PDB Chemical Component S6I
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for S6I
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.366 |
1.383 |
| C6 |
C1 |
1.399 |
1.382 |
| C1 |
S1 |
1.773 |
1.762 |
| HN1 |
N1 |
1.000 |
0.971 |
| N1 |
S1 |
1.663 |
1.656 |
| N1 |
HN1A |
1.000 |
0.970 |
| O1 |
S1 |
1.464 |
1.421 |
| S1 |
O2 |
1.464 |
1.422 |
| C3 |
C2 |
1.380 |
1.381 |
| C2 |
H2 |
1.080 |
1.080 |
| H3 |
C3 |
1.080 |
1.080 |
| C4 |
C3 |
1.383 |
1.389 |
| N7 |
C4 |
1.443 |
1.399 |
| C4 |
C5 |
1.348 |
1.388 |
| H5 |
C5 |
1.080 |
1.080 |
| C5 |
C6 |
1.336 |
1.382 |
| C6 |
H6 |
1.080 |
1.080 |
| C8 |
N7 |
1.404 |
1.348 |
| HN7 |
N7 |
1.000 |
0.970 |
| N9 |
C8 |
1.433 |
1.347 |
| C8 |
O8 |
1.195 |
1.216 |
| HN9 |
N9 |
1.000 |
0.970 |
| C10 |
N9 |
1.353 |
1.465 |
| C14 |
C10 |
1.490 |
1.542 |
| H10 |
C10 |
1.100 |
1.090 |
| C10 |
C11 |
1.473 |
1.539 |
| C11 |
H11A |
1.100 |
1.090 |
| C11 |
C12 |
1.492 |
1.543 |
| C11 |
H11 |
1.100 |
1.089 |
| C13 |
C12 |
1.507 |
1.549 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.090 |
| C14 |
C13 |
1.530 |
1.549 |
| H13 |
C13 |
1.100 |
1.090 |
| C13 |
H13A |
1.100 |
1.089 |
| H14 |
C14 |
1.100 |
1.091 |
| H14A |
C14 |
1.100 |
1.090 |
Bond Angles for S6I
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
S1 |
N1 |
106.8 |
107.2 |
| C1 |
S1 |
O1 |
108.1 |
106.4 |
| C1 |
S1 |
O2 |
107.1 |
106.4 |
| HN1 |
N1 |
HN1A |
109.4 |
120.0 |
| S1 |
N1 |
HN1A |
109.5 |
120.1 |
| N1 |
S1 |
O1 |
111.4 |
106.4 |
| N1 |
S1 |
O2 |
109.1 |
106.4 |
| O1 |
S1 |
O2 |
113.9 |
123.2 |
| C3 |
C2 |
H2 |
119.7 |
119.9 |
| C4 |
C5 |
C6 |
120.9 |
119.9 |
| C5 |
C6 |
H6 |
119.5 |
119.9 |
| C10 |
C11 |
H11A |
110.0 |
110.0 |
| C10 |
C11 |
C12 |
107.9 |
106.6 |
| C10 |
C11 |
H11 |
110.0 |
110.1 |
| C12 |
C11 |
H11A |
110.0 |
110.0 |
| H11 |
C11 |
H11A |
108.9 |
110.0 |
| C12 |
C11 |
H11 |
110.0 |
110.1 |
| C11 |
C12 |
H12 |
110.8 |
110.5 |
| C11 |
C12 |
H12A |
110.8 |
110.5 |
| C13 |
C12 |
H12 |
110.8 |
110.5 |
| C13 |
C12 |
H12A |
110.8 |
110.6 |
| H12 |
C12 |
H12A |
108.1 |
110.4 |
| C14 |
C13 |
H13A |
110.4 |
110.8 |
| H13 |
C13 |
H13A |
108.5 |
110.7 |
Torsion Angles for S6I
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
S1 |
O2 |
250.5 |
336.5 |
| C1 |
S1 |
N1 |
HN1A |
300.0 |
360.0 |
| N1 |
S1 |
C1 |
O1 |
120.0 |
246.5 |
| N1 |
S1 |
C1 |
O2 |
243.2 |
113.5 |
| O1 |
S1 |
C1 |
O2 |
123.2 |
227.0 |
| S1 |
N1 |
HN1 |
HN1A |
120.0 |
180.0 |
| C1 |
S1 |
N1 |
O1 |
242.2 |
113.5 |
| C1 |
S1 |
N1 |
O2 |
115.5 |
246.5 |
| HN1 |
N1 |
S1 |
HN1A |
240.0 |
180.0 |
| O1 |
S1 |
N1 |
O2 |
233.3 |
133.0 |
| HN1A |
N1 |
S1 |
O1 |
57.8 |
246.5 |
| HN1A |
N1 |
S1 |
O2 |
184.5 |
113.5 |
| C1 |
S1 |
O1 |
N1 |
117.0 |
246.0 |
| C1 |
S1 |
O1 |
O2 |
241.1 |
123.0 |
| O1 |
S1 |
N1 |
HN1A |
57.8 |
246.5 |
| N1 |
S1 |
O1 |
O2 |
124.0 |
237.0 |
| C1 |
S1 |
O2 |
N1 |
244.7 |
114.0 |
| C1 |
S1 |
O2 |
O1 |
119.5 |
237.0 |
| O2 |
S1 |
N1 |
HN1A |
184.5 |
113.5 |
| N1 |
S1 |
O2 |
O1 |
234.7 |
123.0 |
| C4 |
C3 |
C2 |
H2 |
181.0 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
179.4 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
359.4 |
359.8 |
| C14 |
C10 |
C11 |
H11A |
88.4 |
240.7 |
| C14 |
C10 |
C11 |
H11 |
208.4 |
119.3 |
| H10 |
C10 |
C11 |
H11A |
325.1 |
121.5 |
| H10 |
C10 |
C11 |
H11 |
85.0 |
0.0 |
| C12 |
C11 |
C10 |
H11A |
240.0 |
119.2 |
| H11 |
C11 |
C10 |
H11A |
120.0 |
238.6 |
| C12 |
C11 |
C10 |
H11 |
120.0 |
240.6 |
| C10 |
C11 |
C12 |
H12 |
139.4 |
142.3 |
| C10 |
C11 |
C12 |
H12A |
259.4 |
264.8 |
| C10 |
C11 |
H11A |
C12 |
241.2 |
117.1 |
| C10 |
C11 |
H11A |
H11 |
120.6 |
238.6 |
| C12 |
C11 |
H11A |
H11 |
239.3 |
121.4 |
| H11A |
C11 |
C12 |
H12 |
19.4 |
261.5 |
| H11A |
C11 |
C12 |
H12A |
139.4 |
24.1 |
| C10 |
C11 |
C12 |
H11A |
120.0 |
240.8 |
| C10 |
C11 |
C12 |
H11 |
240.0 |
119.4 |
| H11 |
C11 |
C12 |
H11A |
240.0 |
121.4 |
| C13 |
C12 |
C11 |
H12 |
240.0 |
241.3 |
| C13 |
C12 |
C11 |
H12A |
120.0 |
118.8 |
| H12 |
C12 |
C11 |
H12A |
240.0 |
237.5 |
| C10 |
C11 |
H11 |
H11A |
239.4 |
121.4 |
| C10 |
C11 |
H11 |
C12 |
118.8 |
242.8 |
| C12 |
C11 |
H11 |
H11A |
120.7 |
238.6 |
| H11 |
C11 |
C12 |
H12 |
259.4 |
22.9 |
| H11 |
C11 |
C12 |
H12A |
19.4 |
145.5 |
| C13 |
C12 |
C11 |
H11A |
259.4 |
142.9 |
| C13 |
C12 |
C11 |
H11 |
139.4 |
264.3 |
| C11 |
C12 |
C13 |
H12 |
120.0 |
118.7 |
| C11 |
C12 |
C13 |
H12A |
240.0 |
241.3 |
| H12 |
C12 |
C13 |
H12A |
120.0 |
122.6 |
| H12 |
C12 |
C11 |
H11A |
19.4 |
261.5 |
| H12 |
C12 |
C11 |
H11 |
259.4 |
22.9 |
| C11 |
C12 |
H12 |
H12A |
121.6 |
122.6 |
| C13 |
C12 |
H12 |
H12A |
238.4 |
237.3 |
| H12A |
C12 |
C11 |
H11A |
139.4 |
24.1 |
| H12A |
C12 |
C11 |
H11 |
19.4 |
145.5 |
| C11 |
C12 |
H12A |
H12 |
238.4 |
237.4 |
| C13 |
C12 |
H12A |
H12 |
121.6 |
122.6 |
| C14 |
C13 |
C12 |
H12 |
240.1 |
203.4 |
| C14 |
C13 |
C12 |
H12A |
120.1 |
80.8 |
| H13 |
C13 |
C14 |
H13A |
120.0 |
123.3 |
| C14 |
C13 |
H13 |
H13A |
238.8 |
236.6 |
| H13A |
C13 |
C12 |
H12 |
120.2 |
85.0 |
| H13A |
C13 |
C12 |
H12A |
0.2 |
322.5 |