PDB Chemical Component SAF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SAF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C6 |
1.414 |
1.383 |
| C1 |
C40 |
1.386 |
1.383 |
| C1 |
H1 |
1.103 |
1.079 |
| C3 |
C4 |
1.558 |
1.388 |
| C3 |
C40 |
1.537 |
1.381 |
| C3 |
H3 |
1.115 |
1.079 |
| C4 |
C5 |
1.366 |
1.386 |
| C4 |
O4 |
1.406 |
1.359 |
| C5 |
C6 |
1.428 |
1.381 |
| C5 |
H5 |
1.103 |
1.081 |
| C6 |
H6 |
1.103 |
1.079 |
| O4 |
H4 |
0.950 |
0.967 |
| N2 |
C7 |
1.445 |
1.469 |
| N2 |
C8 |
1.417 |
1.468 |
| N2 |
C9 |
1.595 |
1.469 |
| C7 |
H7C1 |
1.115 |
1.089 |
| C7 |
H7C2 |
1.115 |
1.089 |
| C7 |
H7C3 |
1.115 |
1.090 |
| C8 |
H8C1 |
1.115 |
1.090 |
| C8 |
H8C2 |
1.115 |
1.090 |
| C8 |
H8C3 |
1.115 |
1.090 |
| C9 |
C10 |
1.448 |
1.530 |
| C9 |
C40 |
1.632 |
1.506 |
| C9 |
H9 |
1.116 |
1.089 |
| C10 |
H101 |
1.115 |
1.091 |
| C10 |
H102 |
1.115 |
1.090 |
| C10 |
H103 |
1.115 |
1.090 |
Bond Angles for SAF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C40 |
120.8 |
120.1 |
| C6 |
C1 |
H1 |
119.6 |
119.9 |
| C1 |
C6 |
C5 |
125.6 |
120.0 |
| C1 |
C6 |
H6 |
117.2 |
120.0 |
| C40 |
C1 |
H1 |
119.6 |
120.0 |
| C1 |
C40 |
C3 |
116.5 |
120.0 |
| C1 |
C40 |
C9 |
114.5 |
120.0 |
| C4 |
C3 |
C40 |
119.9 |
120.0 |
| C4 |
C3 |
H3 |
108.5 |
120.1 |
| C3 |
C4 |
C5 |
117.3 |
119.9 |
| C3 |
C4 |
O4 |
127.5 |
120.0 |
| C40 |
C3 |
H3 |
108.5 |
120.0 |
| C3 |
C40 |
C9 |
128.6 |
120.0 |
| C5 |
C4 |
O4 |
115.1 |
120.1 |
| C4 |
C5 |
C6 |
120.0 |
120.0 |
| C4 |
C5 |
H5 |
120.0 |
120.0 |
| C4 |
O4 |
H4 |
127.5 |
106.8 |
| C6 |
C5 |
H5 |
120.0 |
120.0 |
| C5 |
C6 |
H6 |
117.2 |
120.0 |
| C7 |
N2 |
C8 |
100.3 |
106.7 |
| C7 |
N2 |
C9 |
116.5 |
106.7 |
| N2 |
C7 |
H7C1 |
100.4 |
109.5 |
| N2 |
C7 |
H7C2 |
115.7 |
109.5 |
| N2 |
C7 |
H7C3 |
115.7 |
109.4 |
| C8 |
N2 |
C9 |
107.2 |
106.7 |
| N2 |
C8 |
H8C1 |
100.3 |
109.5 |
| N2 |
C8 |
H8C2 |
115.7 |
109.5 |
| N2 |
C8 |
H8C3 |
115.7 |
109.5 |
| N2 |
C9 |
C10 |
108.6 |
109.4 |
| N2 |
C9 |
C40 |
113.2 |
109.5 |
| N2 |
C9 |
H9 |
106.8 |
109.5 |
| H7C1 |
C7 |
H7C2 |
115.7 |
109.5 |
| H7C1 |
C7 |
H7C3 |
115.7 |
109.5 |
| H7C2 |
C7 |
H7C3 |
94.7 |
109.5 |
| H8C1 |
C8 |
H8C2 |
115.7 |
109.5 |
| H8C1 |
C8 |
H8C3 |
115.7 |
109.5 |
| H8C2 |
C8 |
H8C3 |
94.7 |
109.4 |
| C10 |
C9 |
C40 |
114.2 |
109.5 |
| C10 |
C9 |
H9 |
106.8 |
109.5 |
| C9 |
C10 |
H101 |
114.2 |
109.5 |
| C9 |
C10 |
H102 |
110.5 |
109.5 |
| C9 |
C10 |
H103 |
110.5 |
109.5 |
| C40 |
C9 |
H9 |
106.8 |
109.5 |
| H101 |
C10 |
H102 |
110.5 |
109.5 |
| H101 |
C10 |
H103 |
110.5 |
109.4 |
| H102 |
C10 |
H103 |
99.8 |
109.5 |
Torsion Angles for SAF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C40 |
C1 |
C6 |
H1 |
180.0 |
180.0 |
| C6 |
C1 |
C40 |
C3 |
0.7 |
0.2 |
| C6 |
C1 |
C40 |
C9 |
187.5 |
180.0 |
| C4 |
C5 |
C6 |
C1 |
357.9 |
360.0 |
| C1 |
C6 |
C5 |
H5 |
177.9 |
179.9 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C6 |
C1 |
C40 |
H1 |
180.0 |
180.0 |
| C40 |
C1 |
C6 |
C5 |
0.3 |
360.0 |
| C40 |
C1 |
C6 |
H6 |
180.3 |
180.0 |
| C4 |
C3 |
C40 |
C1 |
359.9 |
359.6 |
| C1 |
C40 |
C3 |
H3 |
234.6 |
179.9 |
| C3 |
C40 |
C1 |
C9 |
173.2 |
180.2 |
| N2 |
C9 |
C40 |
C1 |
135.3 |
330.0 |
| C10 |
C9 |
C40 |
C1 |
260.3 |
90.0 |
| C1 |
C40 |
C9 |
H9 |
18.1 |
210.0 |
| C6 |
C1 |
H1 |
C40 |
180.0 |
180.0 |
| H1 |
C1 |
C6 |
C5 |
180.3 |
180.0 |
| H1 |
C1 |
C6 |
H6 |
0.3 |
0.0 |
| H1 |
C1 |
C40 |
C3 |
180.7 |
180.2 |
| H1 |
C1 |
C40 |
C9 |
7.5 |
360.0 |
| C1 |
C40 |
C3 |
C4 |
359.9 |
359.6 |
| C40 |
C3 |
C4 |
H3 |
234.7 |
180.3 |
| C4 |
C3 |
C40 |
C9 |
172.0 |
179.8 |
| C5 |
C4 |
C3 |
O4 |
177.8 |
180.2 |
| C3 |
C4 |
C5 |
C6 |
2.5 |
359.8 |
| C3 |
C4 |
C5 |
H5 |
182.5 |
179.9 |
| C3 |
C4 |
O4 |
H4 |
180.0 |
270.2 |
| C3 |
C40 |
C1 |
H1 |
180.7 |
180.2 |
| C1 |
C40 |
C3 |
C9 |
187.9 |
179.8 |
| C4 |
C3 |
C40 |
H3 |
125.3 |
179.7 |
| C40 |
C3 |
C4 |
C5 |
358.5 |
0.4 |
| C40 |
C3 |
C4 |
O4 |
180.7 |
180.2 |
| N2 |
C9 |
C40 |
C3 |
323.1 |
149.8 |
| C10 |
C9 |
C40 |
C3 |
88.1 |
269.8 |
| C3 |
C40 |
C9 |
H9 |
205.9 |
29.8 |
| C4 |
C3 |
H3 |
C40 |
228.3 |
180.3 |
| H3 |
C3 |
C4 |
C5 |
123.7 |
180.1 |
| H3 |
C3 |
C4 |
O4 |
306.0 |
359.9 |
| H3 |
C3 |
C40 |
C9 |
46.7 |
0.1 |
| C1 |
C6 |
C5 |
C4 |
357.9 |
360.0 |
| C5 |
C4 |
C3 |
C40 |
358.5 |
0.4 |
| C5 |
C4 |
C3 |
H3 |
123.7 |
180.1 |
| C3 |
C4 |
C5 |
O4 |
181.9 |
179.8 |
| C5 |
C4 |
O4 |
H4 |
2.2 |
90.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.9 |
| C4 |
C5 |
C6 |
H6 |
177.9 |
180.0 |
| O4 |
C4 |
C3 |
C40 |
180.7 |
180.2 |
| O4 |
C4 |
C3 |
H3 |
306.0 |
359.9 |
| C3 |
C4 |
O4 |
C5 |
177.8 |
180.2 |
| O4 |
C4 |
C5 |
C6 |
180.5 |
180.0 |
| O4 |
C4 |
C5 |
H5 |
0.5 |
0.0 |
| C5 |
C6 |
C1 |
C40 |
0.3 |
360.0 |
| C5 |
C6 |
C1 |
H1 |
180.3 |
180.0 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
O4 |
180.5 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
| H5 |
C5 |
C4 |
O4 |
0.5 |
0.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.9 |
| H5 |
C5 |
C6 |
H6 |
357.9 |
359.9 |
| H6 |
C6 |
C1 |
C40 |
180.3 |
180.0 |
| H6 |
C6 |
C1 |
H1 |
0.3 |
0.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
357.9 |
359.9 |
| C8 |
N2 |
C7 |
C9 |
115.3 |
246.2 |
| C7 |
N2 |
C8 |
H8C1 |
180.0 |
293.8 |
| C7 |
N2 |
C8 |
H8C2 |
54.7 |
53.8 |
| C7 |
N2 |
C8 |
H8C3 |
305.3 |
173.8 |
| C7 |
N2 |
C9 |
C10 |
176.6 |
60.0 |
| C7 |
N2 |
C9 |
C40 |
304.5 |
180.0 |
| C7 |
N2 |
C9 |
H9 |
61.7 |
300.0 |
| H7C1 |
C7 |
N2 |
H7C2 |
125.3 |
239.9 |
| H7C1 |
C7 |
N2 |
H7C3 |
234.7 |
120.0 |
| H7C2 |
C7 |
N2 |
H7C3 |
109.5 |
240.0 |
| C7 |
N2 |
C8 |
C9 |
237.9 |
113.8 |
| C8 |
N2 |
C7 |
H7C1 |
180.0 |
66.2 |
| C8 |
N2 |
C7 |
H7C2 |
54.7 |
186.3 |
| C8 |
N2 |
C7 |
H7C3 |
305.3 |
306.2 |
| C8 |
N2 |
C9 |
C10 |
65.2 |
173.8 |
| C8 |
N2 |
C9 |
C40 |
193.2 |
293.8 |
| C8 |
N2 |
C9 |
H9 |
310.4 |
53.8 |
| H8C1 |
C8 |
N2 |
H8C2 |
125.3 |
240.0 |
| H8C1 |
C8 |
N2 |
H8C3 |
234.7 |
120.0 |
| H8C2 |
C8 |
N2 |
H8C3 |
109.5 |
240.0 |
| C1 |
C40 |
C9 |
N2 |
135.3 |
330.0 |
| C3 |
C40 |
C9 |
N2 |
323.1 |
149.8 |
| C7 |
N2 |
C9 |
C8 |
111.4 |
246.2 |
| C9 |
N2 |
C7 |
H7C1 |
64.7 |
180.0 |
| C9 |
N2 |
C7 |
H7C2 |
299.4 |
300.0 |
| C9 |
N2 |
C7 |
H7C3 |
190.0 |
60.0 |
| C9 |
N2 |
C8 |
H8C1 |
302.1 |
180.0 |
| C9 |
N2 |
C8 |
H8C2 |
176.8 |
300.0 |
| C9 |
N2 |
C8 |
H8C3 |
67.3 |
60.0 |
| C10 |
C9 |
N2 |
C40 |
232.0 |
240.0 |
| C10 |
C9 |
N2 |
H9 |
114.8 |
120.0 |
| N2 |
C9 |
C10 |
H101 |
307.4 |
60.0 |
| N2 |
C9 |
C10 |
H102 |
182.1 |
180.0 |
| N2 |
C9 |
C10 |
H103 |
72.6 |
300.0 |
| C40 |
C9 |
N2 |
H9 |
242.8 |
240.0 |
| H7C1 |
C7 |
N2 |
C8 |
180.0 |
66.2 |
| H7C1 |
C7 |
N2 |
C9 |
64.7 |
180.0 |
| N2 |
C7 |
H7C1 |
H7C2 |
234.7 |
120.1 |
| N2 |
C7 |
H7C1 |
H7C3 |
125.3 |
240.1 |
| H7C2 |
C7 |
H7C1 |
H7C3 |
250.6 |
120.0 |
| H7C2 |
C7 |
N2 |
C8 |
54.7 |
186.3 |
| H7C2 |
C7 |
N2 |
C9 |
299.4 |
300.0 |
| N2 |
C7 |
H7C2 |
H7C1 |
117.0 |
239.9 |
| N2 |
C7 |
H7C2 |
H7C3 |
238.5 |
119.9 |
| H7C1 |
C7 |
H7C2 |
H7C3 |
121.5 |
240.0 |
| H7C3 |
C7 |
N2 |
C8 |
305.3 |
306.2 |
| H7C3 |
C7 |
N2 |
C9 |
190.0 |
60.0 |
| N2 |
C7 |
H7C3 |
H7C1 |
243.0 |
120.0 |
| N2 |
C7 |
H7C3 |
H7C2 |
121.5 |
240.0 |
| H7C1 |
C7 |
H7C3 |
H7C2 |
238.5 |
120.1 |
| H8C1 |
C8 |
N2 |
C9 |
302.1 |
180.0 |
| N2 |
C8 |
H8C1 |
H8C2 |
234.7 |
120.0 |
| N2 |
C8 |
H8C1 |
H8C3 |
125.3 |
240.0 |
| H8C2 |
C8 |
H8C1 |
H8C3 |
250.5 |
120.0 |
| H8C2 |
C8 |
N2 |
C9 |
176.8 |
300.0 |
| N2 |
C8 |
H8C2 |
H8C1 |
116.9 |
240.0 |
| N2 |
C8 |
H8C2 |
H8C3 |
238.5 |
120.0 |
| H8C1 |
C8 |
H8C2 |
H8C3 |
121.5 |
240.0 |
| H8C3 |
C8 |
N2 |
C9 |
67.3 |
60.0 |
| N2 |
C8 |
H8C3 |
H8C1 |
243.0 |
120.0 |
| N2 |
C8 |
H8C3 |
H8C2 |
121.5 |
240.0 |
| H8C1 |
C8 |
H8C3 |
H8C2 |
238.5 |
120.0 |
| C1 |
C40 |
C9 |
C10 |
260.3 |
90.0 |
| C3 |
C40 |
C9 |
C10 |
88.1 |
269.8 |
| N2 |
C9 |
C10 |
C40 |
127.4 |
120.0 |
| N2 |
C9 |
C10 |
H9 |
245.2 |
240.0 |
| C40 |
C9 |
C10 |
H9 |
117.8 |
120.0 |
| H101 |
C10 |
C9 |
H102 |
125.3 |
240.0 |
| H101 |
C10 |
C9 |
H103 |
234.8 |
119.9 |
| H102 |
C10 |
C9 |
H103 |
109.4 |
240.0 |
| C9 |
C40 |
C1 |
H1 |
7.5 |
360.0 |
| C1 |
C40 |
C9 |
C3 |
172.2 |
180.2 |
| C9 |
C40 |
C3 |
H3 |
46.7 |
0.1 |
| N2 |
C9 |
C40 |
C10 |
235.0 |
240.0 |
| N2 |
C9 |
C40 |
H9 |
117.2 |
120.0 |
| C10 |
C9 |
C40 |
H9 |
242.2 |
240.0 |
| C40 |
C9 |
C10 |
H101 |
180.0 |
300.0 |
| C40 |
C9 |
C10 |
H102 |
54.7 |
60.0 |
| C40 |
C9 |
C10 |
H103 |
305.3 |
180.1 |
| N2 |
C9 |
H9 |
C10 |
116.1 |
120.0 |
| N2 |
C9 |
H9 |
C40 |
238.6 |
240.0 |
| C10 |
C9 |
H9 |
C40 |
122.6 |
120.0 |
| H9 |
C9 |
C10 |
H101 |
62.2 |
180.0 |
| H9 |
C9 |
C10 |
H102 |
296.9 |
300.0 |
| H9 |
C9 |
C10 |
H103 |
187.5 |
60.1 |
| H101 |
C10 |
C9 |
C40 |
180.0 |
300.0 |
| H101 |
C10 |
C9 |
H9 |
62.2 |
180.0 |
| C9 |
C10 |
H101 |
H102 |
234.7 |
120.0 |
| C9 |
C10 |
H101 |
H103 |
125.2 |
240.0 |
| H102 |
C10 |
H101 |
H103 |
250.5 |
120.0 |
| H102 |
C10 |
C9 |
C40 |
54.7 |
60.0 |
| H102 |
C10 |
C9 |
H9 |
296.9 |
300.0 |
| C9 |
C10 |
H102 |
H101 |
127.4 |
240.0 |
| C9 |
C10 |
H102 |
H103 |
243.7 |
120.0 |
| H101 |
C10 |
H102 |
H103 |
116.3 |
240.0 |
| H103 |
C10 |
C9 |
C40 |
305.3 |
180.1 |
| H103 |
C10 |
C9 |
H9 |
187.5 |
60.1 |
| C9 |
C10 |
H103 |
H101 |
232.7 |
120.0 |
| C9 |
C10 |
H103 |
H102 |
116.3 |
240.0 |
| H101 |
C10 |
H103 |
H102 |
243.7 |
120.0 |