PDB Chemical Component S52

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for S52

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.404 1.383
C1 C6 1.401 1.383
O1 C16 1.354 1.351
O1 C26 1.364 1.360
C2 C3 1.405 1.381
C3 C4 1.426 1.389
C4 C5 1.427 1.389
C4 N12 1.366 1.401
C5 C6 1.391 1.381
N12 C13 1.359 1.385
N12 C16 1.326 1.361
C13 C14 1.425 1.403
C13 C17 1.402 1.391
C14 C15 1.395 1.476
C14 C20 1.393 1.393
C15 C16 1.373 1.385
C15 C39 1.507 1.463
C17 C18 1.400 1.379
C18 C19 1.407 1.387
C19 C20 1.398 1.378
C26 C29 1.407 1.387
C26 C33 1.400 1.387
C29 C30 1.402 1.382
C30 C31 1.408 1.384
C31 C32 1.391 1.383
C32 C33 1.398 1.381
C39 N40 1.355 1.348
C39 O41 1.260 1.218
N40 C42 1.466 1.471
N40 C46 1.466 1.471
C42 C43 1.525 1.532
C43 N44 1.444 1.469
N44 C45 1.454 1.469
C45 C46 1.524 1.528
C1 H1 1.080 1.080
C2 H2 1.081 1.080
C3 H3 1.080 1.080
C5 H5 1.080 1.080
C6 H6 1.080 1.080
C17 H17 1.080 1.080
C18 H18 1.080 1.081
C19 H19 1.080 1.080
C20 H20 1.080 1.080
C29 H29 1.080 1.081
C30 H30 1.080 1.080
C31 H31 1.079 1.080
C32 H32 1.080 1.080
C33 H33 1.080 1.080
C42 H42 1.100 1.091
C42 H42A 1.100 1.090
C43 H43 1.100 1.090
C43 H43A 1.100 1.090
N44 HN44 1.000 1.009
C45 H45 1.100 1.090
C45 H45A 1.100 1.089
C46 H46 1.100 1.089
C46 H46A 1.100 1.090

Bond Angles for S52

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 120.3 120.1
C1 C2 C3 119.4 120.1
C2 C1 H1 119.8 119.9
C1 C2 H2 120.3 119.9
C1 C6 C5 119.3 120.0
C6 C1 H1 119.8 120.0
C1 C6 H6 120.3 120.0
C16 O1 C26 121.7 117.9
O1 C16 N12 123.8 125.3
O1 C16 C15 125.6 125.3
O1 C26 C29 117.8 120.0
O1 C26 C33 120.6 120.1
C2 C3 C4 122.5 119.9
C3 C2 H2 120.3 120.0
C2 C3 H3 118.7 120.1
C3 C4 C5 115.2 119.9
C3 C4 N12 125.3 120.0
C4 C3 H3 118.7 120.1
C5 C4 N12 119.5 120.1
C4 C5 C6 123.3 119.9
C4 C5 H5 118.3 120.0
C4 N12 C13 123.8 124.8
C4 N12 C16 125.0 124.8
C6 C5 H5 118.4 120.0
C5 C6 H6 120.4 120.0
C13 N12 C16 109.9 110.4
N12 C13 C14 106.1 107.9
N12 C13 C17 133.9 132.8
N12 C16 C15 110.3 109.3
C14 C13 C17 119.9 119.3
C13 C14 C15 107.2 106.1
C13 C14 C20 121.2 120.1
C13 C17 C18 118.7 120.0
C13 C17 H17 120.7 120.0
C15 C14 C20 131.5 133.8
C14 C15 C16 106.1 106.4
C14 C15 C39 126.0 126.8
C14 C20 C19 118.3 119.7
C14 C20 H20 120.9 120.2
C16 C15 C39 127.3 126.8
C15 C39 N40 126.3 120.0
C15 C39 O41 112.6 120.0
C17 C18 C19 120.8 120.6
C18 C17 H17 120.6 120.0
C17 C18 H18 119.6 119.7
C18 C19 C20 121.1 120.2
C19 C18 H18 119.6 119.7
C18 C19 H19 119.5 119.8
C20 C19 H19 119.5 119.9
C19 C20 H20 120.8 120.1
C29 C26 C33 121.5 119.9
C26 C29 C30 118.0 120.0
C26 C29 H29 121.0 120.1
C26 C33 C32 119.0 120.0
C26 C33 H33 120.5 120.0
C29 C30 C31 121.2 120.0
C30 C29 H29 121.0 119.9
C29 C30 H30 119.4 120.0
C30 C31 C32 119.2 120.1
C31 C30 H30 119.4 119.9
C30 C31 H31 120.4 119.9
C31 C32 C33 121.0 120.1
C32 C31 H31 120.4 120.0
C31 C32 H32 119.5 120.0
C33 C32 H32 119.5 120.0
C32 C33 H33 120.5 120.0
N40 C39 O41 121.0 120.0
C39 N40 C42 126.1 120.9
C39 N40 C46 118.7 120.9
C42 N40 C46 115.3 118.2
N40 C42 C43 108.3 108.5
N40 C42 H42 109.8 109.6
N40 C42 H42A 109.8 109.7
N40 C46 C45 104.8 108.8
N40 C46 H46 111.1 109.6
N40 C46 H46A 111.1 109.6
C42 C43 N44 113.2 109.4
C43 C42 H42 109.9 109.6
C43 C42 H42A 109.9 109.7
C42 C43 H43 108.2 109.5
C42 C43 H43A 108.3 109.5
C43 N44 C45 119.3 111.3
N44 C43 H43 108.3 109.5
N44 C43 H43A 108.2 109.4
C43 N44 HN44 106.3 111.0
N44 C45 C46 109.6 109.4
C45 N44 HN44 106.3 111.0
N44 C45 H45 109.4 109.5
N44 C45 H45A 109.4 109.5
C46 C45 H45 109.4 109.5
C46 C45 H45A 109.4 109.3
C45 C46 H46 111.1 109.6
C45 C46 H46A 111.1 109.5
H42 C42 H42A 109.1 109.8
H43 C43 H43A 110.7 109.6
H45 C45 H45A 109.6 109.6
H46 C46 H46A 107.8 109.8

Torsion Angles for S52

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 C5 0.1 0.1
C6 C1 C2 H1 180.0 180.2
C2 C1 C6 H6 180.1 180.0
C1 C2 C3 C4 358.9 0.0
C3 C2 C1 H2 180.0 179.9
C1 C2 C3 H3 178.9 180.0
C6 C1 C2 C3 1.2 359.9
C2 C1 C6 H1 180.0 179.8
C6 C1 C2 H2 181.2 180.0
C4 C5 C6 C1 358.3 359.9
C1 C6 C5 H5 178.2 180.0
C5 C6 C1 H6 180.0 180.1
C16 O1 C26 C29 129.2 185.0
C16 O1 C26 C33 310.2 4.8
C4 N12 C16 O1 11.8 0.1
C13 N12 C16 O1 179.0 179.8
N12 C16 O1 C15 173.0 179.8
C14 C15 C16 O1 179.9 180.2
O1 C16 C15 C39 351.2 360.0
C26 O1 C16 N12 133.5 270.0
C26 O1 C16 C15 320.5 90.2
C29 C26 O1 C33 179.0 180.2
O1 C26 C29 C30 180.4 180.0
O1 C26 C29 H29 0.4 360.0
O1 C26 C33 C32 179.2 179.7
O1 C26 C33 H33 359.2 359.9
C3 C2 C1 C6 1.2 359.9
C3 C2 C1 H1 181.2 179.7
C1 C2 C3 H2 180.0 180.1
C2 C3 C4 C5 359.6 360.0
C2 C3 C4 N12 183.4 179.9
C4 C3 C2 H3 180.0 180.0
C4 C3 C2 H2 178.9 179.9
C2 C3 C4 H3 180.0 180.0
C5 C4 C3 N12 176.2 180.1
C3 C4 C5 C6 1.8 0.0
C3 C4 C5 H5 181.9 180.0
C3 C4 N12 C13 44.8 115.0
C3 C4 N12 C16 210.3 294.7
C1 C6 C5 C4 358.3 359.9
C3 C4 C5 N12 183.6 179.9
C5 C4 C3 H3 179.6 180.0
C5 C4 N12 C13 228.7 295.0
C5 C4 N12 C16 34.2 114.6
C6 C5 C4 H5 180.0 180.1
C4 C5 C6 H6 178.3 180.0
O1 C16 N12 C4 11.8 0.1
C3 C4 N12 C5 176.0 180.1
N12 C4 C3 H3 3.4 360.0
N12 C4 C5 C6 178.3 180.1
N12 C4 C5 H5 358.3 0.0
C13 N12 C4 C16 194.5 180.3
C4 N12 C13 C14 172.4 180.0
C4 N12 C13 C17 348.6 360.0
C4 N12 C16 C15 185.7 179.9
C5 C6 C1 H1 180.1 180.3
C1 C6 C5 H6 180.0 179.9
C6 C5 C4 N12 178.3 180.1
C4 C5 C6 H5 180.0 179.9
O1 C16 N12 C13 179.0 179.8
C4 N12 C13 C16 167.4 179.7
C13 N12 C16 C15 352.9 359.6
C14 C13 N12 C17 183.8 180.0
N12 C13 C14 C15 358.9 360.0
N12 C13 C14 C20 177.1 180.0
N12 C13 C17 C18 183.8 180.0
N12 C13 C17 H17 3.7 360.0
N12 C16 O1 C26 133.5 270.0
O1 C16 N12 C15 186.1 180.2
C4 N12 C16 C13 192.8 180.3
C16 N12 C13 C14 5.0 0.3
C16 N12 C13 C17 181.1 180.3
C14 C15 C16 N12 6.1 0.4
N12 C16 C15 C39 177.4 180.2
C14 C13 N12 C16 5.0 0.3
N12 C13 C14 C17 176.8 180.0
C14 C13 C17 C18 359.5 360.0
C14 C13 C17 H17 179.5 179.9
C15 C14 C13 C20 181.8 180.0
C13 C14 C15 C16 357.1 359.8
C13 C14 C15 C39 185.7 180.0
C13 C14 C20 C19 359.7 360.0
C13 C14 C20 H20 179.7 180.0
C17 C13 N12 C16 181.1 180.3
N12 C13 C17 C14 184.3 180.0
C17 C13 C14 C15 182.0 180.0
C17 C13 C14 C20 0.3 0.0
C13 C17 C18 C19 0.8 0.0
C18 C17 C13 H17 180.0 180.0
C13 C17 C18 H18 180.8 180.0
O1 C16 C15 C14 179.9 180.2
N12 C16 C15 C14 6.1 0.4
C15 C14 C13 C17 182.0 180.0
C13 C14 C15 C20 178.0 180.0
C15 C14 C20 C19 177.4 180.0
C15 C14 C20 H20 357.4 0.0
C16 C15 C14 C39 171.5 179.8
C14 C15 C39 N40 300.4 275.0
C14 C15 C39 O41 119.9 95.0
C20 C14 C13 C17 0.3 0.0
C13 C14 C20 C15 182.3 180.0
C20 C14 C15 C16 179.2 179.7
C20 C14 C15 C39 7.7 360.0
C18 C19 C20 C14 0.7 0.0
C14 C20 C19 H19 180.7 180.0
C19 C20 C14 H20 180.0 180.0
C15 C16 O1 C26 320.5 90.2
O1 C16 C15 N12 173.8 179.8
C16 C15 C14 C20 179.2 179.7
C14 C15 C16 C39 188.7 180.2
C16 C15 C39 N40 130.7 95.2
C16 C15 C39 O41 310.3 275.3
C39 C15 C14 C20 7.7 360.0
C14 C15 C39 C16 169.7 179.7
N40 C39 C15 O41 180.5 180.0
C15 C39 N40 C42 0.0 174.9
C15 C39 N40 C46 179.9 354.6
C13 C17 C18 H17 180.0 180.0
C17 C18 C19 C20 359.1 360.0
C19 C18 C17 H18 180.0 180.1
C17 C18 C19 H19 179.1 180.0
C14 C20 C19 C18 0.7 0.0
C19 C18 C17 H17 180.8 180.1
C17 C18 C19 H18 180.0 179.9
C20 C19 C18 H19 180.0 180.0
C18 C19 C20 H20 180.6 180.0
C14 C20 C19 H20 180.0 180.0
C20 C19 C18 H18 179.1 180.0
C18 C19 C20 H19 180.0 180.0
O1 C26 C29 C33 181.0 179.8
C29 C26 C33 C32 0.3 359.5
C29 C26 C33 H33 180.3 179.7
C26 C29 C30 C31 0.7 0.0
C30 C29 C26 H29 180.0 180.0
C26 C29 C30 H30 180.6 180.0
O1 C26 C33 C29 179.0 180.2
C33 C26 C29 C30 359.3 0.2
C33 C26 C29 H29 179.4 180.2
C31 C32 C33 C26 0.2 0.5
C26 C33 C32 H32 180.2 180.3
C32 C33 C26 H33 180.0 179.8
C30 C29 C26 C33 359.3 0.2
C26 C29 C30 H29 180.0 180.0
C29 C30 C31 C32 359.7 360.0
C31 C30 C29 H30 180.0 180.0
C29 C30 C31 H31 179.7 180.0
C31 C30 C29 H29 180.6 180.1
C29 C30 C31 H30 180.0 180.0
C30 C31 C32 C33 359.8 359.7
C32 C31 C30 H31 180.0 180.0
C30 C31 C32 H32 179.8 180.0
C26 C33 C32 C31 0.2 0.5
C32 C31 C30 H30 179.8 180.0
C30 C31 C32 H31 180.0 180.0
C33 C32 C31 H32 180.0 179.8
C31 C32 C33 H33 180.2 180.3
C26 C33 C32 H33 180.0 180.2
C33 C32 C31 H31 179.8 179.7
C31 C32 C33 H32 180.0 180.2
C15 C39 N40 O41 179.5 180.0
C42 N40 C39 C46 180.1 180.3
C39 N40 C42 C43 238.4 128.9
C39 N40 C42 H42 358.4 248.5
C39 N40 C42 H42A 118.4 9.1
C39 N40 C46 C45 113.7 231.1
C39 N40 C46 H46 233.7 350.9
C39 N40 C46 H46A 353.7 111.5
C15 C39 O41 N40 180.4 180.0
O41 C39 N40 C42 180.5 354.9
O41 C39 N40 C46 0.4 174.6
C42 N40 C39 O41 180.5 354.9
C39 N40 C42 C46 179.9 179.7
C42 N40 C46 C45 293.6 50.8
C42 N40 C46 H46 53.6 170.6
C42 N40 C46 H46A 173.6 291.2
N40 C42 C43 N44 318.1 53.8
C43 C42 N40 H42 240.0 240.3
C43 C42 N40 H42A 120.0 119.8
N40 C42 C43 H43 78.1 173.8
N40 C42 C43 H43A 198.1 293.9
H42 C42 N40 H42A 240.0 239.4
C46 N40 C39 O41 0.4 174.6
C39 N40 C46 C42 180.1 180.3
C46 N40 C42 C43 58.5 309.1
C46 N40 C42 H42 178.5 68.8
C46 N40 C42 H42A 298.5 189.4
N44 C45 C46 N40 57.2 306.4
N40 C46 C45 H45 297.2 186.4
N40 C46 C45 H45A 177.2 66.3
C45 C46 N40 H46 240.0 240.2
C45 C46 N40 H46A 120.0 119.7
H46 C46 N40 H46A 240.0 239.4
C43 C42 N40 C46 58.5 309.1
N40 C42 C43 H42 120.0 119.7
N40 C42 C43 H42A 240.0 240.2
C42 C43 N44 C45 42.0 296.9
N44 C43 C42 H43 240.0 240.0
N44 C43 C42 H43A 120.0 119.9
C42 C43 N44 HN44 162.0 61.1
H42 C42 C43 H42A 120.0 120.5
H43 C43 C42 H43A 240.0 239.9
N44 C43 C42 H42 198.1 294.1
N44 C43 C42 H42A 78.1 173.5
C42 C43 N44 H43 120.0 120.0
C42 C43 N44 H43A 240.0 240.1
C43 N44 C45 C46 310.0 63.0
C45 N44 C43 HN44 240.0 235.8
C43 N44 C45 H45 69.9 183.0
C43 N44 C45 H45A 190.0 303.2
H43 C43 N44 H43A 120.0 120.1
N40 C46 C45 N44 57.2 306.4
C45 N44 C43 H43 282.0 176.9
C45 N44 C43 H43A 162.0 56.8
C43 N44 C45 HN44 120.0 124.2
C46 C45 N44 H45 240.0 239.9
C46 C45 N44 H45A 120.0 119.8
N44 C45 C46 H46 297.2 186.6
N44 C45 C46 H46A 177.2 66.1
H45 C45 N44 H45A 240.0 239.9
N40 C46 C45 H46 120.0 119.8
N40 C46 C45 H46A 240.0 240.3
C46 C45 N44 HN44 190.0 298.8
N44 C45 C46 H45 120.0 120.0
N44 C45 C46 H45A 240.0 240.1
H45 C45 C46 H45A 120.0 120.1
H46 C46 C45 H46A 120.0 120.5
C2 C1 H1 C6 180.0 180.2
H1 C1 C2 C3 181.2 179.7
H1 C1 C2 H2 1.2 359.8
H1 C1 C6 C5 180.1 180.3
H1 C1 C6 H6 0.1 0.2
H2 C2 C1 C6 181.2 180.0
C1 C2 H2 C3 180.0 179.9
H2 C2 C1 H1 1.2 359.8
H2 C2 C3 C4 178.9 179.9
H2 C2 C3 H3 358.9 359.9
C2 C3 H3 C4 180.0 180.0
H3 C3 C2 H2 358.9 359.9
H3 C3 C4 C5 179.6 180.0
H3 C3 C4 N12 3.4 360.0
H5 C5 C4 N12 358.3 0.0
C4 C5 H5 C6 180.0 180.1
H5 C5 C6 H6 358.2 0.1
C1 C6 H6 C5 180.0 180.1
H6 C6 C1 H1 0.1 0.2
H6 C6 C5 H5 358.2 0.1
C13 C17 H17 C18 180.0 180.0
H17 C17 C18 C19 180.8 180.1
H17 C17 C18 H18 0.9 360.0
C17 C18 H18 C19 180.0 180.1
H18 C18 C17 H17 0.9 360.0
H18 C18 C19 C20 179.1 180.0
H18 C18 C19 H19 359.1 0.0
C18 C19 H19 C20 180.0 180.0
H19 C19 C18 H18 359.1 0.0
H19 C19 C20 H20 0.7 360.0
C14 C20 H20 C19 180.0 180.0
H20 C20 C19 H19 0.7 360.0
H29 C29 C26 C33 179.4 180.2
C26 C29 H29 C30 180.0 180.0
H29 C29 C30 C31 180.6 180.1
H29 C29 C30 H30 0.6 0.0
C29 C30 H30 C31 180.0 180.0
H30 C30 C29 H29 0.6 0.0
H30 C30 C31 C32 179.8 180.0
H30 C30 C31 H31 359.8 0.0
C30 C31 H31 C32 180.0 180.0
H31 C31 C30 H30 359.8 0.0
H31 C31 C32 C33 179.8 179.7
H31 C31 C32 H32 359.8 360.0
C31 C32 H32 C33 180.0 179.8
H32 C32 C31 H31 359.8 360.0
H32 C32 C33 H33 0.2 0.1
C26 C33 H33 C32 180.0 179.8
H33 C33 C32 H32 0.2 0.1
H42 C42 N40 C46 178.5 68.8
N40 C42 H42 C43 240.9 241.0
N40 C42 H42 H42A 120.4 120.5
H42 C42 C43 N44 198.1 294.1
C43 C42 H42 H42A 239.5 239.5
H42 C42 C43 H43 318.1 54.1
H42 C42 C43 H43A 78.1 174.2
H42A C42 N40 C46 298.5 189.4
N40 C42 H42A C43 119.1 119.1
N40 C42 H42A H42 239.6 239.5
H42A C42 C43 N44 78.1 173.5
C43 C42 H42A H42 120.5 120.4
H42A C42 C43 H43 198.1 293.5
H42A C42 C43 H43A 318.1 53.7
C42 C43 H43 N44 237.0 240.1
H43 C43 C42 H42 318.1 54.1
H43 C43 C42 H42A 198.1 293.5
C42 C43 H43 H43A 118.5 120.1
H43 C43 N44 C45 282.0 176.9
N44 C43 H43 H43A 241.5 240.0
H43 C43 N44 HN44 42.0 301.1
C42 C43 H43A N44 123.0 119.8
H43A C43 C42 H42 78.1 174.2
H43A C43 C42 H42A 318.1 53.7
C42 C43 H43A H43 241.5 239.9
H43A C43 N44 C45 162.0 56.8
N44 C43 H43A H43 118.5 120.1
H43A C43 N44 HN44 282.0 181.0
C43 N44 HN44 C45 231.9 235.7
HN44 N44 C43 H43 42.0 301.1
HN44 N44 C43 H43A 282.0 181.0
HN44 N44 C45 C46 190.0 298.8
HN44 N44 C45 H45 310.0 58.9
HN44 N44 C45 H45A 70.0 179.0
N44 C45 H45 C46 239.9 240.0
H45 C45 N44 HN44 310.0 58.9
N44 C45 H45 H45A 120.0 120.1
C46 C45 H45 H45A 240.1 240.1
H45 C45 C46 H46 177.2 66.6
H45 C45 C46 H46A 57.2 306.1
N44 C45 H45A C46 120.1 119.9
H45A C45 N44 HN44 70.0 179.0
N44 C45 H45A H45 240.1 239.9
C46 C45 H45A H45 119.9 120.0
H45A C45 C46 H46 57.2 306.6
H45A C45 C46 H46A 297.2 186.0
N40 C46 H46 C45 243.8 240.7
N40 C46 H46 H46A 121.9 120.4
H46 C46 C45 H45 177.2 66.6
H46 C46 C45 H45A 57.2 306.6
C45 C46 H46 H46A 238.1 239.7
N40 C46 H46A C45 116.2 119.2
N40 C46 H46A H46 238.1 239.6
H46A C46 C45 H45 57.2 306.1
H46A C46 C45 H45A 297.2 186.0
C45 C46 H46A H46 121.9 120.4