PDB Chemical Component S53

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for S53

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.360 1.318
N1 C6 1.353 1.322
C23 C2 1.519 1.507
C2 C3 1.419 1.388
C3 C4 1.402 1.407
C3 N9 1.364 1.383
C5 C4 1.400 1.394
C4 C11 1.398 1.471
C6 C5 1.401 1.369
C5 H5 1.080 1.080
C6 H6 1.080 1.080
C12 N9 1.353 1.401
N9 C10 1.325 1.361
C11 C10 1.374 1.386
C10 O37 1.371 1.351
C11 C52 1.492 1.464
C13 C12 1.414 1.389
C12 C17 1.409 1.389
C14 C13 1.397 1.381
C13 H13 1.080 1.080
C14 C15 1.392 1.383
C14 H14 1.080 1.081
C15 C16 1.396 1.383
C15 H15 1.080 1.080
C16 C17 1.397 1.382
C16 H16 1.080 1.080
C17 H17 1.080 1.080
C24 C23 1.533 1.507
C23 H23 1.100 1.090
C23 H23A 1.100 1.089
C31 C24 1.409 1.382
C27 C24 1.403 1.383
C28 C27 1.407 1.382
C27 H27 1.080 1.080
C29 C28 1.414 1.382
C28 H28 1.080 1.080
C29 C30 1.399 1.382
C29 H29 1.080 1.080
C30 C31 1.401 1.383
C30 H30 1.080 1.081
C31 H31 1.080 1.079
O37 C38 1.357 1.359
C38 C43 1.389 1.387
C38 C39 1.390 1.387
C39 C40 1.388 1.383
C39 H39 1.079 1.080
C40 F51 1.339 1.351
C40 C41 1.393 1.385
C42 C41 1.397 1.382
C41 H41 1.080 1.080
C43 C42 1.396 1.382
C42 H42 1.080 1.081
C47 C43 1.512 1.507
C47 H47 1.100 1.090
C47 H47A 1.100 1.090
C47 H47B 1.100 1.091
O54 C52 1.225 1.218
C52 N53 1.331 1.348
N53 C55 1.465 1.471
N53 C59 1.480 1.471
C55 C56 1.519 1.533
C55 H55 1.100 1.089
C55 H55A 1.100 1.090
C56 N57 1.447 1.469
C56 H56 1.100 1.090
C56 H56A 1.100 1.090
C58 N57 1.443 1.469
N57 HN57 1.000 1.009
C59 C58 1.524 1.528
C58 H58 1.100 1.089
C58 H58A 1.100 1.090
C59 H59 1.100 1.090
C59 H59A 1.100 1.090

Bond Angles for S53

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 123.6 122.5
N1 C2 C3 118.0 120.3
N1 C6 C5 120.4 121.1
N1 C6 H6 119.8 119.4
C2 C3 C4 119.2 118.4
C2 C3 N9 134.4 133.8
C4 C3 N9 106.4 107.8
C3 C4 C11 107.0 106.2
C3 N9 C10 110.6 110.4
C5 C4 C11 132.0 135.0
C4 C11 C10 107.0 106.4
C4 C11 C52 122.3 126.8
C6 C5 H5 121.1 120.6
N9 C10 O37 123.1 125.3
C11 C10 O37 127.8 125.4
C10 O37 C38 123.8 118.0
C11 C52 N53 126.7 120.0
C13 C12 C17 115.6 119.9
C12 C17 C16 122.3 119.9
C12 C17 H17 118.8 120.0
C14 C13 H13 118.6 120.0
C15 C14 H14 120.2 119.9
C14 C15 C16 119.4 120.1
C14 C15 H15 120.3 120.0
C16 C15 H15 120.3 119.9
C15 C16 C17 120.3 120.1
C15 C16 H16 119.9 120.0
C17 C16 H16 119.9 119.9
C16 C17 H17 118.9 120.1
C24 C23 H23 109.3 109.4
C24 C23 H23A 109.3 109.5
H23 C23 H23A 109.7 109.5
C28 C27 H27 119.9 120.0
C29 C28 H28 119.6 120.0
C30 C29 H29 120.5 120.0
C29 C30 C31 119.9 120.0
C29 C30 H30 120.0 120.0
C31 C30 H30 120.1 120.0
C30 C31 H31 119.1 120.1
O37 C38 C43 119.8 120.0
O37 C38 C39 119.0 120.0
C39 C38 C43 121.1 120.0
C38 C43 C42 119.4 119.9
C38 C39 C40 119.4 119.9
C38 C39 H39 120.3 120.1
C40 C39 H39 120.3 120.0
C39 C40 F51 118.6 120.0
C39 C40 C41 120.2 120.0
C41 C40 F51 121.1 120.0
C40 C41 H41 119.9 119.9
C42 C41 H41 119.9 120.0
C43 C42 H42 120.1 119.9
H47 C47 H47A 109.5 109.5
H47 C47 H47B 109.4 109.5
H47A C47 H47B 109.5 109.4
C52 N53 C55 122.9 120.9
C52 N53 C59 119.3 120.9
C55 N53 C59 117.8 118.3
N53 C55 C56 106.0 108.5
N53 C55 H55 110.6 109.6
N53 C55 H55A 110.7 109.6
N53 C59 C58 111.0 108.8
N53 C59 H59 108.9 109.6
N53 C59 H59A 108.9 109.6
C56 C55 H55 110.7 109.6
C56 C55 H55A 110.7 109.6
C55 C56 N57 111.2 109.3
C55 C56 H56 108.9 109.5
C55 C56 H56A 108.9 109.5
H55 C55 H55A 108.2 109.8
N57 C56 H56 108.9 109.5
N57 C56 H56A 108.9 109.5
C56 N57 HN57 106.7 111.0
H56 C56 H56A 110.0 109.5
C58 N57 HN57 106.7 111.0
C59 C58 H58 109.4 109.6
C59 C58 H58A 109.4 109.4
H58 C58 H58A 109.6 109.5
H59 C59 H59A 110.0 109.8

Torsion Angles for S53

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 C5 0.1 0.0
C2 N1 C6 H6 180.1 180.0
N1 C2 C3 C4 0.0 0.0
N1 C2 C3 N9 180.0 180.0
C6 N1 C2 C3 0.2 360.0
N1 C6 C5 H5 179.5 180.0
C3 C2 N1 C6 0.2 360.0
C4 C3 C2 N9 180.0 180.0
C2 C3 C4 C11 181.0 180.0
C2 C3 N9 C10 181.1 180.0
C2 C3 C4 N9 180.0 180.0
C4 C3 N9 C10 1.1 360.0
C5 C4 C3 C11 178.5 180.0
C3 C4 C11 C10 357.3 0.0
C3 C4 C11 C52 184.3 179.9
C2 C3 N9 C4 180.0 180.0
N9 C3 C4 C11 1.1 360.0
C3 N9 C10 O37 180.7 179.9
N1 C6 C5 C4 359.5 360.0
C5 C4 C3 N9 179.6 180.0
C3 C4 C5 C11 181.9 180.0
C5 C4 C11 C10 179.0 180.0
C5 C4 C11 C52 6.1 359.9
C11 C4 C3 N9 1.1 360.0
C4 C11 C10 O37 179.7 180.1
C4 C11 C52 N53 291.7 265.8
N1 C6 C5 H6 180.0 180.0
C6 C5 C4 C11 178.8 180.0
H5 C5 C4 C11 358.8 0.0
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 H5 359.5 360.0
C12 N9 C10 O37 1.5 360.0
C4 C11 C10 N9 3.5 360.0
C11 C10 N9 O37 176.4 180.1
N9 C10 O37 C38 143.5 269.2
C4 C11 C10 C52 187.9 179.9
N9 C10 C11 O37 183.8 179.9
C11 C10 O37 C38 327.8 89.1
C10 O37 C38 C43 119.6 184.1
C10 O37 C38 C39 300.4 4.4
C4 C11 C52 C10 171.1 180.1
C52 C11 C10 O37 351.8 0.1
C11 C52 N53 C55 359.6 182.2
C11 C52 N53 C59 179.0 1.9
C13 C12 C17 C16 0.8 359.5
C13 C12 C17 H17 180.8 179.8
C15 C16 C17 C12 359.3 0.6
C12 C17 C16 H16 179.3 180.2
C16 C17 C12 H17 180.0 179.7
C14 C13 C12 C17 359.6 0.2
H13 C13 C12 C17 179.6 180.2
C15 C14 C13 H13 179.7 180.0
C16 C15 C14 H15 180.0 180.0
C14 C15 C16 C17 360.0 359.7
C14 C15 C16 H16 180.0 180.0
H14 C14 C13 H13 359.7 0.0
H14 C14 C15 C16 180.5 180.0
H14 C14 C15 H15 0.4 0.0
C12 C17 C16 C15 359.3 0.6
C16 C15 C14 H14 180.5 180.0
C14 C15 C16 H15 180.0 180.0
C17 C16 C15 H16 180.0 179.6
C15 C16 C17 H17 179.3 180.3
H15 C15 C14 H14 0.4 0.0
C14 C15 H15 C16 180.0 180.0
H15 C15 C16 C17 180.0 179.7
H15 C15 C16 H16 0.0 0.1
C12 C17 C16 H17 180.0 180.3
C17 C16 C15 H15 180.0 179.7
C15 C16 C17 H16 180.0 180.4
H16 C16 C15 H15 0.0 0.1
C15 C16 H16 C17 180.0 179.6
H16 C16 C17 H17 359.3 359.9
C12 C17 H17 C16 180.0 179.7
H17 C17 C16 H16 359.3 359.9
H23 C23 C24 H23A 120.0 120.0
C24 C23 H23 H23A 240.2 240.0
C24 C23 H23A H23 119.8 120.0
C31 C24 C23 H23 270.1 153.6
C31 C24 C23 H23A 150.0 33.6
C27 C24 C23 H23 90.4 333.9
C27 C24 C23 H23A 330.3 213.9
C29 C28 C27 H27 180.1 180.0
H28 C28 C27 H27 0.1 0.1
C30 C29 C28 H28 180.1 180.0
C31 C30 C29 H30 180.0 179.7
C29 C30 C31 H31 179.8 180.0
H29 C29 C28 H28 0.1 359.9
H29 C29 C30 C31 180.0 179.7
H29 C29 C30 H30 360.0 0.0
C31 C30 C29 H29 180.0 179.7
C29 C30 C31 H30 180.0 180.3
H30 C30 C29 H29 360.0 0.0
C29 C30 H30 C31 180.0 179.7
H30 C30 C31 H31 359.8 359.7
H31 C31 C30 H30 359.8 359.7
C39 C38 O37 C43 180.8 180.3
O37 C38 C43 C42 180.8 179.8
O37 C38 C39 C40 179.2 180.0
O37 C38 C39 H39 359.2 359.9
O37 C38 C43 C39 180.8 180.3
C43 C38 C39 C40 0.0 0.3
C43 C38 C39 H39 180.0 180.2
C38 C43 C42 H42 180.2 180.3
O37 C38 C39 C43 179.2 179.7
C39 C38 C43 C42 359.9 359.5
C40 C39 C38 H39 180.0 180.1
C38 C39 C40 F51 180.3 179.9
C38 C39 C40 C41 359.9 0.0
C40 C39 C38 C43 0.0 0.3
C38 C39 C40 H39 180.0 179.9
C41 C40 C39 F51 179.5 180.1
C39 C40 C41 H41 180.3 180.0
H39 C39 C38 C43 180.0 180.2
C38 C39 H39 C40 180.0 180.1
H39 C39 C40 F51 0.3 0.0
H39 C39 C40 C41 179.8 180.1
F51 C40 C39 H39 0.3 0.0
C39 C40 F51 C41 179.5 180.1
F51 C40 C41 H41 359.8 0.1
C41 C40 C39 H39 179.8 180.1
C39 C40 C41 F51 180.5 179.9
C42 C41 C40 H41 180.0 179.9
C38 C43 C42 C41 0.2 0.5
C42 C41 C40 F51 179.8 180.0
C40 C41 C42 H41 180.0 180.1
H41 C41 C40 F51 359.8 0.1
C43 C42 C41 H41 179.7 179.7
H42 C42 C41 H41 359.7 360.0
C47 C43 C42 H42 0.1 0.0
H47A C47 H47 H47B 120.0 120.0
H47 C47 H47A H47B 240.0 239.9
H47 C47 H47B H47A 120.0 120.0
O54 C52 N53 C55 180.6 2.2
O54 C52 N53 C59 359.9 181.9
C55 N53 C52 C59 180.7 180.3
C52 N53 C55 C56 235.0 128.8
C52 N53 C55 H55 355.1 248.5
C52 N53 C55 H55A 115.0 9.1
C52 N53 C59 C58 128.2 231.1
C52 N53 C59 H59 248.2 350.9
C52 N53 C59 H59A 8.2 111.5
C52 N53 C55 C59 179.4 179.7
C55 N53 C59 C58 307.6 50.8
C55 N53 C59 H59 67.6 170.6
C55 N53 C59 H59A 187.6 291.3
C56 C55 N53 H55 240.0 240.3
C56 C55 N53 H55A 120.0 119.7
N53 C55 C56 N57 306.1 53.8
N53 C55 C56 H56 66.1 173.8
N53 C55 C56 H56A 186.0 293.9
H55 C55 N53 H55A 240.0 239.4
C52 N53 C59 C55 180.6 180.3
C59 N53 C55 C56 55.7 309.1
C59 N53 C55 H55 175.7 68.8
C59 N53 C55 H55A 295.7 189.4
N53 C59 C58 H58 284.3 186.4
N53 C59 C58 H58A 164.4 66.3
H59 C59 N53 H59A 240.0 239.4
C56 C55 N53 C59 55.7 309.1
N53 C55 C56 H55 120.0 119.7
N53 C55 C56 H55A 240.0 240.3
H55 C55 C56 H55A 120.0 120.6
N57 C56 C55 H56 240.0 240.0
N57 C56 C55 H56A 120.0 119.9
C55 C56 N57 HN57 176.7 61.0
H56 C56 C55 H56A 240.0 239.9
H55 C55 N53 C59 175.7 68.8
N53 C55 H55 C56 242.8 241.0
N53 C55 H55 H55A 121.4 120.5
C56 C55 H55 H55A 238.6 239.5
H55 C55 C56 N57 186.1 294.1
H55 C55 C56 H56 306.1 54.1
H55 C55 C56 H56A 66.0 174.2
H55A C55 N53 C59 295.7 189.4
N53 C55 H55A C56 117.1 119.0
N53 C55 H55A H55 238.6 239.5
C56 C55 H55A H55 121.5 120.5
H55A C55 C56 N57 66.1 173.5
H55A C55 C56 H56 186.1 293.5
H55A C55 C56 H56A 306.0 53.6
N57 C56 C55 H55 186.1 294.1
N57 C56 C55 H55A 66.1 173.5
C55 C56 N57 H56 120.0 120.0
C55 C56 N57 H56A 240.0 240.0
H56 C56 N57 H56A 120.0 120.1
C58 N57 C56 HN57 240.0 235.9
H56 C56 C55 H55 306.1 54.1
H56 C56 C55 H55A 186.1 293.5
C55 C56 H56 N57 238.6 240.1
C55 C56 H56 H56A 119.3 120.1
N57 C56 H56 H56A 240.7 240.0
H56 C56 N57 HN57 56.7 301.1
H56A C56 C55 H55 66.0 174.2
H56A C56 C55 H55A 306.0 53.6
C55 C56 H56A N57 121.4 119.9
C55 C56 H56A H56 240.7 239.9
N57 C56 H56A H56 119.3 120.0
H56A C56 N57 HN57 296.7 181.0
N53 C59 C58 N57 44.3 306.4
C58 N57 C56 H56 296.7 176.9
C58 N57 C56 H56A 176.7 56.9
C56 N57 C58 HN57 120.0 124.1
HN57 N57 C56 H56 56.7 301.1
HN57 N57 C56 H56A 296.7 181.0
N53 C59 C58 H59 120.0 119.8
N53 C59 C58 H59A 240.0 240.3
C59 C58 N57 HN57 189.9 298.8
H58 C58 C59 H58A 120.0 120.0
H58 C58 N57 HN57 309.9 58.9
C59 C58 H58 H58A 240.1 240.0
H58A C58 N57 HN57 69.8 179.0
C59 C58 H58A H58 119.9 120.1
N53 C59 H59 C58 238.7 240.7
N53 C59 H59 H59A 119.4 120.5
H59 C59 C58 H58 164.4 66.6
H59 C59 C58 H58A 44.4 306.5
N53 C59 H59A C58 121.3 119.2
N53 C59 H59A H59 240.7 239.5
H59A C59 C58 H58 44.3 306.1
H59A C59 C58 H58A 284.4 186.1