PDB Chemical Component S6P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for S6P

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.535	1.530
C1	O1	1.326	1.429
C1	H11	1.115	1.090
C1	H12	1.115	1.090
C2	C3	1.549	1.530
C2	O2	1.447	1.429
C2	H2	1.115	1.090
C3	C4	1.551	1.530
C3	O3	1.438	1.429
C3	H3	1.115	1.090
C4	C5	1.540	1.530
C4	O4	1.447	1.429
C4	H4	1.115	1.089
C5	C6	1.574	1.530
C5	O5	1.407	1.429
C5	H5	1.115	1.090
C6	O6	1.420	1.430
C6	H61	1.115	1.091
C6	H62	1.115	1.090
O1	HO1	0.950	0.967
O2	HO2	0.950	0.968
O3	HO3	0.950	0.968
O4	HO4	0.950	0.968
O5	HO5	0.950	0.967
O6	P	1.662	1.610
P	O1P	1.542	1.610
P	O2P	1.515	1.609
P	O3P	1.528	1.480
O1P	H1P	0.950	0.967
O2P	H2P	0.950	0.967

Bond Angles for S6P

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	107.8	109.5
C2	C1	H11	112.9	109.5
C2	C1	H12	112.8	109.5
C1	C2	C3	114.5	109.5
C1	C2	O2	107.2	109.5
C1	C2	H2	107.4	109.5
O1	C1	H11	112.8	109.5
O1	C1	H12	112.8	109.5
C1	O1	HO1	107.8	106.8
H11	C1	H12	97.6	109.4
C3	C2	O2	108.8	109.5
C3	C2	H2	105.8	109.5
C2	C3	C4	112.6	109.5
C2	C3	O3	111.5	109.5
C2	C3	H3	105.5	109.5
O2	C2	H2	113.3	109.5
C2	O2	HO2	107.2	106.8
C4	C3	O3	108.2	109.5
C4	C3	H3	108.9	109.5
C3	C4	C5	113.5	109.4
C3	C4	O4	108.3	109.5
C3	C4	H4	107.2	109.5
O3	C3	H3	110.1	109.4
C3	O3	HO3	111.5	106.8
C5	C4	O4	108.6	109.5
C5	C4	H4	106.9	109.5
C4	C5	C6	110.9	109.4
C4	C5	O5	112.2	109.5
C4	C5	H5	104.3	109.5
O4	C4	H4	112.3	109.5
C4	O4	HO4	108.3	106.7
C6	C5	O5	100.7	109.5
C6	C5	H5	115.2	109.4
C5	C6	O6	106.3	109.5
C5	C6	H61	113.4	109.5
C5	C6	H62	113.4	109.5
O5	C5	H5	113.9	109.5
C5	O5	HO5	112.3	106.7
O6	C6	H61	113.4	109.5
O6	C6	H62	113.4	109.5
C6	O6	P	112.6	106.8
H61	C6	H62	97.1	109.4
O6	P	O1P	110.4	109.5
O6	P	O2P	110.3	109.5
O6	P	O3P	105.9	109.4
O1P	P	O2P	106.0	109.5
O1P	P	O3P	112.4	109.4
P	O1P	H1P	110.4	106.8
O2P	P	O3P	111.8	109.5
P	O2P	H2P	110.3	106.8

Torsion Angles for S6P

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	H11	125.3	120.0
O1	C1	C2	H12	234.7	240.0
C2	C1	O1	HO1	180.0	180.0
H11	C1	C2	H12	109.5	120.0
C3	C2	C1	O2	239.2	240.0
C3	C2	C1	H2	117.1	120.0
C1	C2	C3	C4	81.1	175.0
C1	C2	C3	O3	319.3	55.0
C1	C2	C3	H3	199.8	295.0
O2	C2	C1	H2	237.9	240.0
C1	C2	O2	HO2	180.0	300.0
C2	C1	O1	H11	234.7	240.0
C2	C1	O1	H12	125.2	120.0
O1	C1	C2	C3	180.0	175.0
O1	C1	C2	O2	300.8	295.0
O1	C1	C2	H2	62.9	55.0
H11	C1	O1	H12	250.5	240.0
C2	C1	H11	O1	122.5	120.0
C2	C1	H11	H12	241.3	240.0
H11	C1	C2	C3	54.8	55.0
H11	C1	C2	O2	175.6	175.0
H11	C1	C2	H2	297.6	295.0
O1	C1	H11	H12	118.8	120.0
H11	C1	O1	HO1	305.3	300.0
C2	C1	H12	O1	237.5	240.0
C2	C1	H12	H11	118.8	120.0
H12	C1	C2	C3	305.3	295.0
H12	C1	C2	O2	66.1	55.0
H12	C1	C2	H2	188.2	175.0
O1	C1	H12	H11	241.2	240.0
H12	C1	O1	HO1	54.8	60.0
C3	C2	C1	O1	180.0	175.0
C3	C2	C1	H11	54.8	55.0
C3	C2	C1	H12	305.3	295.0
C1	C2	C3	O2	119.9	120.0
C1	C2	C3	H2	242.0	240.0
O2	C2	C3	H2	122.0	120.0
C3	C2	O2	HO2	304.4	60.0
C4	C3	C2	O3	121.8	120.0
C4	C3	C2	H3	241.3	240.0
C2	C3	C4	C5	166.0	185.0
C2	C3	C4	O4	286.7	305.0
C2	C3	C4	H4	48.1	65.0
O3	C3	C2	H3	119.5	120.0
C2	C3	O3	HO3	180.0	60.0
O2	C2	C1	O1	300.8	295.0
O2	C2	C1	H11	175.6	175.0
O2	C2	C1	H12	66.1	55.0
C1	C2	O2	C3	235.6	240.0
C1	C2	O2	H2	118.3	120.0
C3	C2	O2	H2	242.7	240.0
O2	C2	C3	C4	321.2	55.0
O2	C2	C3	O3	199.4	295.0
O2	C2	C3	H3	79.9	175.0
H2	C2	C1	O1	62.9	55.0
H2	C2	C1	H11	297.6	295.0
H2	C2	C1	H12	188.2	175.0
C1	C2	H2	C3	122.7	120.0
C1	C2	H2	O2	241.8	240.0
C3	C2	H2	O2	119.1	120.0
H2	C2	C3	C4	199.2	295.0
H2	C2	C3	O3	77.3	175.0
H2	C2	C3	H3	317.8	55.0
H2	C2	O2	HO2	61.7	180.0
C4	C3	C2	O2	321.2	55.0
C4	C3	C2	H2	199.2	295.0
C2	C3	C4	O3	236.3	240.0
C2	C3	C4	H3	116.6	120.0
O3	C3	C4	H3	240.3	240.0
C4	C3	O3	HO3	55.6	300.0
C5	C4	C3	O4	239.3	240.0
C5	C4	C3	H4	117.9	120.0
C3	C4	C5	C6	184.4	180.0
C3	C4	C5	O5	296.2	300.0
C3	C4	C5	H5	59.9	60.1
O4	C4	C3	H4	238.6	240.0
C3	C4	O4	HO4	180.0	300.0
O3	C3	C2	O2	199.4	295.0
O3	C3	C2	H2	77.3	175.0
C2	C3	O3	C4	124.3	120.0
C2	C3	O3	H3	243.3	240.0
C4	C3	O3	H3	118.9	120.0
O3	C3	C4	C5	289.7	305.0
O3	C3	C4	O4	50.4	65.0
O3	C3	C4	H4	171.8	185.0
H3	C3	C2	O2	79.9	175.0
H3	C3	C2	H2	317.8	55.0
C2	C3	H3	C4	238.9	240.0
C2	C3	H3	O3	120.4	120.0
C4	C3	H3	O3	241.5	240.0
H3	C3	C4	C5	49.4	65.0
H3	C3	C4	O4	170.1	185.0
H3	C3	C4	H4	291.5	305.0
H3	C3	O3	HO3	296.7	180.0
C5	C4	C3	O3	289.7	305.0
C5	C4	C3	H3	49.4	65.0
C3	C4	C5	O4	120.5	120.0
C3	C4	C5	H4	242.0	240.0
O4	C4	C5	H4	121.4	120.0
C5	C4	O4	HO4	303.7	60.0
C6	C5	C4	O5	248.2	240.0
C6	C5	C4	H5	124.5	119.9
C4	C5	C6	O6	308.9	185.0
C4	C5	C6	H61	183.6	305.0
C4	C5	C6	H62	74.1	65.0
O5	C5	C4	H5	236.3	239.9
C4	C5	O5	HO5	180.0	300.1
O4	C4	C3	O3	50.4	65.0
O4	C4	C3	H3	170.1	185.0
C3	C4	O4	C5	236.3	240.0
C3	C4	O4	H4	118.2	120.0
C5	C4	O4	H4	242.0	240.0
O4	C4	C5	C6	63.9	60.0
O4	C4	C5	O5	175.6	180.0
O4	C4	C5	H5	299.4	300.0
H4	C4	C3	O3	171.8	185.0
H4	C4	C3	H3	291.5	305.0
C3	C4	H4	C5	122.1	120.0
C3	C4	H4	O4	241.1	240.0
C5	C4	H4	O4	119.0	120.0
H4	C4	C5	C6	302.5	300.0
H4	C4	C5	O5	54.2	60.0
H4	C4	C5	H5	178.0	180.0
H4	C4	O4	HO4	61.8	180.0
C6	C5	C4	O4	63.9	60.0
C6	C5	C4	H4	302.5	300.0
C4	C5	C6	O5	119.0	120.0
C4	C5	C6	H5	241.9	240.0
O5	C5	C6	H5	123.0	120.0
C6	C5	O5	HO5	298.0	60.1
O6	C6	C5	H61	125.3	240.0
O6	C6	C5	H62	234.7	120.0
C5	C6	O6	P	178.9	180.0
H61	C6	C5	H62	109.4	240.0
O5	C5	C4	O4	175.6	180.0
O5	C5	C4	H4	54.2	60.0
C4	C5	O5	C6	242.0	240.0
C4	C5	O5	H5	118.2	120.1
C6	C5	O5	H5	236.2	240.1
O5	C5	C6	O6	189.9	65.0
O5	C5	C6	H61	64.6	185.0
O5	C5	C6	H62	315.2	305.0
H5	C5	C4	O4	299.4	300.0
H5	C5	C4	H4	178.0	180.0
C4	C5	H5	C6	121.7	120.0
C4	C5	H5	O5	237.3	239.9
C6	C5	H5	O5	115.6	120.0
H5	C5	C6	O6	66.9	305.0
H5	C5	C6	H61	301.7	65.0
H5	C5	C6	H62	192.2	185.0
H5	C5	O5	HO5	61.8	180.0
O6	C6	C5	O5	189.9	65.0
O6	C6	C5	H5	66.9	305.0
C5	C6	O6	H61	234.7	120.0
C5	C6	O6	H62	125.2	240.0
H61	C6	O6	H62	250.5	119.9
C6	O6	P	O1P	301.3	175.0
C6	O6	P	O2P	58.1	295.0
C6	O6	P	O3P	179.3	55.0
H61	C6	C5	O5	64.6	185.0
H61	C6	C5	H5	301.7	65.0
C5	C6	H61	O6	121.4	240.0
C5	C6	H61	H62	240.7	120.0
O6	C6	H61	H62	119.3	240.0
H61	C6	O6	P	304.1	60.0
H62	C6	C5	O5	315.2	305.0
H62	C6	C5	H5	192.2	185.0
C5	C6	H62	O6	238.6	120.0
C5	C6	H62	H61	119.3	240.0
O6	C6	H62	H61	240.7	120.0
H62	C6	O6	P	53.6	300.0
HO1	O1	C1	H11	305.3	300.0
HO1	O1	C1	H12	54.8	60.0
HO2	O2	C2	H2	61.7	180.0
HO3	O3	C3	H3	296.7	180.0
HO4	O4	C4	H4	61.8	180.0
HO5	O5	C5	H5	61.8	180.0
P	O6	C6	H61	304.1	60.0
P	O6	C6	H62	53.6	300.0
O1P	P	O6	O2P	243.2	240.0
O1P	P	O6	O3P	121.9	119.9
O6	P	O1P	H1P	180.0	180.0
O2P	P	O6	O3P	238.8	240.0
O6	P	O2P	H2P	180.0	300.0
O6	P	O1P	O2P	119.4	120.0
O6	P	O1P	O3P	242.0	240.1
O2P	P	O1P	O3P	122.5	120.0
O1P	P	O2P	H2P	299.5	60.0
O6	P	O2P	O1P	240.5	240.0
O6	P	O2P	O3P	117.6	120.0
O1P	P	O2P	O3P	237.1	240.0
O2P	P	O1P	H1P	60.6	60.0
O6	P	O3P	O1P	120.6	120.0
O6	P	O3P	O2P	239.8	240.0
O1P	P	O3P	O2P	119.2	120.0
O3P	P	O1P	H1P	298.1	299.9
O3P	P	O2P	H2P	62.3	180.0
H1P	O1P	P	O2P	60.6	60.0
H1P	O1P	P	O3P	298.1	299.9
H2P	O2P	P	O3P	62.3	180.0