PDB Chemical Component S8Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for S8Z

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O2 1.420 1.429
O2 C3 1.421 1.430
C3 C4 1.459 1.472
C4 C5 1.199 1.174
C5 C6 1.421 1.432
C6 C7 1.380 1.395
C6 C11 1.377 1.395
C7 C8 1.381 1.380
C8 C9 1.381 1.383
C9 C10 1.384 1.383
C10 C11 1.381 1.380
C10 C12 1.505 1.507
C12 C13 1.503 1.506
C12 N20 1.462 1.473
C12 C24 1.511 1.508
C13 N14 1.295 1.284
C13 N18 1.377 1.384
N14 C15 1.469 1.468
C15 C16 1.519 1.530
C16 C17 1.518 1.536
C16 F22 1.360 1.400
C16 F23 1.359 1.399
C17 N18 1.457 1.471
N18 C19 1.368 1.366
C19 N20 1.286 1.299
C19 N21 1.372 1.374
C24 C25 1.385 1.383
C24 C29 1.385 1.383
C25 C26 1.381 1.381
C26 C27 1.383 1.387
C27 C28 1.378 1.388
C27 O30 1.387 1.359
C28 C29 1.379 1.381
O30 C31 1.428 1.429
C31 F32 1.360 1.399
C31 F33 1.360 1.399
C1 H11C 1.100 1.091
C1 H12C 1.100 1.090
C1 H13C 1.100 1.090
C3 H31C 1.100 1.090
C3 H32C 1.100 1.090
C7 H7 1.080 1.080
C11 H11 1.080 1.080
C8 H8 1.080 1.080
C9 H9 1.079 1.080
C15 H151 1.100 1.090
C15 H152 1.100 1.090
C17 H171 1.100 1.090
C17 H172 1.100 1.091
N21 H211 1.000 0.970
N21 H212 1.000 0.970
C25 H25 1.080 1.080
C29 H29 1.080 1.080
C26 H26 1.080 1.079
C28 H28 1.081 1.079
C31 H31 1.100 1.090

Bond Angles for S8Z

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 O2 C3 107.5 114.0
O2 C1 H11C 109.5 109.5
O2 C1 H12C 109.4 109.5
O2 C1 H13C 109.5 109.5
O2 C3 C4 110.6 109.5
O2 C3 H31C 109.2 109.4
O2 C3 H32C 109.2 109.4
C3 C4 C5 179.7 179.9
C4 C3 H31C 109.2 109.5
C4 C3 H32C 109.2 109.5
C4 C5 C6 179.5 179.9
C5 C6 C7 121.4 120.1
C5 C6 C11 118.0 120.1
C7 C6 C11 120.6 119.7
C6 C7 C8 119.1 119.8
C6 C7 H7 120.4 120.1
C6 C11 C10 120.9 119.8
C6 C11 H11 119.6 120.1
C7 C8 C9 120.0 120.1
C8 C7 H7 120.5 120.0
C7 C8 H8 120.0 119.9
C8 C9 C10 121.2 120.3
C9 C8 H8 120.0 119.9
C8 C9 H9 119.4 119.8
C9 C10 C11 118.2 120.1
C9 C10 C12 122.1 120.0
C10 C9 H9 119.4 119.9
C11 C10 C12 119.6 119.9
C10 C11 H11 119.6 120.0
C10 C12 C13 107.3 110.6
C10 C12 N20 111.6 110.6
C10 C12 C24 112.5 110.5
C13 C12 N20 102.8 103.8
C13 C12 C24 113.7 110.5
C12 C13 N14 129.7 130.3
C12 C13 N18 105.3 105.2
N20 C12 C24 108.6 110.7
C12 N20 C19 109.0 108.2
C12 C24 C25 119.5 119.9
C12 C24 C29 122.0 120.0
N14 C13 N18 125.0 124.5
C13 N14 C15 120.8 119.3
C13 N18 C17 119.8 121.8
C13 N18 C19 109.0 109.8
N14 C15 C16 111.8 110.4
N14 C15 H151 108.9 109.3
N14 C15 H152 108.9 109.3
C15 C16 C17 112.2 109.7
C15 C16 F22 110.0 109.4
C15 C16 F23 109.3 109.4
C16 C15 H151 108.9 109.3
C16 C15 H152 108.9 109.3
C17 C16 F22 109.3 109.4
C17 C16 F23 109.8 109.4
C16 C17 N18 109.2 107.2
C16 C17 H171 109.6 109.9
C16 C17 H172 109.6 109.9
F22 C16 F23 106.1 109.4
C17 N18 C19 128.1 128.4
N18 C17 H171 109.5 109.9
N18 C17 H172 109.5 109.9
N18 C19 N20 112.5 113.0
N18 C19 N21 124.6 123.5
N20 C19 N21 122.9 123.5
C19 N21 H211 120.0 120.0
C19 N21 H212 120.0 120.0
C25 C24 C29 118.5 120.1
C24 C25 C26 120.7 120.1
C24 C25 H25 119.7 120.0
C24 C29 C28 121.4 120.1
C24 C29 H29 119.3 120.0
C25 C26 C27 119.8 119.9
C26 C25 H25 119.6 120.0
C25 C26 H26 120.1 120.1
C26 C27 C28 120.4 119.9
C26 C27 O30 122.5 120.0
C27 C26 H26 120.1 120.0
C28 C27 O30 117.1 120.0
C27 C28 C29 119.3 119.9
C27 C28 H28 120.3 120.1
C27 O30 C31 122.6 117.0
C28 C29 H29 119.3 120.0
C29 C28 H28 120.4 120.0
O30 C31 F32 109.6 109.5
O30 C31 F33 109.7 109.5
O30 C31 H31 108.8 109.5
F32 C31 F33 109.3 109.5
F32 C31 H31 109.7 109.4
F33 C31 H31 109.7 109.5
H11C C1 H12C 109.5 109.4
H11C C1 H13C 109.5 109.5
H12C C1 H13C 109.5 109.5
H31C C3 H32C 109.5 109.5
H151 C15 H152 109.5 109.2
H171 C17 H172 109.5 109.9
H211 N21 H212 120.0 120.0

Torsion Angles for S8Z

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1 O2 C3 C4 105.8 180.0
C1 O2 C3 H31C 226.0 300.0
C1 O2 C3 H32C 345.6 60.0
H11C C1 O2 H12C 240.0 240.0
H11C C1 O2 H13C 120.0 120.0
H12C C1 O2 H13C 240.0 240.0
C3 O2 C1 H11C 180.0 300.0
C3 O2 C1 H12C 300.0 60.0
C3 O2 C1 H13C 60.0 180.0
O2 C3 C4 C5 9.2 70.1
C4 C3 O2 H31C 239.8 240.0
C4 C3 O2 H32C 120.2 120.0
H31C C3 O2 H32C 240.4 240.1
O2 C3 C4 H31C 120.2 120.0
O2 C3 C4 H32C 239.8 240.0
C3 C4 C5 C6 349.7 180.7
H31C C3 C4 H32C 119.7 120.0
C5 C4 C3 H31C 249.1 310.1
C5 C4 C3 H32C 129.4 190.1
C4 C5 C6 C7 134.5 289.1
C4 C5 C6 C11 315.4 109.0
C7 C6 C5 C11 179.1 180.2
C5 C6 C7 C8 181.7 180.0
C5 C6 C7 H7 1.8 0.0
C5 C6 C11 C10 178.9 179.7
C5 C6 C11 H11 358.9 360.0
C5 C6 C7 C11 181.0 179.8
C7 C6 C11 C10 359.8 359.5
C7 C6 C11 H11 179.8 179.8
C6 C7 C8 C9 359.9 0.1
C8 C7 C6 H7 180.0 180.0
C6 C7 C8 H8 179.9 180.0
C5 C6 C11 C7 179.1 180.2
C11 C6 C7 C8 0.8 0.2
C11 C6 C7 H7 180.8 180.2
C9 C10 C11 C6 358.8 0.5
C6 C11 C10 C12 181.1 180.3
C10 C11 C6 H11 180.0 179.8
C8 C7 C6 C11 0.8 0.2
C6 C7 C8 H7 180.0 180.0
C7 C8 C9 C10 358.7 360.0
C9 C8 C7 H8 180.0 180.1
C7 C8 C9 H9 178.7 180.0
C9 C8 C7 H7 179.9 180.1
C7 C8 C9 H8 180.0 179.9
C8 C9 C10 C11 1.9 359.8
C8 C9 C10 C12 179.6 180.0
C10 C9 C8 H9 180.0 180.0
C6 C11 C10 C9 358.8 0.5
C10 C9 C8 H8 178.7 180.0
C8 C9 C10 H9 180.0 180.0
C11 C10 C9 C12 182.3 179.8
C9 C10 C11 H11 178.8 180.2
C9 C10 C12 C13 261.4 330.1
C9 C10 C12 N20 149.5 215.6
C9 C10 C12 C24 27.2 92.7
C6 C11 C10 H11 180.0 180.2
C9 C10 C11 C12 177.8 180.2
C11 C10 C9 H9 181.9 179.7
C11 C10 C12 C13 79.1 150.3
C11 C10 C12 N20 327.2 35.8
C11 C10 C12 C24 204.8 272.9
C9 C10 C12 C11 182.3 179.8
C12 C10 C9 H9 359.6 359.9
C12 C10 C11 H11 1.1 0.1
C13 C12 C10 N20 111.9 114.4
C13 C12 C10 C24 234.2 237.3
C10 C12 C13 N14 49.2 62.1
C10 C12 C13 N18 230.8 242.4
N20 C12 C10 C24 122.4 122.9
C10 C12 N20 C19 122.4 118.1
C10 C12 C24 C25 75.0 89.3
C10 C12 C24 C29 255.6 269.0
C10 C12 C13 N20 242.2 241.4
C10 C12 C13 C24 125.0 122.6
N20 C12 C13 C24 242.8 241.3
C13 C12 N20 C19 7.7 359.5
C13 C12 C24 C25 197.2 212.0
C13 C12 C24 C29 17.7 31.7
N14 C13 C12 N18 178.4 179.7
C12 C13 N14 C15 180.3 179.0
C12 C13 N18 C17 173.3 178.4
C12 C13 N18 C19 11.4 358.8
C10 C12 N20 C13 114.7 118.6
C10 C12 N20 C24 235.4 237.2
C13 C12 N20 C24 120.8 118.6
N20 C12 C13 N14 167.0 180.7
N20 C12 C13 N18 348.6 1.0
N20 C12 C24 C25 310.9 326.5
N20 C12 C24 C29 131.5 146.2
N18 C19 N20 C12 359.0 359.8
C12 N20 C19 N21 179.0 179.9
C10 C12 C24 C13 237.8 237.3
C10 C12 C24 N20 124.1 122.8
C13 C12 C24 N20 246.3 245.5
C24 C12 C13 N14 284.2 299.4
C24 C12 C13 N18 105.8 119.8
C24 C12 N20 C19 247.0 240.9
C25 C24 C12 C29 179.4 180.3
C12 C24 C25 C26 180.5 180.0
C12 C24 C25 H25 0.5 359.9
C12 C24 C29 C28 179.7 179.7
C12 C24 C29 H29 359.7 360.0
N14 C13 C12 N20 167.0 180.7
N14 C13 C12 C24 284.2 299.4
C12 C13 N14 N18 181.8 180.4
N14 C13 N18 C17 354.7 358.7
N14 C13 N18 C19 192.9 179.1
C13 N14 C15 C16 340.5 31.0
C13 N14 C15 H151 100.8 151.3
C13 N14 C15 H152 220.1 270.8
N18 C13 C12 N20 348.6 1.0
N18 C13 C12 C24 105.8 119.8
C12 C13 N18 N14 178.5 179.7
N18 C13 N14 C15 358.4 358.6
C16 C17 N18 C13 31.7 334.6
C17 N18 C13 C19 161.9 179.6
C13 N18 C17 H171 271.7 215.1
C13 N18 C17 H172 151.7 94.0
C13 N18 C19 N20 353.0 1.0
C13 N18 C19 N21 173.0 180.9
C15 N14 C13 N18 358.4 358.6
N14 C15 C16 C17 46.1 302.8
N14 C15 C16 F22 284.2 182.8
N14 C15 C16 F23 168.2 62.9
C16 C15 N14 H151 239.7 239.7
C16 C15 N14 H152 120.4 120.3
H151 C15 N14 H152 240.7 240.6
N14 C15 C16 H151 120.3 120.3
N14 C15 C16 H152 239.6 239.8
C17 C16 C15 F22 121.9 120.1
C17 C16 C15 F23 237.9 239.9
C15 C16 C17 N18 308.6 52.8
C15 C16 C17 H171 68.6 172.2
C15 C16 C17 H172 188.7 293.4
F22 C16 C15 F23 116.1 119.9
H151 C15 C16 H152 119.3 119.5
C13 N18 C17 C16 31.7 334.6
C15 C16 C17 F22 237.7 239.9
C15 C16 C17 F23 121.8 120.1
C17 C16 C15 H151 285.8 182.6
C17 C16 C15 H152 166.5 63.1
F22 C16 C17 F23 244.0 240.2
C16 C17 N18 C19 189.7 154.2
N18 C17 C16 H171 240.1 240.6
N18 C17 C16 H172 120.0 119.4
H171 C17 C16 H172 239.9 238.9
C15 C16 F22 C17 123.6 120.2
C15 C16 F22 F23 242.0 240.1
F22 C16 C15 H151 163.9 62.5
F22 C16 C15 H152 44.6 303.0
C17 C16 F22 F23 118.4 119.9
F22 C16 C17 N18 70.9 172.8
F22 C16 C17 H171 190.8 292.3
F22 C16 C17 H172 310.9 53.4
C15 C16 F23 C17 236.5 239.7
C15 C16 F23 F22 118.5 119.9
F23 C16 C15 H151 47.8 302.6
F23 C16 C15 H152 288.6 183.2
C17 C16 F23 F22 242.0 240.1
F23 C16 C17 N18 186.9 292.7
F23 C16 C17 H171 306.8 52.1
F23 C16 C17 H172 66.9 173.3
C13 N18 C17 C19 202.0 180.4
N18 C17 C16 F22 70.9 172.8
N18 C17 C16 F23 186.9 292.7
C16 C17 N18 H171 120.0 119.5
C16 C17 N18 H172 240.0 240.6
C17 N18 C19 N20 193.1 181.3
C17 N18 C19 N21 13.1 1.3
H171 C17 N18 H172 120.0 121.1
C12 N20 C19 N18 359.0 359.8
C13 N18 C19 C17 159.9 179.6
C19 N18 C17 H171 69.8 34.7
C19 N18 C17 H172 309.7 273.6
N20 C19 N18 N21 180.0 180.1
N18 C19 N21 H211 180.0 360.0
N18 C19 N21 H212 0.0 180.1
C19 N20 C12 C24 247.0 240.9
N18 C19 N20 N21 180.0 179.9
N20 C19 N21 H211 0.0 179.9
N20 C19 N21 H212 180.0 360.0
N18 C19 N21 N20 180.0 180.1
H211 N21 C19 H212 180.0 179.9
C12 C24 C25 C29 180.5 179.7
C25 C24 C29 C28 0.2 359.4
C25 C24 C29 H29 180.2 179.7
C24 C25 C26 C27 359.6 359.9
C26 C25 C24 H25 180.0 180.1
C24 C25 C26 H26 179.6 180.0
C12 C24 C29 C25 179.5 180.3
C29 C24 C25 C26 360.0 0.3
C29 C24 C25 H25 180.0 180.2
C27 C28 C29 C24 0.0 0.6
C28 C29 C24 H29 180.0 179.7
C24 C29 C28 H28 180.0 180.3
C26 C25 C24 C29 360.0 0.3
C24 C25 C26 H25 180.0 179.9
C25 C26 C27 C28 0.7 0.0
C25 C26 C27 O30 179.5 180.0
C27 C26 C25 H26 180.0 180.0
C27 C26 C25 H25 179.6 180.1
C25 C26 C27 H26 180.0 180.0
C28 C27 C26 O30 181.2 180.0
C26 C27 C28 C29 359.5 359.7
C26 C27 C28 H28 179.5 180.0
C26 C27 O30 C31 30.8 180.0
C24 C29 C28 C27 0.0 0.6
C26 C27 C28 O30 178.9 180.0
C28 C27 C26 H26 180.7 180.0
C28 C27 O30 C31 209.6 0.0
C27 C28 C29 H29 180.0 180.3
C29 C28 C27 H28 180.0 179.8
C26 C27 O30 C28 181.1 180.0
O30 C27 C26 H26 359.5 360.0
O30 C27 C28 C29 180.6 179.7
O30 C27 C28 H28 0.6 360.0
C27 O30 C31 F32 157.9 300.0
C27 O30 C31 F33 277.9 60.0
C27 O30 C31 H31 37.9 180.0
C24 C29 C28 H29 180.0 180.3
C29 C28 C27 O30 180.6 179.7
C27 C28 C29 H28 180.0 180.2
F32 C31 O30 F33 240.0 240.0
F32 C31 O30 H31 120.0 119.9
F33 C31 O30 H31 240.0 240.0
O30 C31 F32 F33 120.3 120.0
O30 C31 F32 H31 240.6 240.0
F33 C31 F32 H31 120.4 120.0
O30 C31 F33 F32 239.8 240.0
O30 C31 F33 H31 119.4 120.0
F32 C31 F33 H31 239.6 240.0
H11C C1 O2 C3 180.0 300.0
O2 C1 H11C H12C 120.0 120.0
O2 C1 H11C H13C 240.0 240.0
H12C C1 H11C H13C 120.0 120.0
H12C C1 O2 C3 300.0 60.0
O2 C1 H12C H11C 240.0 240.0
O2 C1 H12C H13C 120.0 120.0
H11C C1 H12C H13C 240.0 240.0
H13C C1 O2 C3 60.0 180.0
O2 C1 H13C H11C 120.0 120.0
O2 C1 H13C H12C 240.0 240.0
H11C C1 H13C H12C 120.0 120.0
O2 C3 H31C C4 239.0 240.0
O2 C3 H31C H32C 119.5 119.9
H31C C3 C4 C5 249.1 310.1
C4 C3 H31C H32C 240.5 240.0
O2 C3 H32C C4 121.1 120.0
O2 C3 H32C H31C 240.5 240.1
H32C C3 C4 C5 129.4 190.1
C4 C3 H32C H31C 119.5 120.1
H7 C7 C6 C11 180.8 180.2
C6 C7 H7 C8 180.0 180.0
H7 C7 C8 C9 179.9 180.1
H7 C7 C8 H8 359.9 360.0
C6 C11 H11 C10 180.0 179.8
H11 C11 C10 C12 1.1 0.1
C7 C8 H8 C9 180.0 180.1
H8 C8 C7 H7 359.9 360.0
H8 C8 C9 C10 178.7 180.0
H8 C8 C9 H9 358.7 0.1
C8 C9 H9 C10 180.0 180.0
H9 C9 C8 H8 358.7 0.1
H9 C9 C10 C11 181.9 179.7
H9 C9 C10 C12 359.6 359.9
N14 C15 H151 C16 237.9 239.1
N14 C15 H151 H152 118.9 119.5
H151 C15 C16 C17 285.8 182.6
H151 C15 C16 F22 163.9 62.5
H151 C15 C16 F23 47.8 302.6
C16 C15 H151 H152 241.1 240.4
N14 C15 H152 C16 122.2 120.9
N14 C15 H152 H151 241.1 240.5
H152 C15 C16 C17 166.5 63.1
H152 C15 C16 F22 44.6 303.0
H152 C15 C16 F23 288.6 183.2
C16 C15 H152 H151 118.9 119.6
H171 C17 C16 F22 190.8 292.3
H171 C17 C16 F23 306.8 52.1
C16 C17 H171 N18 240.2 242.2
C16 C17 H171 H172 120.2 121.1
H171 C17 N18 C19 69.8 34.7
N18 C17 H171 H172 239.9 238.9
H172 C17 C16 F22 310.9 53.4
H172 C17 C16 F23 66.9 173.3
C16 C17 H172 N18 119.8 117.8
C16 C17 H172 H171 239.8 238.8
H172 C17 N18 C19 309.7 273.6
N18 C17 H172 H171 120.1 121.1
C19 N21 H211 H212 180.0 180.1
C19 N21 H212 H211 180.0 179.9
H25 C25 C24 C29 180.0 180.2
C24 C25 H25 C26 180.0 180.1
H25 C25 C26 C27 179.6 180.1
H25 C25 C26 H26 359.6 0.1
C24 C29 H29 C28 180.0 179.7
H29 C29 C28 H28 0.0 0.0
C25 C26 H26 C27 180.0 180.0
H26 C26 C25 H25 359.6 0.1
H26 C26 C27 C28 180.7 180.0
H26 C26 C27 O30 359.5 360.0
H28 C28 C27 O30 0.6 360.0
C27 C28 H28 C29 180.0 179.8
H28 C28 C29 H29 0.0 0.0
O30 C31 H31 F32 119.9 120.0
O30 C31 H31 F33 240.0 240.0
F32 C31 H31 F33 120.1 120.0