PDB Chemical Component SAB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SAB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.369 |
1.395 |
| C1 |
C6 |
1.365 |
1.395 |
| C1 |
C7 |
1.454 |
1.477 |
| C2 |
C3 |
1.434 |
1.379 |
| C2 |
H2 |
1.103 |
1.080 |
| C3 |
C4 |
1.437 |
1.382 |
| C3 |
H3 |
1.103 |
1.081 |
| C4 |
C5 |
1.436 |
1.384 |
| C4 |
S |
1.654 |
1.761 |
| C5 |
C6 |
1.431 |
1.379 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
H6 |
1.102 |
1.080 |
| C7 |
O7 |
1.186 |
1.216 |
| C7 |
N |
1.451 |
1.348 |
| N |
C1' |
1.456 |
1.465 |
| N |
HN |
1.020 |
0.969 |
| C1' |
C2' |
1.469 |
1.529 |
| C1' |
H1'1 |
1.115 |
1.089 |
| C1' |
H1'2 |
1.115 |
1.090 |
| C2' |
C3' |
1.428 |
1.529 |
| C2' |
H2'1 |
1.116 |
1.090 |
| C2' |
H2'2 |
1.114 |
1.090 |
| C3' |
C4' |
1.430 |
1.530 |
| C3' |
H3'1 |
1.115 |
1.088 |
| C3' |
H3'2 |
1.116 |
1.089 |
| C4' |
N4' |
1.493 |
1.469 |
| C4' |
H4'1 |
1.115 |
1.090 |
| C4' |
H4'2 |
1.115 |
1.091 |
| N4' |
HN41 |
1.019 |
1.009 |
| N4' |
HN42 |
1.021 |
1.009 |
| S |
O1S |
1.373 |
1.421 |
| S |
O2S |
1.521 |
1.420 |
| S |
N3S |
1.440 |
1.656 |
| N3S |
HN31 |
1.020 |
0.970 |
| N3S |
HN32 |
1.021 |
0.970 |
Bond Angles for SAB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
123.3 |
119.7 |
| C2 |
C1 |
C7 |
118.6 |
120.2 |
| C1 |
C2 |
C3 |
119.4 |
119.9 |
| C1 |
C2 |
H2 |
118.0 |
120.1 |
| C6 |
C1 |
C7 |
118.1 |
120.2 |
| C1 |
C6 |
C5 |
119.4 |
119.9 |
| C1 |
C6 |
H6 |
118.0 |
120.1 |
| C1 |
C7 |
O7 |
127.5 |
120.0 |
| C1 |
C7 |
N |
116.8 |
120.0 |
| C3 |
C2 |
H2 |
122.6 |
120.0 |
| C2 |
C3 |
C4 |
120.0 |
120.2 |
| C2 |
C3 |
H3 |
119.9 |
120.0 |
| C4 |
C3 |
H3 |
120.1 |
119.9 |
| C3 |
C4 |
C5 |
117.6 |
120.2 |
| C3 |
C4 |
S |
121.2 |
119.9 |
| C5 |
C4 |
S |
121.1 |
119.9 |
| C4 |
C5 |
C6 |
120.3 |
120.1 |
| C4 |
C5 |
H5 |
120.0 |
119.9 |
| C4 |
S |
O1S |
114.7 |
105.8 |
| C4 |
S |
O2S |
101.2 |
105.8 |
| C4 |
S |
N3S |
104.1 |
107.4 |
| C6 |
C5 |
H5 |
119.7 |
120.0 |
| C5 |
C6 |
H6 |
122.7 |
120.0 |
| O7 |
C7 |
N |
115.7 |
119.9 |
| C7 |
N |
C1' |
119.1 |
120.0 |
| C7 |
N |
HN |
120.3 |
120.0 |
| C1' |
N |
HN |
120.6 |
120.0 |
| N |
C1' |
C2' |
120.1 |
109.5 |
| N |
C1' |
H1'1 |
108.4 |
109.5 |
| N |
C1' |
H1'2 |
108.4 |
109.4 |
| C2' |
C1' |
H1'1 |
108.4 |
109.5 |
| C2' |
C1' |
H1'2 |
108.4 |
109.4 |
| C1' |
C2' |
C3' |
113.2 |
109.5 |
| C1' |
C2' |
H2'1 |
110.8 |
109.5 |
| C1' |
C2' |
H2'2 |
110.8 |
109.4 |
| H1'1 |
C1' |
H1'2 |
101.6 |
109.4 |
| C3' |
C2' |
H2'1 |
110.8 |
109.5 |
| C3' |
C2' |
H2'2 |
110.8 |
109.5 |
| C2' |
C3' |
C4' |
111.0 |
109.5 |
| C2' |
C3' |
H3'1 |
111.6 |
109.5 |
| C2' |
C3' |
H3'2 |
111.6 |
109.4 |
| H2'1 |
C2' |
H2'2 |
99.5 |
109.4 |
| C4' |
C3' |
H3'1 |
111.7 |
109.5 |
| C4' |
C3' |
H3'2 |
111.7 |
109.4 |
| C3' |
C4' |
N4' |
111.5 |
109.5 |
| C3' |
C4' |
H4'1 |
111.4 |
109.5 |
| C3' |
C4' |
H4'2 |
111.4 |
109.4 |
| H3'1 |
C3' |
H3'2 |
98.7 |
109.5 |
| N4' |
C4' |
H4'1 |
111.5 |
109.5 |
| N4' |
C4' |
H4'2 |
111.4 |
109.4 |
| C4' |
N4' |
HN41 |
111.5 |
106.7 |
| C4' |
N4' |
HN42 |
111.4 |
106.6 |
| H4'1 |
C4' |
H4'2 |
99.0 |
109.4 |
| HN41 |
N4' |
HN42 |
111.5 |
106.7 |
| O1S |
S |
O2S |
116.1 |
125.3 |
| O1S |
S |
N3S |
106.8 |
105.7 |
| O2S |
S |
N3S |
113.4 |
105.8 |
| S |
N3S |
HN31 |
104.1 |
120.0 |
| S |
N3S |
HN32 |
114.2 |
120.0 |
| HN31 |
N3S |
HN32 |
114.2 |
120.0 |
Torsion Angles for SAB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C7 |
181.1 |
180.2 |
| C2 |
C1 |
C6 |
C5 |
0.1 |
359.5 |
| C2 |
C1 |
C6 |
H6 |
180.1 |
180.0 |
| C2 |
C1 |
C7 |
O7 |
180.7 |
359.9 |
| C2 |
C1 |
C7 |
N |
360.0 |
180.1 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.1 |
| C1 |
C2 |
C3 |
C4 |
0.1 |
0.0 |
| C1 |
C2 |
C3 |
H3 |
180.1 |
180.0 |
| C2 |
C1 |
C6 |
C7 |
178.9 |
179.8 |
| C6 |
C1 |
C2 |
C3 |
359.8 |
0.3 |
| C6 |
C1 |
C2 |
H2 |
179.7 |
180.2 |
| C6 |
C1 |
C7 |
O7 |
359.6 |
179.7 |
| C6 |
C1 |
C7 |
N |
178.9 |
359.8 |
| C4 |
C5 |
C6 |
C1 |
0.2 |
0.5 |
| C1 |
C6 |
C5 |
H5 |
180.2 |
180.3 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
179.5 |
| C2 |
C1 |
C7 |
C6 |
181.1 |
180.2 |
| C7 |
C1 |
C2 |
C3 |
178.6 |
180.1 |
| C7 |
C1 |
C2 |
H2 |
358.6 |
359.9 |
| C7 |
C1 |
C6 |
C5 |
181.2 |
179.7 |
| C7 |
C1 |
C6 |
H6 |
1.3 |
0.2 |
| O7 |
C7 |
C1 |
N |
180.7 |
179.9 |
| C1 |
C7 |
N |
C1' |
172.4 |
180.0 |
| C1 |
C7 |
N |
HN |
352.4 |
359.9 |
| C3 |
C2 |
C1 |
C6 |
359.8 |
0.3 |
| C3 |
C2 |
C1 |
C7 |
178.6 |
180.1 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
179.9 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
0.1 |
359.9 |
| C2 |
C3 |
C4 |
S |
180.8 |
180.0 |
| H2 |
C2 |
C1 |
C6 |
179.7 |
180.2 |
| H2 |
C2 |
C1 |
C7 |
358.6 |
359.9 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.1 |
| H2 |
C2 |
C3 |
C4 |
180.2 |
180.2 |
| H2 |
C2 |
C3 |
H3 |
0.1 |
0.1 |
| C4 |
C3 |
C2 |
H2 |
180.2 |
180.2 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
S |
179.3 |
179.9 |
| C3 |
C4 |
C5 |
C6 |
359.7 |
359.8 |
| C3 |
C4 |
C5 |
H5 |
179.7 |
180.0 |
| C3 |
C4 |
S |
O1S |
79.6 |
202.6 |
| C3 |
C4 |
S |
O2S |
205.5 |
337.3 |
| C3 |
C4 |
S |
N3S |
323.3 |
90.0 |
| H3 |
C3 |
C2 |
H2 |
0.1 |
0.1 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
C5 |
180.2 |
180.0 |
| H3 |
C3 |
C4 |
S |
0.9 |
0.0 |
| C1 |
C6 |
C5 |
C4 |
0.2 |
0.5 |
| C5 |
C4 |
C3 |
H3 |
180.2 |
180.0 |
| C3 |
C4 |
C5 |
S |
180.7 |
180.1 |
| C5 |
C4 |
S |
O1S |
260.4 |
22.6 |
| C5 |
C4 |
S |
O2S |
26.2 |
157.4 |
| C5 |
C4 |
S |
N3S |
144.1 |
270.1 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.8 |
| C4 |
C5 |
C6 |
H6 |
180.1 |
180.0 |
| S |
C4 |
C3 |
H3 |
0.9 |
0.0 |
| C3 |
C4 |
S |
C5 |
179.3 |
179.9 |
| S |
C4 |
C5 |
C6 |
179.0 |
179.7 |
| S |
C4 |
C5 |
H5 |
359.0 |
359.9 |
| O1S |
S |
C4 |
O2S |
234.2 |
225.3 |
| O1S |
S |
C4 |
N3S |
116.3 |
112.6 |
| O2S |
S |
C4 |
N3S |
242.1 |
247.3 |
| C4 |
S |
N3S |
HN31 |
180.0 |
180.0 |
| C4 |
S |
N3S |
HN32 |
54.7 |
360.0 |
| C5 |
C6 |
C1 |
C7 |
181.2 |
179.7 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.5 |
| C6 |
C5 |
C4 |
S |
179.0 |
179.7 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.2 |
| H5 |
C5 |
C4 |
S |
359.0 |
359.9 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.8 |
| H5 |
C5 |
C6 |
H6 |
0.1 |
359.8 |
| H6 |
C6 |
C1 |
C7 |
1.3 |
0.2 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
179.5 |
| H6 |
C6 |
C5 |
H5 |
0.1 |
359.8 |
| C1 |
C7 |
O7 |
N |
179.3 |
180.1 |
| O7 |
C7 |
N |
C1' |
351.7 |
0.1 |
| O7 |
C7 |
N |
HN |
171.8 |
180.0 |
| C1 |
C7 |
N |
O7 |
180.6 |
179.9 |
| C1' |
N |
C7 |
HN |
179.9 |
180.1 |
| C7 |
N |
C1' |
C2' |
82.4 |
180.0 |
| C7 |
N |
C1' |
H1'1 |
207.7 |
59.9 |
| C7 |
N |
C1' |
H1'2 |
317.1 |
299.9 |
| C7 |
N |
C1' |
HN |
180.1 |
179.9 |
| C2' |
C1' |
N |
H1'1 |
234.7 |
120.1 |
| C2' |
C1' |
N |
H1'2 |
125.3 |
240.1 |
| N |
C1' |
C2' |
C3' |
29.2 |
180.0 |
| N |
C1' |
C2' |
H2'1 |
154.4 |
59.9 |
| N |
C1' |
C2' |
H2'2 |
263.9 |
300.0 |
| H1'1 |
C1' |
N |
H1'2 |
250.5 |
120.0 |
| C7 |
N |
HN |
C1' |
179.9 |
180.1 |
| HN |
N |
C1' |
C2' |
262.4 |
0.1 |
| HN |
N |
C1' |
H1'1 |
27.6 |
240.0 |
| HN |
N |
C1' |
H1'2 |
137.1 |
120.0 |
| C2' |
C1' |
N |
HN |
262.4 |
0.1 |
| N |
C1' |
C2' |
H1'1 |
125.3 |
239.9 |
| N |
C1' |
C2' |
H1'2 |
234.7 |
120.0 |
| H1'1 |
C1' |
C2' |
H1'2 |
109.5 |
240.1 |
| C3' |
C2' |
C1' |
H2'1 |
234.8 |
120.1 |
| C3' |
C2' |
C1' |
H2'2 |
125.3 |
240.0 |
| C1' |
C2' |
C3' |
C4' |
209.3 |
180.0 |
| C1' |
C2' |
C3' |
H3'1 |
334.5 |
60.0 |
| C1' |
C2' |
C3' |
H3'2 |
84.0 |
299.9 |
| H2'1 |
C2' |
C1' |
H2'2 |
250.5 |
119.9 |
| H1'1 |
C1' |
N |
HN |
27.6 |
240.0 |
| N |
C1' |
H1'1 |
C2' |
228.1 |
120.1 |
| N |
C1' |
H1'1 |
H1'2 |
114.1 |
240.0 |
| C2' |
C1' |
H1'1 |
H1'2 |
246.0 |
119.9 |
| H1'1 |
C1' |
C2' |
C3' |
263.9 |
300.1 |
| H1'1 |
C1' |
C2' |
H2'1 |
29.2 |
180.0 |
| H1'1 |
C1' |
C2' |
H2'2 |
138.7 |
60.1 |
| H1'2 |
C1' |
N |
HN |
137.1 |
120.0 |
| N |
C1' |
H1'2 |
C2' |
131.9 |
240.0 |
| N |
C1' |
H1'2 |
H1'1 |
245.9 |
120.0 |
| C2' |
C1' |
H1'2 |
H1'1 |
114.0 |
240.1 |
| H1'2 |
C1' |
C2' |
C3' |
154.5 |
60.0 |
| H1'2 |
C1' |
C2' |
H2'1 |
279.7 |
299.9 |
| H1'2 |
C1' |
C2' |
H2'2 |
29.2 |
180.0 |
| C3' |
C2' |
C1' |
H1'1 |
263.9 |
300.1 |
| C3' |
C2' |
C1' |
H1'2 |
154.5 |
60.0 |
| C1' |
C2' |
C3' |
H2'1 |
125.2 |
239.9 |
| C1' |
C2' |
C3' |
H2'2 |
234.7 |
119.9 |
| H2'1 |
C2' |
C3' |
H2'2 |
109.5 |
240.1 |
| C4' |
C3' |
C2' |
H3'1 |
234.7 |
120.0 |
| C4' |
C3' |
C2' |
H3'2 |
125.3 |
240.1 |
| C2' |
C3' |
C4' |
N4' |
275.7 |
180.0 |
| C2' |
C3' |
C4' |
H4'1 |
41.0 |
59.9 |
| C2' |
C3' |
C4' |
H4'2 |
150.5 |
299.9 |
| H3'1 |
C3' |
C2' |
H3'2 |
250.6 |
120.1 |
| H2'1 |
C2' |
C1' |
H1'1 |
29.2 |
180.0 |
| H2'1 |
C2' |
C1' |
H1'2 |
279.7 |
299.9 |
| C1' |
C2' |
H2'1 |
C3' |
233.4 |
120.1 |
| C1' |
C2' |
H2'1 |
H2'2 |
116.7 |
240.1 |
| C3' |
C2' |
H2'1 |
H2'2 |
243.3 |
120.0 |
| H2'1 |
C2' |
C3' |
C4' |
84.0 |
300.1 |
| H2'1 |
C2' |
C3' |
H3'1 |
209.3 |
180.1 |
| H2'1 |
C2' |
C3' |
H3'2 |
318.8 |
60.0 |
| H2'2 |
C2' |
C1' |
H1'1 |
138.7 |
60.1 |
| H2'2 |
C2' |
C1' |
H1'2 |
29.2 |
180.0 |
| C1' |
C2' |
H2'2 |
C3' |
126.6 |
240.0 |
| C1' |
C2' |
H2'2 |
H2'1 |
243.3 |
120.0 |
| C3' |
C2' |
H2'2 |
H2'1 |
116.7 |
240.0 |
| H2'2 |
C2' |
C3' |
C4' |
334.5 |
60.1 |
| H2'2 |
C2' |
C3' |
H3'1 |
99.8 |
300.0 |
| H2'2 |
C2' |
C3' |
H3'2 |
209.3 |
180.0 |
| C4' |
C3' |
C2' |
H2'1 |
84.0 |
300.1 |
| C4' |
C3' |
C2' |
H2'2 |
334.5 |
60.1 |
| C2' |
C3' |
C4' |
H3'1 |
125.3 |
239.9 |
| C2' |
C3' |
C4' |
H3'2 |
234.7 |
119.9 |
| H3'1 |
C3' |
C4' |
H3'2 |
109.5 |
240.0 |
| N4' |
C4' |
C3' |
H4'1 |
234.7 |
120.1 |
| N4' |
C4' |
C3' |
H4'2 |
125.2 |
240.1 |
| C3' |
C4' |
N4' |
HN41 |
180.0 |
180.0 |
| C3' |
C4' |
N4' |
HN42 |
54.7 |
293.7 |
| H4'1 |
C4' |
C3' |
H4'2 |
250.5 |
119.9 |
| H3'1 |
C3' |
C2' |
H2'1 |
209.3 |
180.1 |
| H3'1 |
C3' |
C2' |
H2'2 |
99.8 |
300.0 |
| C2' |
C3' |
H3'1 |
C4' |
235.1 |
120.1 |
| C2' |
C3' |
H3'1 |
H3'2 |
117.5 |
240.0 |
| C4' |
C3' |
H3'1 |
H3'2 |
242.4 |
119.9 |
| H3'1 |
C3' |
C4' |
N4' |
150.4 |
300.1 |
| H3'1 |
C3' |
C4' |
H4'1 |
275.7 |
179.9 |
| H3'1 |
C3' |
C4' |
H4'2 |
25.2 |
60.0 |
| H3'2 |
C3' |
C2' |
H2'1 |
318.8 |
60.0 |
| H3'2 |
C3' |
C2' |
H2'2 |
209.3 |
180.0 |
| C2' |
C3' |
H3'2 |
C4' |
124.9 |
240.0 |
| C2' |
C3' |
H3'2 |
H3'1 |
242.5 |
120.1 |
| C4' |
C3' |
H3'2 |
H3'1 |
117.6 |
240.0 |
| H3'2 |
C3' |
C4' |
N4' |
40.9 |
60.1 |
| H3'2 |
C3' |
C4' |
H4'1 |
166.2 |
299.9 |
| H3'2 |
C3' |
C4' |
H4'2 |
275.7 |
180.0 |
| N4' |
C4' |
C3' |
H3'1 |
150.4 |
300.1 |
| N4' |
C4' |
C3' |
H3'2 |
40.9 |
60.1 |
| C3' |
C4' |
N4' |
H4'1 |
125.3 |
239.9 |
| C3' |
C4' |
N4' |
H4'2 |
234.8 |
119.9 |
| H4'1 |
C4' |
N4' |
H4'2 |
109.5 |
240.0 |
| HN41 |
N4' |
C4' |
HN42 |
125.3 |
246.3 |
| H4'1 |
C4' |
C3' |
H3'1 |
275.7 |
179.9 |
| H4'1 |
C4' |
C3' |
H3'2 |
166.2 |
299.9 |
| C3' |
C4' |
H4'1 |
N4' |
234.7 |
120.1 |
| C3' |
C4' |
H4'1 |
H4'2 |
117.3 |
240.1 |
| N4' |
C4' |
H4'1 |
H4'2 |
242.6 |
120.0 |
| H4'1 |
C4' |
N4' |
HN41 |
54.8 |
300.1 |
| H4'1 |
C4' |
N4' |
HN42 |
289.4 |
53.8 |
| H4'2 |
C4' |
C3' |
H3'1 |
25.2 |
60.0 |
| H4'2 |
C4' |
C3' |
H3'2 |
275.7 |
180.0 |
| C3' |
C4' |
H4'2 |
N4' |
125.3 |
240.0 |
| C3' |
C4' |
H4'2 |
H4'1 |
242.7 |
120.0 |
| N4' |
C4' |
H4'2 |
H4'1 |
117.4 |
240.0 |
| H4'2 |
C4' |
N4' |
HN41 |
305.2 |
60.1 |
| H4'2 |
C4' |
N4' |
HN42 |
179.9 |
173.8 |
| HN41 |
N4' |
C4' |
H4'1 |
54.8 |
300.1 |
| HN41 |
N4' |
C4' |
H4'2 |
305.2 |
60.1 |
| C4' |
N4' |
HN41 |
HN42 |
234.7 |
113.7 |
| HN42 |
N4' |
C4' |
H4'1 |
289.4 |
53.8 |
| HN42 |
N4' |
C4' |
H4'2 |
179.9 |
173.8 |
| C4' |
N4' |
HN42 |
HN41 |
125.4 |
246.3 |
| C4 |
S |
O1S |
O2S |
117.6 |
123.1 |
| C4 |
S |
O1S |
N3S |
245.2 |
246.2 |
| O2S |
S |
O1S |
N3S |
127.6 |
123.1 |
| O1S |
S |
N3S |
HN31 |
58.3 |
67.4 |
| O1S |
S |
N3S |
HN32 |
293.0 |
247.3 |
| C4 |
S |
O2S |
O1S |
235.1 |
236.9 |
| C4 |
S |
O2S |
N3S |
110.9 |
113.8 |
| O1S |
S |
O2S |
N3S |
235.7 |
236.9 |
| O2S |
S |
N3S |
HN31 |
289.1 |
292.7 |
| O2S |
S |
N3S |
HN32 |
163.8 |
112.6 |
| C4 |
S |
N3S |
O1S |
121.7 |
112.6 |
| C4 |
S |
N3S |
O2S |
250.9 |
247.3 |
| O1S |
S |
N3S |
O2S |
129.2 |
134.7 |
| HN31 |
N3S |
S |
HN32 |
125.3 |
180.1 |
| S |
N3S |
HN31 |
HN32 |
234.7 |
179.9 |
| S |
N3S |
HN32 |
HN31 |
119.7 |
180.1 |