PDB Chemical Component SAV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SAV

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C4	1.414	1.400
N1	C5	1.407	1.384
N3	C8	1.405	1.386
N3	C9	1.420	1.397
C4	C17	1.380	1.388
C4	C3	1.382	1.388
C5	N2	1.338	1.326
C5	N6	1.342	1.325
C6	C7	1.370	1.381
C6	N2	1.329	1.325
C7	C8	1.372	1.398
C8	N6	1.334	1.328
C10	C9	1.380	1.395
C10	C11	1.377	1.364
C13	C12	1.421	1.460
C13	C14	1.478	1.507
C13	N4	1.341	1.302
C15	C12	1.381	1.409
C15	N5	1.370	1.370
C15	C16	1.374	1.391
C17	C18	1.382	1.386
C20	C2	1.381	1.390
C20	C18	1.384	1.390
C20	O3	1.396	1.362
C21	O3	1.432	1.429
C1	O1	1.432	1.428
O1	C2	1.389	1.360
C2	C3	1.379	1.386
C9	C16	1.378	1.384
C11	C12	1.377	1.399
N4	N5	1.352	1.400
C18	O2	1.384	1.360
O2	C19	1.418	1.430
N1	HN1	1.000	0.970
N3	HN3	1.000	0.970
C6	H6	1.080	1.080
C7	H7	1.080	1.080
C10	H10	1.080	1.080
C17	H17	1.080	1.080
C21	H21	1.100	1.090
C21	H21A	1.100	1.090
C21	H21B	1.100	1.090
C1	H1	1.100	1.090
C1	H1A	1.100	1.091
C1	H1B	1.100	1.089
C3	H3	1.080	1.080
C11	H11	1.080	1.080
C14	H14	1.101	1.090
C14	H14A	1.100	1.090
C14	H14B	1.100	1.090
N5	HN5	1.000	0.970
C16	H16	1.080	1.080
C19	H19	1.100	1.090
C19	H19A	1.100	1.090
C19	H19B	1.100	1.090

Bond Angles for SAV

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C4	N1	C5	124.8	120.1
N1	C4	C17	118.2	119.9
N1	C4	C3	123.4	120.0
C4	N1	HN1	117.6	120.0
N1	C5	N2	115.9	119.2
N1	C5	N6	119.6	119.2
C5	N1	HN1	117.6	120.0
C8	N3	C9	123.3	120.0
N3	C8	C7	117.3	120.5
N3	C8	N6	123.1	120.5
C8	N3	HN3	118.3	120.0
N3	C9	C10	120.4	119.8
N3	C9	C16	119.6	119.7
C9	N3	HN3	118.4	120.0
C17	C4	C3	118.4	120.1
C4	C17	C18	121.2	120.0
C4	C17	H17	119.4	120.0
C4	C3	C2	120.5	120.0
C4	C3	H3	119.7	120.0
N2	C5	N6	124.4	121.6
C5	N2	C6	115.3	120.9
C5	N6	C8	119.1	120.6
C7	C6	N2	124.0	119.3
C6	C7	C8	117.5	118.5
C7	C6	H6	118.0	120.4
C6	C7	H7	121.2	120.8
N2	C6	H6	118.0	120.3
C7	C8	N6	119.6	119.0
C8	C7	H7	121.2	120.7
C9	C10	C11	123.3	120.6
C10	C9	C16	120.1	120.5
C9	C10	H10	118.4	119.7
C10	C11	C12	117.0	119.9
C11	C10	H10	118.4	119.7
C10	C11	H11	121.5	120.1
C12	C13	C14	128.3	126.1
C12	C13	N4	111.4	107.8
C13	C12	C15	105.6	106.2
C13	C12	C11	135.2	133.9
C14	C13	N4	120.3	126.1
C13	C14	H14	109.5	109.5
C13	C14	H14A	109.5	109.5
C13	C14	H14B	109.5	109.5
C13	N4	N5	103.9	110.1
C12	C15	N5	105.2	106.8
C12	C15	C16	124.3	119.5
C15	C12	C11	119.2	119.9
N5	C15	C16	130.6	133.7
C15	N5	N4	113.9	109.1
C15	N5	HN5	123.0	125.5
C15	C16	C9	116.2	119.7
C15	C16	H16	122.0	120.2
C17	C18	C20	120.4	120.0
C17	C18	O2	119.5	120.0
C18	C17	H17	119.4	120.0
C2	C20	C18	118.4	120.0
C2	C20	O3	118.9	120.0
C20	C2	O1	119.6	120.0
C20	C2	C3	121.1	120.0
C18	C20	O3	122.7	120.0
C20	C18	O2	120.1	120.0
C20	O3	C21	105.9	117.0
O3	C21	H21	109.5	109.4
O3	C21	H21A	109.5	109.5
O3	C21	H21B	109.5	109.5
C1	O1	C2	105.4	117.0
O1	C1	H1	109.5	109.4
O1	C1	H1A	109.5	109.5
O1	C1	H1B	109.4	109.5
O1	C2	C3	119.3	120.0
C2	C3	H3	119.7	120.0
C9	C16	H16	121.9	120.2
C12	C11	H11	121.5	120.1
N4	N5	HN5	123.0	125.4
C18	O2	C19	108.4	117.0
O2	C19	H19	109.5	109.5
O2	C19	H19A	109.5	109.5
O2	C19	H19B	109.4	109.4
H21	C21	H21A	109.5	109.5
H21	C21	H21B	109.5	109.4
H21A	C21	H21B	109.5	109.5
H1	C1	H1A	109.5	109.4
H1	C1	H1B	109.5	109.5
H1A	C1	H1B	109.5	109.5
H14	C14	H14A	109.4	109.5
H14	C14	H14B	109.4	109.5
H14A	C14	H14B	109.5	109.4
H19	C19	H19A	109.5	109.5
H19	C19	H19B	109.4	109.5
H19A	C19	H19B	109.5	109.5

Torsion Angles for SAV

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C4	N1	C5	N2	181.2	354.2
C4	N1	C5	N6	1.1	173.9
C5	N1	C4	HN1	180.0	180.4
C17	C4	N1	C3	180.3	180.2
N1	C4	C17	C18	180.0	180.0
N1	C4	C17	H17	0.1	0.0
N1	C4	C3	C2	179.8	180.0
N1	C4	C3	H3	359.8	359.9
C5	N1	C4	C17	149.4	140.9
C5	N1	C4	C3	329.0	320.7
C4	N1	C5	HN1	180.0	179.6
N2	C5	N1	N6	180.1	180.2
N1	C5	N2	C6	180.4	180.0
N1	C5	N6	C8	179.3	180.0
C8	N3	C9	C10	300.1	143.1
C8	N3	C9	C16	120.4	323.0
C9	N3	C8	HN3	180.0	180.0
C5	N6	C8	N3	180.3	180.2
C6	C7	C8	N3	180.1	180.0
C7	C8	N3	N6	179.7	180.3
N3	C8	C7	H7	0.1	359.8
C9	N3	C8	C7	190.6	175.3
C9	N3	C8	N6	10.9	355.1
C8	N3	C9	HN3	180.0	180.0
N3	C9	C10	C11	180.1	180.0
C10	C9	N3	C16	179.7	180.1
N3	C9	C10	H10	0.1	359.7
C15	C16	C9	N3	179.9	180.1
N3	C9	C16	H16	359.9	0.0
C17	C4	N1	C5	149.4	140.9
N1	C4	C17	C3	179.7	179.8
C17	C4	N1	HN1	329.4	320.5
C17	C4	C3	C2	359.5	359.8
C17	C4	C3	H3	179.5	179.7
C4	C17	C18	C20	0.1	0.1
C4	C17	C18	O2	179.5	180.0
C18	C17	C4	H17	180.0	180.0
C3	C4	N1	C5	329.0	320.7
N1	C4	C3	C17	180.3	180.2
C3	C4	N1	HN1	149.0	140.3
C3	C4	C17	C18	0.3	0.2
C3	C4	C17	H17	180.3	180.2
C20	C2	C3	C4	0.2	360.0
O1	C2	C3	C4	180.7	180.2
C2	C3	C4	H3	180.0	180.0
N1	C5	N2	N6	179.9	179.8
N2	C5	N1	HN1	1.2	174.6
N2	C5	N6	C8	359.1	359.8
C7	C6	N2	C5	359.9	360.0
C5	N2	C6	H6	179.9	179.8
N1	C5	N6	N2	180.2	180.2
N6	C5	N1	HN1	181.1	354.3
N3	C8	N6	C5	180.3	180.2
N6	C5	N2	C6	0.6	0.3
C7	C8	N6	C5	0.7	360.0
N3	C8	C7	C6	180.1	180.0
C5	N2	C6	C7	359.9	360.0
N2	C6	C7	H6	180.0	179.8
C6	C7	C8	N6	359.8	0.3
C8	C7	C6	H7	180.0	179.7
C6	N2	C5	N6	0.6	0.3
N2	C6	C7	C8	360.0	359.8
C7	C6	N2	H6	180.0	180.2
N2	C6	C7	H7	179.9	180.0
C7	C8	N3	C9	190.6	175.3
N3	C8	C7	N6	180.3	179.7
C7	C8	N3	HN3	10.6	355.3
C5	N6	C8	C7	0.7	360.0
C8	C7	C6	N2	360.0	359.8
C8	C7	C6	H6	179.9	180.0
C6	C7	C8	H7	180.0	180.3
N6	C8	N3	C9	10.9	355.1
N3	C8	N6	C7	179.7	180.3
N6	C8	N3	HN3	190.9	175.0
N6	C8	C7	H7	179.8	180.0
N3	C9	C10	C16	180.3	179.9
C10	C9	N3	HN3	120.1	323.1
C9	C10	C11	C12	0.2	360.0
C11	C10	C9	H10	180.0	180.3
C9	C10	C11	H11	180.2	180.0
C15	C16	C9	C10	0.1	0.0
C10	C9	C16	H16	180.1	180.0
C11	C10	C9	C16	359.8	0.0
C9	C10	C11	H10	180.0	179.7
C13	C12	C11	C10	180.1	180.0
C15	C12	C11	C10	359.9	360.0
C12	C11	C10	H11	180.0	180.0
C10	C11	C12	C13	180.1	180.0
C14	C13	C12	N4	180.4	180.0
C12	C13	C14	H14	293.2	90.0
C12	C13	C14	H14A	53.2	210.0
C12	C13	C14	H14B	173.2	330.0
C12	C13	N4	N5	0.1	0.0
C13	C12	C15	N5	0.0	359.9
C13	C12	C15	C16	179.9	180.0
C15	C12	C13	C11	180.2	180.1
C13	C12	C11	H11	0.1	0.0
C12	C13	C14	N4	179.6	180.0
C14	C13	C12	C15	180.3	180.1
C14	C13	C12	C11	0.1	0.0
C14	C13	N4	N5	179.8	180.0
H14	C14	C13	H14A	240.0	240.0
H14	C14	C13	H14B	120.0	120.0
H14A	C14	C13	H14B	240.0	240.1
C12	C13	N4	C14	180.3	180.0
N4	C13	C12	C15	359.9	0.0
N4	C13	C12	C11	179.7	180.0
N4	C13	C14	H14	113.6	270.0
N4	C13	C14	H14A	233.6	30.1
N4	C13	C14	H14B	353.6	150.0
C15	N5	N4	C13	359.9	359.9
C13	N4	N5	HN5	179.9	180.0
C10	C11	C12	C15	359.9	360.0
C15	C12	C13	C14	180.3	180.1
C15	C12	C13	N4	359.9	0.0
C13	C12	C15	C11	179.9	180.0
N5	C15	C12	C16	180.1	179.9
C12	C15	N5	N4	0.1	0.1
C12	C15	N5	HN5	180.1	180.0
C12	C15	C16	C9	359.9	359.9
C12	C15	C16	H16	179.9	180.0
C15	C12	C11	H11	179.9	180.0
C13	N4	N5	C15	359.9	359.9
C12	C15	N5	C16	179.9	180.1
N5	C15	C12	C11	180.2	180.0
N5	C15	C16	C9	179.8	180.1
N5	C15	C16	H16	359.8	0.1
N4	N5	C15	HN5	180.0	180.1
N3	C9	C16	C15	179.9	180.1
C10	C9	C16	C15	0.1	0.0
C12	C15	C16	N5	180.1	179.9
C16	C15	C12	C11	0.1	0.1
C16	C15	N5	N4	180.1	180.0
C16	C15	N5	HN5	0.2	359.9
C9	C16	C15	H16	180.0	180.0
C18	C17	C4	C3	0.3	0.2
C4	C17	C18	H17	180.0	180.0
C2	C20	C18	C17	359.6	359.7
C17	C18	C20	O3	179.1	180.0
C20	C18	C17	O2	180.6	180.1
C17	C18	O2	C19	41.2	0.0
C4	C3	C2	C20	0.2	360.0
C17	C18	C20	C2	359.6	359.7
C18	C20	C2	O3	179.6	180.3
C2	C20	C18	O2	180.2	179.8
C2	C20	O3	C21	242.5	90.0
C1	O1	C2	C20	111.7	180.0
O1	C2	C20	C3	179.5	179.8
C20	C2	C3	H3	180.2	180.0
C17	C18	C20	O2	179.4	179.9
C20	C18	C17	H17	180.1	180.1
C2	C20	C18	O3	180.5	179.7
C18	C20	C2	O1	179.7	180.1
C18	C20	C2	C3	0.3	0.3
C18	C20	O3	C21	63.0	269.7
C20	C18	O2	C19	220.6	179.9
C2	C20	O3	C18	179.5	180.3
O3	C20	C2	O1	0.2	359.7
O3	C20	C2	C3	180.7	180.0
O3	C20	C18	O2	359.8	0.1
C20	O3	C21	H21	160.9	300.0
C20	O3	C21	H21A	280.9	60.0
C20	O3	C21	H21B	40.9	180.1
H21	C21	O3	H21A	240.0	240.0
H21	C21	O3	H21B	120.0	119.9
H21A	C21	O3	H21B	240.0	239.9
C20	C2	O1	C1	111.7	180.0
C1	O1	C2	C3	291.2	359.8
H1	C1	O1	H1A	240.0	240.1
H1	C1	O1	H1B	120.0	120.0
H1A	C1	O1	H1B	240.0	240.0
C4	C3	C2	O1	180.7	180.2
O1	C2	C20	C18	179.7	180.1
O1	C2	C20	O3	0.2	359.7
C20	C2	O1	C3	180.5	180.2
C2	O1	C1	H1	101.2	300.0
C2	O1	C1	H1A	221.3	60.0
C2	O1	C1	H1B	341.2	180.0
O1	C2	C3	H3	0.7	0.3
C4	C3	C2	H3	180.0	180.0
C3	C2	C20	C18	0.3	0.3
C3	C2	C20	O3	180.7	180.0
C20	C2	C3	O1	179.5	179.8
N3	C9	C16	C10	179.7	180.1
C16	C9	N3	HN3	300.4	143.1
C16	C9	C10	C11	359.8	0.0
C16	C9	C10	H10	179.8	179.7
C15	C16	C9	H16	180.0	180.0
C12	C11	C10	H10	180.2	180.3
C10	C11	C12	H11	180.0	180.0
C11	C12	C13	C14	0.1	0.0
C11	C12	C13	N4	179.7	180.0
C13	C12	C11	C15	180.2	180.1
C11	C12	C15	N5	180.2	180.0
C11	C12	C15	C16	0.1	0.1
N4	N5	C15	C16	180.1	180.0
C15	N5	N4	HN5	180.0	179.9
C17	C18	O2	C20	180.6	180.1
O2	C18	C17	H17	359.5	360.0
O2	C18	C20	O3	359.8	0.1
C18	O2	C19	H19	97.5	300.0
C18	O2	C19	H19A	217.5	60.0
C18	O2	C19	H19B	337.5	180.0
H19	C19	O2	H19A	240.0	240.0
H19	C19	O2	H19B	120.0	120.0
H19A	C19	O2	H19B	240.0	240.0
C4	N1	HN1	C5	180.0	180.4
HN1	N1	C4	C17	329.4	320.5
HN1	N1	C4	C3	149.0	140.3
HN1	N1	C5	N2	1.2	174.6
HN1	N1	C5	N6	181.1	354.3
C8	N3	HN3	C9	180.0	180.0
HN3	N3	C8	C7	10.6	355.3
HN3	N3	C8	N6	190.9	175.0
HN3	N3	C9	C10	120.1	323.1
HN3	N3	C9	C16	300.4	143.1
C7	C6	H6	N2	180.0	179.8
H6	C6	C7	C8	179.9	180.0
H6	C6	C7	H7	359.9	0.2
H7	C7	C6	N2	179.9	180.0
C6	C7	H7	C8	180.0	179.7
H7	C7	C6	H6	359.9	0.2
H7	C7	C8	N6	179.8	180.0
C9	C10	H10	C11	180.0	180.3
H10	C10	C9	C16	179.8	179.7
H10	C10	C11	C12	180.2	180.3
H10	C10	C11	H11	0.2	0.3
H17	C17	C4	C3	180.3	180.2
C4	C17	H17	C18	180.0	180.0
H17	C17	C18	C20	180.1	180.1
H17	C17	C18	O2	359.5	360.0
O3	C21	H21	H21A	120.0	120.0
O3	C21	H21	H21B	240.0	240.0
H21A	C21	H21	H21B	120.0	120.0
O3	C21	H21A	H21	240.0	240.0
O3	C21	H21A	H21B	120.0	120.1
H21	C21	H21A	H21B	240.0	240.0
O3	C21	H21B	H21	120.0	119.9
O3	C21	H21B	H21A	240.0	240.0
H21	C21	H21B	H21A	120.0	120.0
H1	C1	O1	C2	101.2	300.0
O1	C1	H1	H1A	120.0	120.0
O1	C1	H1	H1B	240.0	240.0
H1A	C1	H1	H1B	120.0	120.0
H1A	C1	O1	C2	221.3	60.0
O1	C1	H1A	H1	240.0	240.1
O1	C1	H1A	H1B	120.0	120.0
H1	C1	H1A	H1B	240.0	240.0
H1B	C1	O1	C2	341.2	180.0
O1	C1	H1B	H1	120.0	120.0
O1	C1	H1B	H1A	240.0	240.0
H1	C1	H1B	H1A	120.0	120.0
C4	C3	H3	C2	180.0	180.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C10	H10	0.2	0.3
H14	C14	C13	N4	113.6	270.0
C13	C14	H14	H14A	120.0	120.0
C13	C14	H14	H14B	240.0	239.9
H14A	C14	H14	H14B	120.0	119.9
H14A	C14	C13	N4	233.6	30.1
C13	C14	H14A	H14	240.0	240.0
C13	C14	H14A	H14B	120.0	120.0
H14	C14	H14A	H14B	240.1	240.1
H14B	C14	C13	N4	353.6	150.0
C13	C14	H14B	H14	120.0	120.1
C13	C14	H14B	H14A	240.0	240.0
H14	C14	H14B	H14A	119.9	120.0
HN5	N5	C15	C16	0.2	359.9
C15	N5	HN5	N4	180.0	180.1
C15	C16	H16	C9	180.0	180.0
O2	C19	H19	H19A	120.0	120.0
O2	C19	H19	H19B	240.0	240.0
H19A	C19	H19	H19B	120.0	120.0
O2	C19	H19A	H19	240.0	240.0
O2	C19	H19A	H19B	120.0	120.0
H19	C19	H19A	H19B	240.0	239.9
O2	C19	H19B	H19	120.0	120.0
O2	C19	H19B	H19A	240.0	240.0
H19	C19	H19B	H19A	120.0	120.0