Atom Nomenclature for S85

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for S85

Atom Name (V3) Atom Name (V2)
F17 F17
C13 C13
C14 C14
C15 C15
N18 N18
C19 C19
C20 C20
C21 C21
N22 N22
C23 C23
C12 C12
C11 C11
C16 C16
C09 C09
C08 C08
C06 C06
N01 N01
C02 C02
N02 N02
C03 C03
C04 C04
C07 C07
C05 C05
H14 H14
H12 H12
H16 H16
H191 H191
H192 H192
H193 H193
H201 H201
H202 H202
H211 H211
H212 H212
H22 H22
H231 H231
H232 H232
H233 H233
H091 H091
H092 H092
H081 H081
H082 H082
H05 H05
H021 H021
H022 H022
H03 H03
H071 H071
H072 H072
H073 H073