Atom Nomenclature for S74

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for S74

Atom Name (V3) Atom Name (V2)
C26 C1
C32 C2
C25 C3
C27 C4
C31 C5
C33 C6
C24 C7
C28 C8
C30 C9
C34 C10
C12 C11
C14 C12
C11 C13
C15 C14
C23 C15
C29 C16
C13 C17
C10 C18
C18 C19
C3 C20
C1 C21
C19 C22
C6 C23
C8 C24
C21 C25
C22 C26
C20 C27
C4 C28
C16 C29
C17 C30
N5 N1
N2 N2
O36 O1
O35 O2
O7 O3
O9 O4
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32