Atom Nomenclature for S8Z

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for S8Z

Atom Name (V3) Atom Name (V2)
C1 C1
O2 O2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
N14 N14
C15 C15
C16 C16
C17 C17
N18 N18
C19 C19
N20 N20
N21 N21
F22 F22
F23 F23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
O30 O30
C31 C31
F32 F32
F33 F33
H11C H11C
H12C H12C
H13C H13C
H31C H31C
H32C H32C
H7 H7
H11 H11
H8 H8
H9 H9
H151 H151
H152 H152
H171 H171
H172 H172
H211 H211
H212 H212
H25 H25
H29 H29
H26 H26
H28 H28
H31 H31