Atom Nomenclature for S6H

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for S6H

Atom Name (V3) Atom Name (V2)
C01 C1
C02 C2
C03 C3
C04 C4
C05 C5
CL1 CL1
CL2 CL2
C08 C6
C09 C7
C10 C8
C11 C9
C12 C10
CL3 CL3
CL4 CL4
CL5 CL5
CL6 CL6
CL7 CL7
CL8 CL8
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6