA6 1.565 1.532
CA5 H51 1.116 1.091
CA5 H52 1.115 1.090
CA6 ND1 1.508 1.465
CA6 H6 1.116 1.089
CB1 CB2 1.412 1.379
CB1 CB6 1.442 1.395
CB1 HB1 1.103 1.080
CB2 CB3 1.409 1.385
CB2 HB2 1.104 1.080
CB3 CB4 1.419 1.385
CB3 FB7 1.357 1.351
CB4 CB5 1.416 1.379
CB4 HB4 1.103 1.080
CB5 CB6 1.436 1.394
CB5 HB5 1.103 1.080
CB6 CD4 1.436 1.481
CC1 CC2 1.449 1.401
CC1 CC6 1.425 1.382
CC1 HC1 1.103 1.080
CC2 NC3 1.374 1.333
CC2 CD5 1.447 1.473
NC3 CC4 1.331 1.323
CC4 NC5 1.331 1.324
CC4 NC7 1.308 1.384
NC5 CC6 1.355 1.324
CC6 HC6 1.103 1.080
NC7 HN71 1.020 0.970
NC7 HN72 1.020 0.970
ND1 CD2 1.385 1.349
ND1 CD5 1.430 1.378
CD2 ND3 1.349 1.304
CD2 H2 1.103 1.080
ND3 CD4 1.401 1.344
CD4 CD5 1.491 1.384

Bond Angles for SB4

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA2 CA1 CA6 110.8 109.2
CA2 CA1 H11 111.8 109.5
CA2 CA1 H12 111.8 109.4
CA1 CA2 NA3 113.9 109.8
CA1 CA2 H21 110.6 109.4
CA1 CA2 H22 110.5 109.5
CA6 CA1 H11 111.7 109.5
CA6 CA1 H12 111.7 109.6
CA1 CA6 CA5 110.9 108.9
CA1 CA6 ND1 109.3 109.6
CA1 CA6 H6 109.9 109.7
H11 CA1 H12 98.7 109.6
NA3 CA2 H21 110.6 109.4
NA3 CA2 H22 110.6 109.4
CA2 NA3 CA4 117.0 107.3
CA2 NA3 HN3 109.5 106.7
H21 CA2 H22 99.7 109.4
CA4 NA3 HN3 109.5 106.7
NA3 CA4 CA5 111.9 109.8
NA3 CA4 H41 111.3 109.4
NA3 CA4 H42 111.3 109.4
CA5 CA4 H41 111.2 109.4
CA5 CA4 H42 111.3 109.5
CA4 CA5 CA6 114.1 109.2
CA4 CA5 H51 110.5 109.5
CA4 CA5 H52 110.6 109.5
H41 CA4 H42 99.1 109.4
CA6 CA5 H51 110.5 109.5
CA6 CA5 H52 110.5 109.5
CA5 CA6 ND1 113.0 109.5
CA5 CA6 H6 105.9 109.6
H51 CA5 H52 99.7 109.5
ND1 CA6 H6 107.7 109.6
CA6 ND1 CD2 128.8 126.4
CA6 ND1 CD5 132.3 126.3
CB2 CB1 CB6 121.1 119.9
CB2 CB1 HB1 118.4 120.0
CB1 CB2 CB3 119.9 120.1
CB1 CB2 HB2 120.2 120.0
CB6 CB1 HB1 120.5 120.0
CB1 CB6 CB5 117.6 119.7
CB1 CB6 CD4 122.8 120.1
CB3 CB2 HB2 119.9 119.9
CB2 CB3 CB4 120.5 120.2
CB2 CB3 FB7 119.6 119.9
CB4 CB3 FB7 119.9 119.9
CB3 CB4 CB5 119.8 120.1
CB3 CB4 HB4 120.2 119.9
CB5 CB4 HB4 120.0 120.0
CB4 CB5 CB6 121.0 119.9
CB4 CB5 HB5 118.8 120.0
CB6 CB5 HB5 120.2 120.0
CB5 CB6 CD4 119.5 120.2
CB6 CD4 ND3 120.7 126.3
CB6 CD4 CD5 130.7 126.3
CC2 CC1 CC6 116.0 118.4
CC2 CC1 HC1 122.8 120.8
CC1 CC2 NC3 119.3 118.9
CC1 CC2 CD5 121.8 120.5
CC6 CC1 HC1 121.2 120.7
CC1 CC6 NC5 121.8 119.3
CC1 CC6 HC6 121.7 120.3
NC3 CC2 CD5 118.9 120.6
CC2 NC3 CC4 119.1 120.6
CC2 CD5 ND1 122.5 127.0
CC2 CD5 CD4 128.8 126.9
NC3 CC4 NC5 125.7 121.8
NC3 CC4 NC7 117.1 119.1
NC5 CC4 NC7 117.2 119.1
CC4 NC5 CC6 118.1 121.0
CC4 NC7 HN71 117.1 120.0
CC4 NC7 HN72 109.5 120.0
NC5 CC6 HC6 116.5 120.3
HN71 NC7 HN72 109.4 120.0
CD2 ND1 CD5 99.0 107.3
ND1 CD2 ND3 122.5 109.6
ND1 CD2 H2 120.1 125.2
ND1 CD5 CD4 108.8 106.1
ND3 CD2 H2 117.4 125.2
CD2 ND3 CD4 101.2 109.6
ND3 CD4 CD5 108.6 107.4

Torsion Angles for SB4

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CA6 CA1 CA2 H11 234.7 119.9
CA6 CA1 CA2 H12 125.3 240.0
CA2 CA1 CA6 CA5 54.1 55.6
CA2 CA1 CA6 ND1 179.3 175.4
CA2 CA1 CA6 H6 297.3 295.7
H11 CA1 CA2 H12 250.5 120.2
NA3 CA2 CA1 H21 234.7 240.0
NA3 CA2 CA1 H22 125.3 120.1
CA1 CA2 NA3 CA4 47.4 65.6
CA1 CA2 NA3 HN3 282.1 179.7
H21 CA2 CA1 H22 250.5 240.2
CA2 CA1 CA6 H11 125.3 240.1
CA2 CA1 CA6 H12 234.7 119.9
CA6 CA1 CA2 NA3 308.6 298.6
CA6 CA1 CA2 H21 73.8 58.6
CA6 CA1 CA2 H22 183.3 178.5
H11 CA1 CA6 H12 109.4 239.7
CA4 CA5 CA6 CA1 306.9 304.4
CA1 CA6 CA5 H51 181.7 64.3
CA1 CA6 CA5 H52 72.2 184.4
CA5 CA6 CA1 ND1 234.8 240.2
CA5 CA6 CA1 H6 116.8 119.9
ND1 CA6 CA1 H6 242.0 239.7
CA1 CA6 ND1 CD2 261.9 300.1
CA1 CA6 ND1 CD5 81.4 120.1
CA2 CA1 H11 CA6 235.2 119.7
CA2 CA1 H11 H12 117.7 239.9
H11 CA1 CA2 NA3 73.8 178.7
H11 CA1 CA2 H21 199.1 298.8
H11 CA1 CA2 H22 308.6 58.6
CA6 CA1 H11 H12 242.5 120.2
H11 CA1 CA6 CA5 288.8 175.5
H11 CA1 CA6 ND1 54.0 295.3
H11 CA1 CA6 H6 172.0 55.5
CA2 CA1 H12 CA6 124.8 240.2
CA2 CA1 H12 H11 242.3 120.1
H12 CA1 CA2 NA3 183.3 58.6
H12 CA1 CA2 H21 308.6 178.6
H12 CA1 CA2 H22 58.0 298.4
CA6 CA1 H12 H11 117.5 239.8
H12 CA1 CA6 CA5 179.4 295.7
H12 CA1 CA6 ND1 304.6 55.5
H12 CA1 CA6 H6 62.6 175.8
NA3 CA2 CA1 CA6 308.6 298.6
NA3 CA2 CA1 H11 73.8 178.7
NA3 CA2 CA1 H12 183.3 58.6
CA1 CA2 NA3 H21 125.2 120.0
CA1 CA2 NA3 H22 234.8 239.9
H21 CA2 NA3 H22 109.5 119.9
CA4 NA3 CA2 HN3 125.2 245.9
CA2 NA3 CA4 CA5 316.2 294.4
CA2 NA3 CA4 H41 81.4 54.5
CA2 NA3 CA4 H42 190.9 174.2
H21 CA2 CA1 CA6 73.8 58.6
H21 CA2 CA1 H11 199.1 298.8
H21 CA2 CA1 H12 308.6 178.6
CA1 CA2 H21 NA3 232.9 239.7
CA1 CA2 H21 H22 116.4 119.9
NA3 CA2 H21 H22 243.5 240.1
H21 CA2 NA3 CA4 282.1 305.6
H21 CA2 NA3 HN3 156.9 59.7
H22 CA2 CA1 CA6 183.3 178.5
H22 CA2 CA1 H11 308.6 58.6
H22 CA2 CA1 H12 58.0 298.4
CA1 CA2 H22 NA3 127.1 120.3
CA1 CA2 H22 H21 243.6 240.2
NA3 CA2 H22 H21 116.5 119.9
H22 CA2 NA3 CA4 172.6 185.7
H22 CA2 NA3 HN3 47.4 299.8
CA4 NA3 CA2 H21 282.1 305.6
CA4 NA3 CA2 H22 172.6 185.7
CA2 NA3 CA4 HN3 234.8 114.0
CA5 CA4 NA3 H41 234.8 239.9
CA5 CA4 NA3 H42 125.3 120.2
NA3 CA4 CA5 CA6 46.7 61.4
NA3 CA4 CA5 H51 171.9 301.5
NA3 CA4 CA5 H52 281.4 181.3
H41 CA4 NA3 H42 250.5 240.2
HN3 NA3 CA2 H21 156.9 59.7
HN3 NA3 CA2 H22 47.4 299.8
CA2 NA3 HN3 CA4 129.5 245.5
HN3 NA3 CA4 CA5 81.4 180.4
HN3 NA3 CA4 H41 206.6 300.4
HN3 NA3 CA4 H42 316.1 60.2
CA1 CA6 CA5 CA4 306.9 304.4
CA5 CA4 NA3 HN3 81.4 180.4
NA3 CA4 CA5 H41 125.3 120.1
NA3 CA4 CA5 H42 234.7 239.9
H41 CA4 CA5 H42 109.4 119.8
CA6 CA5 CA4 H51 234.8 119.9
CA6 CA5 CA4 H52 125.3 240.1
CA4 CA5 CA6 ND1 183.8 184.6
CA4 CA5 CA6 H6 66.1 64.3
H51 CA5 CA4 H52 250.5 120.1
H41 CA4 NA3 HN3 206.6 300.4
NA3 CA4 H41 CA5 234.4 239.7
NA3 CA4 H41 H42 117.2 119.8
CA5 CA4 H41 H42 242.8 240.1
H41 CA4 CA5 CA6 281.4 301.3
H41 CA4 CA5 H51 46.7 181.4
H41 CA4 CA5 H52 156.1 61.3
H42 CA4 NA3 HN3 316.1 60.2
NA3 CA4 H42 CA5 125.6 120.3
NA3 CA4 H42 H41 242.8 240.2
CA5 CA4 H42 H41 117.1 119.9
H42 CA4 CA5 CA6 172.0 181.5
H42 CA4 CA5 H51 297.2 61.6
H42 CA4 CA5 H52 46.7 301.4
CA5 CA6 CA1 H11 288.8 175.5
CA5 CA6 CA1 H12 179.4 295.7
CA1 CA6 CA5 ND1 123.1 119.8
CA1 CA6 CA5 H6 240.8 240.1
CA6 CA5 CA4 H41 281.4 301.3
CA6 CA5 CA4 H42 172.0 181.5
CA4 CA5 CA6 H51 125.2 240.1
CA4 CA5 CA6 H52 234.7 120.0
H51 CA5 CA6 H52 109.4 239.9
ND1 CA6 CA5 H6 117.7 120.2
CA5 CA6 ND1 CD2 26.0 59.5
CA5 CA6 ND1 CD5 205.5 239.4
H51 CA5 CA4 H41 46.7 181.4
H51 CA5 CA4 H42 297.2 61.6
CA4 CA5 H51 CA6 232.8 119.8
CA4 CA5 H51 H52 116.4 239.8
CA6 CA5 H51 H52 243.7 120.1
H51 CA5 CA6 ND1 58.6 304.5
H51 CA5 CA6 H6 300.9 184.3
H52 CA5 CA4 H41 156.1 61.3
H52 CA5 CA4 H42 46.7 301.4
CA4 CA5 H52 CA6 127.3 240.2
CA4 CA5 H52 H51 243.6 120.1
CA6 CA5 H52 H51 116.3 239.9
H52 CA5 CA6 ND1 309.1 64.6
H52 CA5 CA6 H6 191.5 304.4
ND1 CA6 CA1 H11 54.0 295.3
ND1 CA6 CA1 H12 304.6 55.5
CA1 CA6 ND1 CA5 236.0 240.6
CA1 CA6 ND1 H6 119.4 120.3
ND1 CA6 CA5 H51 58.6 304.5
ND1 CA6 CA5 H52 309.1 64.6
CA5 CA6 ND1 H6 243.4 239.7
CC2 CD5 ND1 CA6 0.4 0.0
CD2 ND1 CA6 CD5 180.5 180.0
CA6 ND1 CD2 ND3 179.3 180.0
CA6 ND1 CD2 H2 359.3 359.9
CA6 ND1 CD5 CD4 180.8 180.3
H6 CA6 CA1 H11 172.0 55.5
H6 CA6 CA1 H12 62.6 175.8
CA1 CA6 H6 CA5 119.9 119.5
CA1 CA6 H6 ND1 241.1 239.7
H6 CA6 CA5 H51 300.9 184.3
H6 CA6 CA5 H52 191.5 304.4
CA5 CA6 H6 ND1 121.2 120.2
H6 CA6 ND1 CD2 142.6 179.8
H6 CA6 ND1 CD5 322.1 359.7
CB6 CB1 CB2 HB1 180.0 179.9
CB2 CB1 CB6 CB5 0.1 0.3
CB2 CB1 CB6 CD4 180.1 180.0
CB3 CB2 CB1 HB2 180.0 180.1
CB1 CB2 CB3 CB4 0.0 359.9
CB1 CB2 CB3 FB7 180.0 180.0
CB2 CB1 CB6 HB1 180.0 180.1
CB6 CB1 CB2 CB3 359.9 0.0
CB6 CB1 CB2 HB2 179.9 180.0
CB4 CB5 CB6 CB1 359.9 359.4
CB1 CB6 CB5 HB5 179.9 179.9
CB5 CB6 CB1 CD4 180.0 180.3
CB1 CB6 CD4 ND3 240.3 320.0
CB1 CB6 CD4 CD5 63.6 139.6
CB2 CB1 HB1 CB6 180.0 179.9
HB1 CB1 CB2 CB3 180.0 180.1
HB1 CB1 CB2 HB2 359.9 0.0
HB1 CB1 CB6 CB5 180.1 180.2
HB1 CB1 CB6 CD4 0.1 359.9
CB3 CB2 CB1 CB6 359.9 0.0
CB3 CB2 CB1 HB1 180.0 180.1
CB1 CB2 CB3 HB2 180.0 179.9
CB4 CB3 CB2 FB7 180.0 179.9
CB2 CB3 CB4 CB5 0.0 359.8
CB2 CB3 CB4 HB4 180.0 180.1
HB2 CB2 CB1 CB6 179.9 180.0
HB2 CB2 CB1 HB1 359.9 0.0
CB1 CB2 HB2 CB3 180.0 180.1
HB2 CB2 CB3 CB4 180.0 180.0
HB2 CB2 CB3 FB7 0.0 0.1
CB4 CB3 CB2 HB2 180.0 180.0
CB2 CB3 CB4 FB7 180.0 180.1
CB5 CB4 CB3 HB4 180.0 179.7
CB3 CB4 CB5 CB6 0.0 0.5
CB3 CB4 CB5 HB5 180.0 180.0
FB7 CB3 CB2 HB2 0.0 0.1
CB2 CB3 FB7 CB4 180.0 179.9
FB7 CB3 CB4 CB5 180.0 179.7
FB7 CB3 CB4 HB4 360.0 360.0
CB1 CB6 CB5 CB4 359.9 359.4
CB5 CB4 CB3 FB7 180.0 179.7
CB3 CB4 CB5 HB4 180.0 180.3
CB6 CB5 CB4 HB5 180.0 180.5
CB4 CB5 CB6 CD4 179.9 179.7
HB4 CB4 CB3 FB7 360.0 360.0
CB3 CB4 HB4 CB5 180.0 179.7
HB4 CB4 CB5 CB6 180.0 180.2
HB4 CB4 CB5 HB5 0.0 359.8
CB5 CB6 CB1 HB1 180.1 180.2
CB1 CB6 CB5 CD4 180.0 179.7
CB6 CB5 CB4 HB4 180.0 180.2
CB4 CB5 CB6 HB5 180.0 179.5
CB5 CB6 CD4 ND3 60.3 139.7
CB5 CB6 CD4 CD5 243.6 319.3
HB5 CB5 CB4 HB4 0.0 359.8
CB4 CB5 HB5 CB6 180.0 180.5
HB5 CB5 CB6 CD4 359.9 0.2
CD4 CB6 CB1 HB1 0.1 359.9
CB1 CB6 CD4 CB5 180.0 180.3
CD4 CB6 CB5 HB5 359.9 0.2
CC2 CD5 CD4 CB6 357.0 0.2
ND1 CD5 CD4 CB6 176.6 180.0
CD2 ND3 CD4 CB6 182.8 180.1
ND3 CD4 CB6 CD5 176.7 180.4
CC6 CC1 CC2 HC1 180.0 180.0
CC2 CC1 CC6 NC5 359.8 360.0
CC2 CC1 CC6 HC6 179.8 180.0
NC3 CC2 CC1 CD5 179.9 179.8
CC1 CC2 NC3 CC4 359.9 0.5
CC1 CC2 CD5 ND1 225.9 320.0
CC1 CC2 CD5 CD4 45.5 139.7
CC2 CC1 CC6 HC1 180.0 180.0
CC6 CC1 CC2 NC3 0.2 359.7
CC6 CC1 CC2 CD5 180.3 179.9
CC4 NC5 CC6 CC1 0.1 0.1
NC5 CC6 CC1 HC6 180.0 180.0
CC2 CC1 HC1 CC6 180.0 180.0
HC1 CC1 CC2 NC3 180.2 179.7
HC1 CC1 CC2 CD5 0.3 360.0
HC1 CC1 CC6 NC5 179.8 180.0
HC1 CC1 CC6 HC6 359.8 360.0
NC3 CC2 CC1 CC6 0.2 359.7
NC3 CC2 CC1 HC1 180.2 179.7
CC1 CC2 NC3 CD5 180.1 180.2
NC3 CC2 CD5 ND1 45.9 140.3
NC3 CC2 CD5 CD4 225.6 320.0
CC2 NC3 CC4 NC5 359.9 359.5
CC2 NC3 CC4 NC7 179.9 179.7
CA6 ND1 CD5 CC2 0.4 0.0
CB6 CD4 CD5 CC2 357.0 0.2
CD5 CC2 CC1 CC6 180.3 179.9
CD5 CC2 CC1 HC1 0.3 360.0
CC1 CC2 CD5 NC3 179.9 179.8
CD5 CC2 NC3 CC4 179.9 180.3
CD2 ND1 CD5 CC2 180.1 180.0
ND1 CD5 CC2 CD4 180.4 180.3
ND3 CD4 CD5 CC2 180.0 179.9
CC4 NC3 CC2 CD5 179.9 180.3
NC5 CC4 NC3 NC7 180.0 179.8
NC3 CC4 NC5 CC6 0.1 0.2
NC3 CC4 NC7 HN71 180.0 179.7
NC3 CC4 NC7 HN72 54.7 359.5
CC1 CC6 NC5 CC4 0.1 0.1
NC3 CC4 NC5 NC7 180.0 180.2
NC5 CC4 NC7 HN71 359.9 359.9
NC5 CC4 NC7 HN72 234.7 179.7
CC4 NC5 CC6 HC6 180.1 180.0
NC3 CC4 NC7 NC5 180.0 179.8
NC7 CC4 NC5 CC6 180.1 180.0
HN71 NC7 CC4 HN72 125.2 180.2
NC5 CC6 CC1 HC1 179.8 180.0
CC1 CC6 NC5 HC6 180.0 180.0
CC6 NC5 CC4 NC7 180.1 180.0
HC6 CC6 CC1 HC1 359.8 360.0
CC1 CC6 HC6 NC5 180.0 180.0
CC4 NC7 HN71 HN72 234.8 179.8
CC4 NC7 HN72 HN71 129.6 180.2
CD2 ND1 CA6 H6 142.6 179.8
CA6 ND1 CD2 CD5 179.6 180.0
CC2 CD5 ND1 CD2 180.1 180.0
CD2 ND1 CD5 CD4 0.4 0.2
ND3 CD2 ND1 H2 180.0 180.1
ND1 CD2 ND3 CD4 0.1 359.8
CD5 ND1 CA6 H6 322.1 359.7
CA6 ND1 CD5 CD2 180.4 180.0
CB6 CD4 CD5 ND1 176.6 180.0
CC2 CD5 ND1 CD4 179.7 179.8
CD5 ND1 CD2 ND3 359.7 0.0
CD5 ND1 CD2 H2 179.7 179.9
ND3 CD4 CD5 ND1 359.6 359.6
CB6 CD4 ND3 CD2 182.8 180.1
ND3 CD2 ND1 CD5 359.7 0.0
ND1 CD2 ND3 H2 180.0 179.9
CD2 ND3 CD4 CD5 0.2 0.4
H2 CD2 ND1 CD5 179.7 179.9
ND1 CD2 H2 ND3 180.0 180.1
H2 CD2 ND3 CD4 180.1 179.8
CB6 CD4 ND3 CD5 182.7 179.7
CC2 CD5 CD4 ND3 180.0 179.9
ND1 CD5 CD4 ND3 359.6 359.6
CD4 ND3 CD2 H2 180.1 179.8
CB6 CD4 CD5 ND3 177.0 180.3
CC2 CD5 CD4 ND1 180.3 180.2