PDB Chemical Component SAQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SAQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C6 |
1.383 |
1.352 |
| N1 |
C2 |
1.361 |
1.360 |
| N3 |
C4 |
1.403 |
1.359 |
| N3 |
C2 |
1.359 |
1.297 |
| C4 |
C5 |
1.396 |
1.417 |
| C4 |
C10 |
1.413 |
1.389 |
| C5 |
C6 |
1.477 |
1.469 |
| C5 |
C7 |
1.413 |
1.393 |
| C6 |
O16 |
1.229 |
1.218 |
| C7 |
C8 |
1.401 |
1.379 |
| C8 |
N12 |
1.371 |
1.389 |
| C8 |
C9 |
1.393 |
1.412 |
| C10 |
C9 |
1.408 |
1.394 |
| N12 |
C13 |
1.371 |
1.365 |
| C13 |
N14 |
1.310 |
1.312 |
| C13 |
N15 |
1.365 |
1.376 |
| C9 |
N14 |
1.370 |
1.357 |
| N15 |
C25 |
1.443 |
1.466 |
| C25 |
C11 |
1.541 |
1.507 |
| C14 |
C11 |
1.539 |
1.333 |
| S1 |
C11 |
1.540 |
1.759 |
| S1 |
C12 |
1.541 |
1.759 |
| C12 |
C131 |
1.539 |
1.334 |
| C131 |
C14 |
2.667 |
1.384 |
| N1 |
HN1 |
1.000 |
0.970 |
| C7 |
H7 |
1.080 |
1.081 |
| C10 |
H10 |
1.080 |
1.080 |
| N12 |
HN12 |
1.000 |
0.969 |
| C2 |
H2 |
1.080 |
1.080 |
| N15 |
HN15 |
1.000 |
0.970 |
| C25 |
H25 |
1.100 |
1.090 |
| C25 |
H25A |
1.100 |
1.090 |
| C12 |
H9 |
1.080 |
1.081 |
| C131 |
H101 |
1.080 |
1.080 |
| C14 |
H11 |
1.080 |
1.079 |
Bond Angles for SAQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
123.1 |
120.7 |
| N1 |
C6 |
C5 |
116.7 |
117.5 |
| N1 |
C6 |
O16 |
117.7 |
121.3 |
| C6 |
N1 |
HN1 |
118.5 |
119.7 |
| N1 |
C2 |
N3 |
120.2 |
123.4 |
| C2 |
N1 |
HN1 |
118.4 |
119.7 |
| N1 |
C2 |
H2 |
119.9 |
118.3 |
| C4 |
N3 |
C2 |
120.5 |
121.6 |
| N3 |
C4 |
C5 |
120.2 |
118.9 |
| N3 |
C4 |
C10 |
117.8 |
121.3 |
| N3 |
C2 |
H2 |
119.9 |
118.3 |
| C5 |
C4 |
C10 |
122.0 |
119.8 |
| C4 |
C5 |
C6 |
118.4 |
118.0 |
| C4 |
C5 |
C7 |
121.8 |
120.4 |
| C4 |
C10 |
C9 |
116.7 |
119.7 |
| C4 |
C10 |
H10 |
121.7 |
120.2 |
| C6 |
C5 |
C7 |
119.7 |
121.6 |
| C5 |
C6 |
O16 |
125.0 |
121.2 |
| C5 |
C7 |
C8 |
114.9 |
119.5 |
| C5 |
C7 |
H7 |
122.6 |
120.2 |
| C7 |
C8 |
N12 |
131.8 |
133.5 |
| C7 |
C8 |
C9 |
124.4 |
120.5 |
| C8 |
C7 |
H7 |
122.5 |
120.2 |
| N12 |
C8 |
C9 |
103.7 |
106.0 |
| C8 |
N12 |
C13 |
108.4 |
107.2 |
| C8 |
N12 |
HN12 |
125.8 |
126.4 |
| C8 |
C9 |
C10 |
120.1 |
120.1 |
| C8 |
C9 |
N14 |
110.8 |
107.0 |
| C10 |
C9 |
N14 |
129.0 |
132.8 |
| C9 |
C10 |
H10 |
121.6 |
120.1 |
| N12 |
C13 |
N14 |
111.0 |
110.0 |
| N12 |
C13 |
N15 |
116.9 |
125.0 |
| C13 |
N12 |
HN12 |
125.8 |
126.4 |
| N14 |
C13 |
N15 |
132.1 |
125.0 |
| C13 |
N14 |
C9 |
105.8 |
109.7 |
| C13 |
N15 |
C25 |
124.3 |
120.0 |
| C13 |
N15 |
HN15 |
104.8 |
120.0 |
| N15 |
C25 |
C11 |
94.5 |
109.5 |
| C25 |
N15 |
HN15 |
104.8 |
120.0 |
| N15 |
C25 |
H25 |
114.8 |
109.5 |
| N15 |
C25 |
H25A |
117.7 |
109.5 |
| C11 |
C25 |
H25 |
114.8 |
109.5 |
| C11 |
C25 |
H25A |
117.7 |
109.5 |
| S1 |
C12 |
C131 |
120.0 |
109.6 |
| S1 |
C12 |
H9 |
120.0 |
125.2 |
| C12 |
C131 |
C14 |
90.0 |
114.9 |
| C131 |
C12 |
H9 |
120.0 |
125.2 |
| C12 |
C131 |
H101 |
135.0 |
122.5 |
| C14 |
C131 |
H101 |
135.0 |
122.6 |
| C131 |
C14 |
H11 |
135.0 |
122.5 |
| H25 |
C25 |
H25A |
98.6 |
109.5 |
Torsion Angles for SAQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
N3 |
8.3 |
0.1 |
| C2 |
N1 |
C6 |
HN1 |
180.0 |
180.2 |
| C6 |
N1 |
C2 |
H2 |
188.3 |
180.1 |
| C4 |
C5 |
C6 |
N1 |
355.0 |
359.9 |
| N1 |
C6 |
C5 |
C7 |
179.3 |
180.1 |
| C5 |
C6 |
N1 |
O16 |
187.8 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
359.3 |
360.0 |
| C2 |
N1 |
C6 |
O16 |
171.4 |
180.0 |
| C6 |
N1 |
C2 |
HN1 |
180.0 |
179.8 |
| C4 |
N3 |
C2 |
N1 |
350.1 |
360.0 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
350.1 |
360.0 |
| C4 |
N3 |
C2 |
H2 |
170.1 |
180.0 |
| C5 |
C4 |
N3 |
C10 |
178.9 |
179.9 |
| N3 |
C4 |
C5 |
C6 |
3.5 |
0.1 |
| N3 |
C4 |
C5 |
C7 |
179.1 |
179.9 |
| N3 |
C4 |
C10 |
C9 |
179.4 |
180.0 |
| N3 |
C4 |
C10 |
H10 |
359.4 |
360.0 |
| N3 |
C2 |
N1 |
HN1 |
188.3 |
180.3 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
4.0 |
360.0 |
| C2 |
N3 |
C4 |
C10 |
185.0 |
180.0 |
| N1 |
C6 |
C5 |
C4 |
355.0 |
359.9 |
| C5 |
C4 |
N3 |
C2 |
4.0 |
360.0 |
| N3 |
C4 |
C5 |
C10 |
181.1 |
180.1 |
| C5 |
C4 |
C10 |
C9 |
0.5 |
0.1 |
| C5 |
C4 |
C10 |
H10 |
180.5 |
180.0 |
| C6 |
C5 |
C4 |
C7 |
184.4 |
180.1 |
| C4 |
C5 |
C6 |
O16 |
183.4 |
179.9 |
| C4 |
C5 |
C7 |
C8 |
3.3 |
0.1 |
| C4 |
C5 |
C7 |
H7 |
183.3 |
180.0 |
| C10 |
C4 |
N3 |
C2 |
185.0 |
180.0 |
| N3 |
C4 |
C10 |
C5 |
178.9 |
179.9 |
| C10 |
C4 |
C5 |
C6 |
182.4 |
180.0 |
| C10 |
C4 |
C5 |
C7 |
357.9 |
359.9 |
| C8 |
C9 |
C10 |
C4 |
359.5 |
0.0 |
| C4 |
C10 |
C9 |
N14 |
184.0 |
180.0 |
| C9 |
C10 |
C4 |
H10 |
180.0 |
180.0 |
| C5 |
C6 |
N1 |
C2 |
359.3 |
360.0 |
| N1 |
C6 |
C5 |
O16 |
171.6 |
180.0 |
| C5 |
C6 |
N1 |
HN1 |
179.2 |
179.8 |
| C6 |
C5 |
C4 |
C10 |
182.4 |
180.0 |
| C4 |
C5 |
C6 |
C7 |
175.7 |
179.9 |
| C6 |
C5 |
C7 |
C8 |
178.9 |
179.9 |
| C6 |
C5 |
C7 |
H7 |
358.8 |
359.8 |
| C7 |
C5 |
C4 |
C10 |
357.9 |
359.9 |
| C4 |
C5 |
C7 |
C6 |
184.5 |
180.1 |
| C7 |
C5 |
C6 |
O16 |
7.7 |
0.1 |
| C5 |
C7 |
C8 |
N12 |
181.5 |
179.9 |
| C5 |
C7 |
C8 |
C9 |
356.6 |
360.0 |
| C8 |
C7 |
C5 |
H7 |
180.0 |
180.1 |
| O16 |
C6 |
N1 |
C2 |
171.4 |
180.0 |
| N1 |
C6 |
O16 |
C5 |
188.5 |
180.0 |
| O16 |
C6 |
N1 |
HN1 |
351.4 |
359.8 |
| O16 |
C6 |
C5 |
C7 |
7.7 |
0.1 |
| C5 |
C7 |
C8 |
H7 |
180.0 |
179.9 |
| N12 |
C8 |
C7 |
C9 |
185.0 |
179.9 |
| C7 |
C8 |
N12 |
C13 |
181.5 |
180.0 |
| C7 |
C8 |
N12 |
HN12 |
1.4 |
0.2 |
| C7 |
C8 |
C9 |
C10 |
2.1 |
360.0 |
| C7 |
C8 |
C9 |
N14 |
178.4 |
180.0 |
| C7 |
C8 |
N12 |
C9 |
175.8 |
180.1 |
| N12 |
C8 |
C7 |
H7 |
1.5 |
360.0 |
| N12 |
C8 |
C9 |
C10 |
178.3 |
180.0 |
| N12 |
C8 |
C9 |
N14 |
354.6 |
0.1 |
| C8 |
N12 |
C13 |
N14 |
355.8 |
0.1 |
| C8 |
N12 |
C13 |
N15 |
178.4 |
180.0 |
| C13 |
N12 |
C8 |
HN12 |
180.0 |
179.9 |
| C4 |
C10 |
C9 |
C8 |
359.5 |
0.0 |
| C7 |
C8 |
C9 |
N12 |
183.8 |
179.9 |
| C9 |
C8 |
C7 |
H7 |
176.6 |
180.1 |
| C9 |
C8 |
N12 |
C13 |
5.7 |
359.9 |
| C9 |
C8 |
N12 |
HN12 |
185.6 |
180.1 |
| C10 |
C9 |
C8 |
N14 |
183.7 |
180.0 |
| C8 |
C9 |
C10 |
H10 |
179.5 |
180.0 |
| C13 |
N14 |
C9 |
C8 |
3.0 |
360.0 |
| C4 |
C10 |
C9 |
H10 |
180.0 |
180.0 |
| C8 |
C9 |
C10 |
N14 |
175.5 |
180.0 |
| C13 |
N14 |
C9 |
C10 |
178.9 |
180.0 |
| C13 |
N12 |
C8 |
C9 |
5.7 |
359.9 |
| C8 |
N12 |
C13 |
HN12 |
180.0 |
180.1 |
| N14 |
C13 |
N12 |
N15 |
177.4 |
180.0 |
| N12 |
C13 |
N14 |
C9 |
0.8 |
360.0 |
| N12 |
C13 |
N15 |
C25 |
180.8 |
0.0 |
| N12 |
C13 |
N15 |
HN15 |
300.8 |
180.0 |
| C8 |
C9 |
N14 |
C13 |
3.0 |
360.0 |
| C10 |
C9 |
N14 |
C13 |
178.9 |
180.0 |
| N12 |
C13 |
N14 |
N15 |
183.2 |
180.0 |
| N14 |
C13 |
N12 |
HN12 |
175.8 |
179.9 |
| N14 |
C13 |
N15 |
C25 |
4.1 |
180.0 |
| N14 |
C13 |
N15 |
HN15 |
124.1 |
360.0 |
| N12 |
C13 |
N15 |
N14 |
176.7 |
180.1 |
| N15 |
C13 |
N12 |
HN12 |
358.4 |
359.9 |
| N15 |
C13 |
N14 |
C9 |
177.6 |
180.0 |
| C13 |
N15 |
C25 |
C11 |
89.5 |
180.0 |
| C25 |
N15 |
C13 |
HN15 |
240.0 |
180.0 |
| C13 |
N15 |
C25 |
H25 |
209.5 |
300.0 |
| C13 |
N15 |
C25 |
H25A |
324.9 |
60.0 |
| C8 |
C9 |
N14 |
C10 |
184.1 |
180.0 |
| N14 |
C9 |
C10 |
H10 |
4.0 |
0.0 |
| C9 |
N14 |
C13 |
N15 |
177.6 |
180.0 |
| C13 |
N15 |
C25 |
HN15 |
120.0 |
180.0 |
| C11 |
C25 |
N15 |
H25 |
240.0 |
240.0 |
| C11 |
C25 |
N15 |
H25A |
124.6 |
120.0 |
| H25 |
C25 |
N15 |
H25A |
244.6 |
240.0 |
| C11 |
C25 |
N15 |
HN15 |
329.5 |
0.0 |
| N15 |
C25 |
C11 |
H25 |
120.0 |
120.0 |
| N15 |
C25 |
C11 |
H25A |
235.3 |
240.0 |
| H25 |
C25 |
C11 |
H25A |
115.3 |
120.0 |
| C14 |
C11 |
C25 |
H25 |
297.9 |
329.8 |
| C14 |
C11 |
C25 |
H25A |
182.6 |
209.8 |
| S1 |
C11 |
C25 |
H25 |
117.9 |
150.0 |
| S1 |
C11 |
C25 |
H25A |
2.6 |
30.0 |
| S1 |
C12 |
C131 |
C14 |
-0.0 |
359.7 |
| C131 |
C12 |
S1 |
H9 |
180.0 |
180.1 |
| S1 |
C12 |
C131 |
H101 |
180.0 |
180.0 |
| S1 |
C12 |
C131 |
H9 |
180.0 |
179.9 |
| C14 |
C131 |
C12 |
H101 |
180.0 |
179.8 |
| C12 |
C131 |
C14 |
H11 |
180.0 |
180.0 |
| C14 |
C131 |
C12 |
H9 |
180.0 |
179.8 |
| C12 |
C131 |
C14 |
H101 |
180.0 |
180.2 |
| C6 |
N1 |
HN1 |
C2 |
180.0 |
180.2 |
| HN1 |
N1 |
C6 |
C5 |
179.2 |
179.8 |
| HN1 |
N1 |
C6 |
O16 |
351.4 |
359.8 |
| HN1 |
N1 |
C2 |
N3 |
188.3 |
180.3 |
| HN1 |
N1 |
C2 |
H2 |
8.4 |
0.3 |
| C5 |
C7 |
H7 |
C8 |
180.0 |
180.1 |
| H7 |
C7 |
C8 |
N12 |
1.5 |
360.0 |
| H7 |
C7 |
C8 |
C9 |
176.6 |
180.1 |
| C4 |
C10 |
H10 |
C9 |
180.0 |
180.0 |
| H10 |
C10 |
C9 |
N14 |
4.0 |
0.0 |
| HN12 |
N12 |
C8 |
C9 |
185.6 |
180.1 |
| C8 |
N12 |
HN12 |
C13 |
180.0 |
179.9 |
| HN12 |
N12 |
C13 |
N14 |
175.8 |
179.9 |
| HN12 |
N12 |
C13 |
N15 |
358.4 |
359.9 |
| N1 |
C2 |
H2 |
N3 |
180.0 |
180.0 |
| H2 |
C2 |
N1 |
HN1 |
8.4 |
0.3 |
| C13 |
N15 |
HN15 |
C25 |
227.7 |
180.0 |
| HN15 |
N15 |
C25 |
C11 |
329.5 |
0.0 |
| HN15 |
N15 |
C25 |
H25 |
89.5 |
120.0 |
| HN15 |
N15 |
C25 |
H25A |
204.8 |
240.0 |
| N15 |
C25 |
H25 |
C11 |
252.0 |
240.0 |
| H25 |
C25 |
N15 |
HN15 |
89.5 |
120.0 |
| N15 |
C25 |
H25 |
H25A |
126.0 |
120.0 |
| C11 |
C25 |
H25 |
H25A |
234.0 |
240.0 |
| N15 |
C25 |
H25A |
C11 |
112.1 |
120.0 |
| H25A |
C25 |
N15 |
HN15 |
204.8 |
240.0 |
| N15 |
C25 |
H25A |
H25 |
236.0 |
240.0 |
| C11 |
C25 |
H25A |
H25 |
123.9 |
120.0 |
| S1 |
C12 |
H9 |
C131 |
180.0 |
180.1 |
| H9 |
C12 |
C131 |
C14 |
180.0 |
179.8 |
| H9 |
C12 |
C131 |
H101 |
-0.0 |
0.1 |
| C12 |
C131 |
H101 |
C14 |
180.0 |
179.7 |
| H101 |
C131 |
C12 |
H9 |
-0.0 |
0.1 |
| H101 |
C131 |
C14 |
H11 |
-0.0 |
359.8 |
| H11 |
C14 |
C131 |
H101 |
-0.0 |
359.8 |