PDB Chemical Component S65
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for S65
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CL1 |
C5 |
1.757 |
1.803 |
| CL |
C4 |
1.793 |
1.803 |
| CL6 |
C9 |
1.768 |
1.803 |
| C5 |
C9 |
1.554 |
1.575 |
| C5 |
C3 |
1.549 |
1.554 |
| C5 |
C6 |
1.521 |
1.532 |
| CL5 |
C9 |
1.766 |
1.803 |
| C9 |
C8 |
1.546 |
1.563 |
| C3 |
C4 |
1.531 |
1.524 |
| C3 |
C2 |
1.558 |
1.548 |
| CL2 |
C6 |
1.700 |
1.736 |
| C4 |
C |
1.521 |
1.546 |
| C6 |
C7 |
1.322 |
1.321 |
| C2 |
C8 |
1.554 |
1.569 |
| C2 |
C1 |
1.538 |
1.542 |
| C8 |
C7 |
1.513 |
1.535 |
| C8 |
CL4 |
1.760 |
1.803 |
| C7 |
CL3 |
1.706 |
1.736 |
| C |
C1 |
1.454 |
1.531 |
| C |
O |
1.448 |
1.418 |
| C1 |
O |
1.446 |
1.438 |
| C1 |
H1 |
1.100 |
1.090 |
| C2 |
H2 |
1.100 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.090 |
| C |
H5 |
1.100 |
1.091 |
Bond Angles for S65
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL |
C4 |
H4 |
107.8 |
109.8 |
| C6 |
C5 |
C9 |
98.3 |
99.8 |
| C5 |
C9 |
C8 |
92.5 |
93.2 |
| C5 |
C3 |
H3 |
112.2 |
111.6 |
| C5 |
C6 |
C7 |
107.5 |
108.6 |
| C9 |
C8 |
CL4 |
115.7 |
117.2 |
| C3 |
C4 |
C |
105.8 |
108.2 |
| C4 |
C3 |
H3 |
112.5 |
111.1 |
| C3 |
C4 |
H4 |
111.0 |
109.8 |
| C3 |
C2 |
C8 |
102.7 |
103.2 |
| C3 |
C2 |
H2 |
109.1 |
114.0 |
| C4 |
C |
O |
107.9 |
121.1 |
| C |
C4 |
H4 |
111.2 |
109.9 |
| C4 |
C |
H5 |
120.5 |
116.7 |
| C6 |
C7 |
CL3 |
127.9 |
125.9 |
| C2 |
C8 |
C7 |
110.2 |
103.2 |
| C2 |
C8 |
CL4 |
114.2 |
116.4 |
| C8 |
C2 |
H2 |
109.2 |
113.3 |
| C2 |
C1 |
O |
117.4 |
115.5 |
| C2 |
C1 |
H1 |
117.8 |
118.0 |
| C8 |
C7 |
CL3 |
124.5 |
126.2 |
| C |
C1 |
O |
59.9 |
57.0 |
| C |
C1 |
H1 |
119.5 |
122.3 |
| C1 |
O |
C |
60.3 |
64.8 |
| O |
C |
H5 |
122.2 |
119.2 |
| O |
C1 |
H1 |
119.7 |
120.1 |
Torsion Angles for S65
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL1 |
C5 |
C3 |
H3 |
41.4 |
45.4 |
| CL |
C4 |
C3 |
H3 |
344.2 |
19.1 |
| C3 |
C4 |
CL |
H4 |
239.9 |
239.2 |
| C |
C4 |
CL |
H4 |
123.1 |
120.7 |
| CL |
C4 |
C |
H5 |
347.1 |
326.9 |
| C9 |
C5 |
C3 |
H3 |
276.4 |
279.4 |
| C9 |
C5 |
C6 |
C7 |
324.8 |
327.1 |
| C5 |
C9 |
C8 |
CL4 |
182.4 |
183.7 |
| C5 |
C3 |
C4 |
C |
231.4 |
263.1 |
| C4 |
C3 |
C5 |
H3 |
233.8 |
235.5 |
| C5 |
C3 |
C4 |
H4 |
352.1 |
23.1 |
| C5 |
C3 |
C2 |
C8 |
0.4 |
355.8 |
| C5 |
C3 |
C2 |
H2 |
244.7 |
232.6 |
| C6 |
C5 |
C9 |
C8 |
53.2 |
49.3 |
| C6 |
C5 |
C3 |
H3 |
173.6 |
176.4 |
| C5 |
C6 |
C7 |
CL3 |
179.9 |
179.5 |
| C2 |
C8 |
C9 |
CL4 |
236.5 |
232.3 |
| C9 |
C8 |
C2 |
H2 |
77.9 |
90.5 |
| C9 |
C8 |
C7 |
CL3 |
215.8 |
214.0 |
| CL |
C4 |
C3 |
H4 |
118.2 |
120.8 |
| C5 |
C3 |
C4 |
H3 |
126.1 |
124.7 |
| C4 |
C3 |
C2 |
C8 |
244.4 |
238.2 |
| C4 |
C3 |
C2 |
H2 |
128.7 |
115.0 |
| C3 |
C4 |
C |
O |
81.8 |
46.9 |
| C |
C4 |
C3 |
H4 |
239.3 |
240.0 |
| C3 |
C4 |
C |
H5 |
228.9 |
207.3 |
| C3 |
C2 |
C8 |
C7 |
65.5 |
70.1 |
| C3 |
C2 |
C8 |
CL4 |
197.8 |
198.6 |
| C8 |
C2 |
C3 |
H2 |
115.7 |
123.3 |
| C3 |
C2 |
C1 |
O |
294.8 |
299.1 |
| C3 |
C2 |
C1 |
H1 |
140.3 |
147.0 |
| CL2 |
C6 |
C7 |
CL3 |
359.8 |
359.5 |
| CL |
C4 |
C |
H4 |
238.8 |
239.4 |
| C |
C4 |
C3 |
H3 |
105.4 |
138.3 |
| C3 |
C4 |
C |
H4 |
120.6 |
119.9 |
| C4 |
C |
C1 |
O |
99.8 |
117.0 |
| C4 |
C |
C1 |
H1 |
209.1 |
224.3 |
| C1 |
O |
C |
C4 |
257.5 |
269.8 |
| O |
C |
C4 |
H5 |
212.9 |
199.6 |
| C7 |
C6 |
C5 |
C9 |
324.8 |
327.1 |
| C2 |
C8 |
C7 |
C6 |
291.5 |
289.8 |
| C8 |
C7 |
C6 |
CL3 |
179.8 |
180.1 |
| C5 |
C9 |
C8 |
C2 |
58.9 |
56.0 |
| C9 |
C8 |
C2 |
CL4 |
124.5 |
128.2 |
| C3 |
C2 |
C8 |
H2 |
244.3 |
236.3 |
| C8 |
C2 |
C1 |
O |
50.0 |
48.4 |
| C8 |
C2 |
C1 |
H1 |
255.5 |
256.4 |
| C2 |
C8 |
C7 |
CL3 |
111.3 |
109.8 |
| C |
C1 |
C2 |
O |
65.2 |
61.8 |
| C |
C1 |
C2 |
H1 |
219.7 |
213.9 |
| C2 |
C1 |
O |
C |
97.0 |
97.4 |
| O |
C1 |
C2 |
H1 |
154.5 |
152.1 |
| C5 |
C9 |
C8 |
C7 |
306.4 |
310.2 |
| C6 |
C7 |
C8 |
CL3 |
180.2 |
179.9 |
| C2 |
C8 |
C7 |
CL4 |
131.5 |
128.6 |
| C7 |
C8 |
C2 |
H2 |
181.1 |
193.9 |
| C2 |
C8 |
CL4 |
C7 |
230.5 |
238.1 |
| CL4 |
C8 |
C2 |
H2 |
313.4 |
322.3 |
| CL4 |
C8 |
C7 |
CL3 |
339.8 |
341.2 |
| C2 |
C1 |
C |
O |
248.7 |
251.7 |
| C2 |
C1 |
C |
H1 |
139.5 |
144.4 |
| C1 |
O |
C |
C1 |
360.0 |
-0.0 |
| O |
C1 |
C |
H1 |
250.8 |
252.7 |
| O |
C |
C4 |
H4 |
321.2 |
287.0 |
| C4 |
C |
O |
H5 |
146.4 |
160.0 |
| O |
C |
C1 |
O |
-0.0 |
-0.0 |
| O |
C |
C1 |
H1 |
109.2 |
107.3 |
| C |
O |
C1 |
H1 |
251.0 |
248.9 |
| C4 |
C |
O |
C1 |
257.5 |
269.8 |
| C2 |
C1 |
O |
H1 |
206.0 |
208.5 |
| C |
C1 |
O |
H1 |
109.0 |
111.1 |
| C1 |
O |
C |
H5 |
111.0 |
109.8 |
| C2 |
C1 |
H1 |
O |
153.9 |
150.7 |
| C |
C1 |
H1 |
O |
289.9 |
292.3 |
| H1 |
C1 |
O |
C |
251.0 |
248.9 |
| C3 |
C2 |
H2 |
C8 |
111.5 |
117.6 |
| H2 |
C2 |
C8 |
C7 |
181.1 |
193.9 |
| H2 |
C2 |
C8 |
CL4 |
313.4 |
322.3 |
| H2 |
C2 |
C1 |
O |
177.4 |
173.2 |
| H2 |
C2 |
C1 |
H1 |
22.9 |
21.1 |
| H3 |
C3 |
C4 |
C |
105.4 |
138.3 |
| H3 |
C3 |
C4 |
H4 |
226.1 |
258.3 |
| H3 |
C3 |
C2 |
C8 |
121.0 |
116.2 |
| H3 |
C3 |
C2 |
H2 |
5.3 |
352.9 |
| C3 |
C4 |
H4 |
C |
242.5 |
241.1 |
| H4 |
C4 |
C3 |
H3 |
226.1 |
258.3 |
| H4 |
C4 |
C |
O |
321.2 |
287.0 |
| H4 |
C4 |
C |
H5 |
108.3 |
87.5 |
| C4 |
C |
H5 |
O |
217.6 |
199.2 |
| H5 |
C |
C4 |
H4 |
108.3 |
87.5 |
| H5 |
C |
C1 |
O |
248.7 |
252.5 |
| H5 |
C |
C1 |
H1 |
357.9 |
359.8 |