PDB Chemical Component S6G

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for S6G

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.480 1.480
P OP2 1.483 1.611
P OP3   1.610
P O5' 1.613 1.609
OP2 HOP2 0.950 0.967
OP3 HOP3   0.967
O5' C5' 1.437 1.429
C5' C4' 1.541 1.530
C5' H5' 1.090 1.090
C5' H5'' 1.089 1.090
C4' O4' 1.442 1.443
C4' C3' 1.535 1.551
C4' H4' 1.090 1.090
O4' C1' 1.441 1.438
C3' O3' 1.441 1.429
C3' C2' 1.513 1.548
C3' H3' 1.090 1.090
O3' HO3' 0.950 0.967
C2' C1' 1.528 1.541
C2' H2' 1.090 1.090
C2' H2'' 1.090 1.089
C1' N9 1.478 1.465
C1' H1' 1.090 1.090
N9 C8 1.365 1.364
N9 C4 1.375 1.369
C8 N7 1.298 1.301
C8 H8 1.090 1.080
N7 C5 1.394 1.355
C5 C6 1.415 1.414
C5 C4 1.375 1.399
C6 S6 1.718 1.712
C6 N1 1.386 1.351
N1 C2 1.377 1.363
N1 HN1 1.010 0.970
C2 N2 1.424 1.372
C2 N3 1.335 1.315
N2 HN21 1.010 0.969
N2 HN22 1.010 0.970
N3 C4 1.353 1.339

Bond Angles for S6G

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.6 109.4
OP1 P OP3   109.5
OP1 P O5' 108.5 109.5
OP2 P OP3   109.5
OP2 P O5' 107.5 109.5
P OP2 HOP2 109.5 114.0
OP3 P O5'   109.5
P OP3 HOP3   114.1
P O5' C5' 123.6 123.0
O5' C5' C4' 112.4 109.5
O5' C5' H5' 108.9 109.5
O5' C5' H5'' 109.2 109.5
C4' C5' H5' 108.4 109.4
C4' C5' H5'' 108.9 109.5
C5' C4' O4' 111.4 110.7
C5' C4' C3' 114.2 110.6
C5' C4' H4' 108.3 110.6
H5' C5' H5'' 109.0 109.5
O4' C4' C3' 105.2 103.5
O4' C4' H4' 108.6 110.6
C4' O4' C1' 108.5 107.0
C3' C4' H4' 108.9 110.7
C4' C3' O3' 111.5 110.9
C4' C3' C2' 99.5 102.1
C4' C3' H3' 110.5 110.9
O4' C1' C2' 104.8 107.3
O4' C1' N9 108.7 109.9
O4' C1' H1' 110.3 109.9
O3' C3' C2' 113.8 110.9
O3' C3' H3' 108.3 110.8
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 113.1 111.0
C3' C2' C1' 99.8 104.2
C3' C2' H2' 107.9 110.5
C3' C2' H2'' 114.9 110.5
C1' C2' H2' 108.6 110.5
C1' C2' H2'' 113.9 110.4
C2' C1' N9 111.8 109.9
C2' C1' H1' 109.7 109.9
H2' C2' H2'' 111.1 110.6
N9 C1' H1' 111.3 110.0
C1' N9 C8 128.9 126.3
C1' N9 C4 126.8 126.3
C8 N9 C4 104.2 107.5
N9 C8 N7 116.2 109.8
N9 C8 H8 122.2 125.1
N9 C4 C5 106.3 106.1
N9 C4 N3 125.9 134.2
N7 C8 H8 121.6 125.1
C8 N7 C5 102.2 109.3
N7 C5 C6 129.4 134.1
N7 C5 C4 111.1 107.2
C6 C5 C4 119.6 118.6
C5 C6 S6 127.9 120.8
C5 C6 N1 111.9 118.3
C5 C4 N3 127.8 119.7
S6 C6 N1 120.2 120.8
C6 N1 C2 124.9 120.4
C6 N1 HN1 115.8 119.9
C2 N1 HN1 119.3 119.8
N1 C2 N2 116.7 119.1
N1 C2 N3 123.5 121.9
N2 C2 N3 119.8 119.1
C2 N2 HN21 118.3 120.0
C2 N2 HN22 120.0 120.0
C2 N3 C4 112.4 121.1
HN21 N2 HN22 121.7 120.0

Torsion Angles for S6G

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3   240.0
OP2 P OP1 O5' 236.3 120.0
OP1 P OP2 HOP2 254.7 180.0
OP3 P OP1 O5'   239.9
OP1 P OP3 HOP3   300.0
OP1 P O5' C5' 42.1 55.0
OP1 P OP2 OP3   120.0
OP1 P OP2 O5' 124.1 240.0
OP3 P OP2 O5'   120.1
OP2 P OP3 HOP3   60.0
OP2 P O5' C5' 172.8 295.0
OP1 P OP3 OP2   240.1
OP1 P OP3 O5'   120.0
OP2 P OP3 O5'   240.0
OP3 P OP2 HOP2   60.0
OP3 P O5' C5'   175.0
OP1 P O5' OP2 229.3 119.9
OP1 P O5' OP3   240.0
OP2 P O5' OP3   120.0
O5' P OP2 HOP2 130.6 300.0
O5' P OP3 HOP3   180.0
P O5' C5' C4' 182.1 180.0
P O5' C5' H5' 62.0 300.0
P O5' C5' H5'' 303.1 60.0
HOP2 OP2 P OP3   60.0
HOP2 OP2 P O5' 130.6 300.0
HOP3 OP3 P O5'   180.0
C4' C5' O5' H5' 120.1 240.0
C4' C5' O5' H5'' 239.0 120.0
O5' C5' C4' O4' 300.6 66.5
O5' C5' C4' C3' 59.7 180.5
O5' C5' C4' H4' 181.2 303.5
H5' C5' O5' H5'' 118.9 240.0
O5' C5' C4' H5' 239.6 120.0
O5' C5' C4' H5'' 121.1 240.0
H5' C5' C4' H5'' 241.5 120.0
O4' C4' C5' C3' 240.9 245.9
O4' C4' C5' H4' 119.4 122.9
C5' C4' O4' C1' 111.2 158.5
C3' C4' C5' H4' 238.5 237.0
C5' C4' C3' O3' 154.3 86.3
C5' C4' C3' C2' 274.7 204.4
C5' C4' C3' H3' 33.8 322.7
O5' C5' H5' C4' 122.6 240.0
O5' C5' H5' H5'' 241.0 120.0
C4' C5' H5' H5'' 118.4 240.0
H5' C5' C4' O4' 61.0 306.5
H5' C5' C4' C3' 180.1 60.6
H5' C5' C4' H4' 301.6 183.5
O5' C5' H5'' C4' 236.9 120.0
O5' C5' H5'' H5' 118.8 240.0
C4' C5' H5'' H5' 241.9 120.0
H5'' C5' C4' O4' 179.5 186.5
H5'' C5' C4' C3' 298.6 300.5
H5'' C5' C4' H4' 60.1 63.5
O4' C4' C5' H5' 61.0 306.5
O4' C4' C5' H5'' 179.5 186.5
C5' C4' O4' C3' 124.3 118.5
C5' C4' O4' H4' 240.8 237.1
C3' C4' O4' H4' 116.5 118.6
O4' C4' C3' O3' 276.8 204.8
O4' C4' C3' C2' 37.2 323.0
O4' C4' C3' H3' 156.3 81.2
C4' O4' C1' C2' 343.5 333.5
C4' O4' C1' N9 223.8 214.1
C4' O4' C1' H1' 101.5 92.9
C3' C4' C5' H5' 180.1 60.6
C3' C4' C5' H5'' 298.6 300.5
C5' C4' C3' O4' 237.5 241.5
C5' C4' C3' H4' 121.2 122.9
O4' C4' C3' H4' 243.7 241.4
C3' C4' O4' C1' 347.0 40.1
O3' C3' C4' C2' 239.7 241.8
O3' C3' C4' H3' 120.5 123.6
C4' C3' O3' HO3' 175.9 180.0
C2' C3' C4' H3' 240.9 241.7
C4' C3' C2' C1' 314.5 20.9
C4' C3' C2' H2' 67.9 139.5
C4' C3' C2' H2'' 192.3 262.2
H4' C4' C5' H5' 301.6 183.5
H4' C4' C5' H5'' 60.1 63.5
C5' C4' H4' O4' 121.2 122.9
C5' C4' H4' C3' 235.3 237.1
O4' C4' H4' C3' 114.1 114.1
H4' C4' O4' C1' 230.5 281.4
H4' C4' C3' O3' 33.1 323.4
H4' C4' C3' C2' 153.5 81.5
H4' C4' C3' H3' 272.6 199.8
C1' O4' C4' C3' 347.0 40.1
C1' O4' C4' H4' 230.5 281.4
C3' C2' C1' O4' 39.5 2.0
O4' C1' C2' H2' 286.7 243.3
O4' C1' C2' H2'' 162.4 120.7
C2' C1' O4' N9 119.7 119.4
C2' C1' O4' H1' 242.0 240.6
N9 C1' O4' H1' 122.3 121.2
O4' C1' N9 C8 63.8 23.6
O4' C1' N9 C4 244.4 203.2
O3' C3' C4' H4' 33.1 323.4
C4' C3' O3' C2' 111.5 112.7
C4' C3' O3' H3' 238.2 236.4
C2' C3' O3' H3' 126.6 123.7
O3' C3' C2' C1' 73.2 139.1
O3' C3' C2' H2' 186.6 257.7
O3' C3' C2' H2'' 311.0 20.4
C2' C3' C4' H4' 153.5 81.5
C4' C3' C2' O3' 241.3 241.8
C4' C3' C2' H3' 117.2 118.2
O4' C1' C2' C3' 39.5 2.0
O3' C3' C2' H3' 235.9 236.4
C2' C3' O3' HO3' 64.3 67.3
C1' C2' C3' H2' 246.7 241.4
C1' C2' C3' H2'' 122.2 118.7
C3' C2' C1' N9 157.1 121.4
C3' C2' C1' H1' 281.1 242.6
H2' C2' C3' H2'' 235.5 237.3
H3' C3' C4' H4' 272.6 199.8
C4' C3' H3' O3' 122.4 123.6
C4' C3' H3' C2' 249.5 247.3
O3' C3' H3' C2' 127.0 123.6
H3' C3' O3' HO3' 297.7 303.7
H3' C3' C2' C1' 197.3 262.7
H3' C3' C2' H2' 310.6 21.3
H3' C3' C2' H2'' 75.1 144.0
HO3' O3' C3' C2' 64.3 67.3
HO3' O3' C3' H3' 297.7 303.7
O4' C1' C2' N9 242.4 240.6
O4' C1' C2' H1' 118.4 119.4
C1' C2' C3' H3' 197.3 262.7
C3' C2' C1' H2' 112.8 118.7
C3' C2' C1' H2'' 237.1 241.3
H2' C2' C1' H2'' 124.3 122.6
N9 C1' C2' H1' 236.0 238.8
C2' C1' N9 C8 308.6 265.7
C2' C1' N9 C4 129.2 85.4
H2' C2' C3' H3' 310.6 21.3
C3' C2' H2' C1' 252.6 245.2
C3' C2' H2' H2'' 126.7 122.7
C1' C2' H2' H2'' 234.1 237.4
H2' C2' C1' N9 44.3 2.8
H2' C2' C1' H1' 168.2 124.0
H2'' C2' C3' H3' 75.1 144.0
C3' C2' H2'' C1' 114.3 114.8
C3' C2' H2'' H2' 237.2 237.3
C1' C2' H2'' H2' 122.9 122.6
H2'' C2' C1' N9 280.0 240.1
H2'' C2' C1' H1' 44.0 1.3
O4' C1' N9 C2' 115.2 117.8
O4' C1' N9 H1' 238.3 238.9
N9 C1' C2' H2' 44.3 2.8
N9 C1' C2' H2'' 280.0 240.1
C2' C1' N9 H1' 123.1 121.1
C8 N9 C1' C4 179.4 180.3
C1' N9 C8 N7 180.5 180.0
C1' N9 C8 H8 0.4 0.0
C1' N9 C4 C5 179.5 179.9
C1' N9 C4 N3 359.5 0.7
O4' C1' H1' C2' 245.1 242.2
O4' C1' H1' N9 120.8 121.1
H1' C1' C2' H2' 168.2 124.0
H1' C1' C2' H2'' 44.0 1.3
C2' C1' H1' N9 235.7 238.9
H1' C1' N9 C8 185.5 144.6
H1' C1' N9 C4 6.1 324.3
C8 N9 C1' H1' 185.5 144.6
C1' N9 C8 C4 180.5 179.7
C8 N9 C4 C5 360.0 359.6
C8 N9 C4 N3 179.9 180.5
N7 C8 N9 H8 180.1 180.0
N9 C8 N7 C5 360.0 0.0
C4 N9 C1' H1' 6.1 324.3
C1' N9 C4 C8 179.5 180.3
C4 N9 C8 N7 0.0 0.2
C4 N9 C8 H8 179.9 180.3
N7 C5 C4 N9 0.0 0.4
C6 C5 C4 N9 180.0 180.1
C5 C4 N9 N3 180.0 179.2
C2 N3 C4 N9 180.0 179.6
N7 C8 N9 C4 0.0 0.2
N9 C8 N7 H8 179.9 180.0
C8 N7 C5 C6 180.0 180.1
C8 N7 C5 C4 360.0 359.8
H8 C8 N9 C4 179.9 180.3
N9 C8 H8 N7 180.2 180.0
H8 C8 N7 C5 180.1 180.0
N9 C4 C5 N7 0.0 0.4
C5 N7 C8 H8 180.1 180.0
C6 C5 N7 C4 180.0 180.3
N7 C5 C6 S6 359.8 359.9
N7 C5 C6 N1 180.0 180.0
N7 C5 C4 N3 180.1 179.7
N9 C4 C5 C6 180.0 180.1
N7 C5 C6 C4 180.0 179.6
C6 C5 C4 N3 0.0 359.4
S6 C6 C5 N1 179.8 179.9
C5 C6 N1 C2 359.9 360.0
C5 C6 N1 HN1 179.9 179.9
N9 C4 C5 N3 180.0 180.7
N7 C5 C4 C6 180.0 180.3
C4 C5 C6 S6 179.8 180.3
C4 C5 C6 N1 0.0 0.3
C2 N3 C4 C5 360.0 0.5
S6 C6 C5 C4 179.8 180.3
C5 C6 S6 N1 180.2 180.1
S6 C6 N1 C2 180.1 180.0
S6 C6 N1 HN1 0.1 360.0
N1 C6 C5 C4 0.0 0.3
C5 C6 N1 S6 179.8 179.9
C2 N1 C6 HN1 180.0 180.0
C6 N1 C2 N2 180.4 180.0
C6 N1 C2 N3 0.1 360.0
C6 N1 C2 HN1 180.0 180.0
N2 C2 N1 N3 180.3 180.1
N1 C2 N2 HN21 172.8 359.9
N1 C2 N2 HN22 352.7 180.0
N1 C2 N3 C4 360.0 359.8
C6 N1 HN1 C2 180.0 180.0
HN1 N1 C2 N2 0.4 0.1
HN1 N1 C2 N3 180.1 180.0
N2 C2 N1 HN1 0.4 0.1
N1 C2 N2 N3 179.7 179.9
N2 C2 N3 C4 179.6 179.7
HN21 N2 C2 HN22 180.1 180.0
N9 C4 N3 C2 180.0 179.6
C5 C4 N3 C2 360.0 0.5
N3 C2 N1 HN1 180.1 180.0
N1 C2 N3 N2 180.4 180.1
N3 C2 N2 HN21 353.2 180.0
N3 C2 N2 HN22 173.0 0.0
HN21 N2 C2 N3 353.2 180.0
C2 N2 HN21 HN22 179.9 180.0
HN22 N2 C2 N3 173.0 0.0
C2 N2 HN22 HN21 180.1 180.0
N9 C4 N3 C5 180.0 179.1