PDB Chemical Component S4M

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for S4M

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CA N 1.456 1.438
CA CB 1.516 1.525
CA HA1 1.100 1.094
CA HA2 1.100 1.095
N HN1 1.000 1.008
N HN2 1.000 1.008
CB CG 1.523 1.523
CB HB1 1.100 1.097
CB HB2 1.100 1.097
CG SD 1.821 1.768
CG HG1 1.100 1.094
CG HG2 1.100 1.094
SD CE 1.806 1.768
SD C5' 1.846 1.760
SD HSD 1.300 1.347
CE HE1 1.100 1.091
CE HE2 1.100 1.090
CE HE3 1.100 1.091
C5' C4' 1.535 1.517
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C4' C3' 1.529 1.519
C4' O4' 1.440 1.437
C4' H4' 1.101 1.097
O4' C1' 1.424 1.444
C1' C2' 1.522 1.529
C1' N9 1.494 1.464
C1' H1' 1.100 1.095
C2' O2' 1.419 1.426
C2' C3' 1.540 1.517
C2' H2' 1.100 1.095
O2' HO2' 0.950 0.974
C3' O3' 1.409 1.412
C3' H3' 1.100 1.097
O3' HO3' 0.950 0.969
N9 C4 1.372 1.367
N9 C8 1.367 1.371
C8 N7 1.354 1.316
C8 H8 1.080 1.082
N7 C5 1.350 1.372
C5 C4 1.401 1.385
C5 C6 1.388 1.392
C6 N1 1.387 1.355
C6 N6 1.330 1.405
N6 HN61 1.000 1.002
N6 HN62 1.000 1.003
C4 N3 1.368 1.342
N3 C2 1.370 1.350
C2 N1 1.381 1.355
C2 H2 1.080 1.085

Bond Angles for S4M

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N CA CB 108.5 112.5
N CA HA1 109.8 107.8
N CA HA2 110.1 106.9
CA N HN1 109.5 119.2
CA N HN2 109.4 119.2
CB CA HA1 109.8 111.1
CB CA HA2 110.0 110.0
CA CB CG 111.8 112.4
CA CB HB1 108.7 108.8
CA CB HB2 108.2 110.0
HA1 CA HA2 108.7 108.3
HN1 N HN2 109.5 120.2
CG CB HB1 108.7 109.2
CG CB HB2 108.2 109.6
CB CG SD 114.4 111.3
CB CG HG1 107.9 111.3
CB CG HG2 106.7 111.7
HB1 CB HB2 111.3 106.6
SD CG HG1 107.9 106.9
SD CG HG2 106.8 106.6
CG SD CE 100.6 106.2
CG SD C5' 94.5 105.9
CG SD HSD 121.2 112.5
HG1 CG HG2 113.4 108.8
CE SD C5' 103.0 106.5
CE SD HSD 114.5 112.3
SD CE HE1 109.5 108.4
SD CE HE2 109.5 108.4
SD CE HE3 109.5 108.4
C5' SD HSD 119.3 112.9
SD C5' C4' 116.1 111.2
SD C5' H5'1 107.3 107.5
SD C5' H5'2 105.8 107.6
HE1 CE HE2 109.5 110.5
HE1 CE HE3 109.5 110.5
HE2 CE HE3 109.5 110.5
C4' C5' H5'1 107.3 110.5
C4' C5' H5'2 105.8 110.5
C5' C4' C3' 114.1 113.5
C5' C4' O4' 116.6 109.8
C5' C4' H4' 99.3 108.7
H5'1 C5' H5'2 114.8 109.5
O4' C4' C3' 104.4 105.2
C3' C4' H4' 112.7 111.2
C4' C3' C2' 105.2 102.2
C4' C3' O3' 102.8 112.2
C4' C3' H3' 116.7 110.2
O4' C4' H4' 110.0 108.3
C4' O4' C1' 108.9 108.3
O4' C1' C2' 102.3 107.6
O4' C1' N9 110.7 109.4
O4' C1' H1' 116.4 108.2
C2' C1' N9 117.2 113.7
C2' C1' H1' 109.7 112.6
C1' C2' O2' 108.9 109.3
C1' C2' C3' 102.3 102.9
C1' C2' H2' 116.8 114.0
N9 C1' H1' 101.2 105.2
C1' N9 C4 125.3 126.9
C1' N9 C8 127.2 126.1
O2' C2' C3' 115.9 111.2
O2' C2' H2' 103.5 106.9
C2' O2' HO2' 109.5 107.3
C3' C2' H2' 110.0 112.6
C2' C3' O3' 110.9 113.5
C2' C3' H3' 109.4 109.5
O3' C3' H3' 111.5 109.0
C3' O3' HO3' 109.5 106.4
C8 N9 C4 107.3 107.0
N9 C4 C5 107.3 105.2
N9 C4 N3 132.3 127.5
N9 C8 N7 109.2 112.2
N9 C8 H8 125.4 122.2
N7 C8 H8 125.4 125.6
C8 N7 C5 108.5 104.8
N7 C5 C4 107.7 110.8
N7 C5 C6 133.0 132.4
C6 C5 C4 119.3 116.9
C5 C4 N3 120.5 127.2
C5 C6 N1 118.7 119.1
C5 C6 N6 121.6 120.7
N6 C6 N1 119.7 120.2
C6 N1 C2 121.7 117.5
C6 N6 HN61 109.5 119.5
C6 N6 HN62 109.4 119.4
HN61 N6 HN62 109.5 120.8
C4 N3 C2 120.7 110.5
N3 C2 N1 119.1 128.9
N3 C2 H2 120.5 115.6
N1 C2 H2 120.5 115.5

Torsion Angles for S4M

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CB CA N HA1 240.0 122.8
CB CA N HA2 120.4 239.1
N CA CB CG 80.8 179.0
N CA CB HB1 200.8 57.9
N CA CB HB2 321.8 301.5
HA1 CA N HA2 240.4 116.3
HN1 N CA HN2 240.0 166.5
N CA CB HA1 120.0 239.0
N CA CB HA2 239.6 119.1
CB CA N HN1 29.4 128.8
CB CA N HN2 149.4 322.3
HA1 CA CB HA2 119.6 240.1
CG CB CA HB1 240.0 121.1
CG CB CA HB2 119.0 237.6
CA CB CG SD 254.1 180.9
CA CB CG HG1 134.1 300.0
CA CB CG HG2 12.0 61.9
HB1 CB CA HB2 239.0 116.4
N CA HA1 CB 240.8 123.7
N CA HA1 HA2 120.5 244.6
HA1 CA N HN1 149.4 6.0
HA1 CA N HN2 269.4 199.4
CB CA HA1 HA2 239.6 120.9
HA1 CA CB CG 320.8 300.0
HA1 CA CB HB1 80.8 178.9
HA1 CA CB HB2 201.8 62.4
N CA HA2 CB 119.4 237.5
N CA HA2 HA1 239.7 115.9
HA2 CA N HN1 269.0 249.7
HA2 CA N HN2 29.0 83.2
CB CA HA2 HA1 120.3 238.4
HA2 CA CB CG 201.2 59.9
HA2 CA CB HB1 321.2 298.8
HA2 CA CB HB2 82.2 182.3
HN1 N CA CB 29.4 128.8
HN1 N CA HA1 149.4 6.0
HN1 N CA HA2 269.0 249.7
CA N HN1 HN2 120.0 193.6
HN2 N CA CB 149.4 322.3
HN2 N CA HA1 269.4 199.4
HN2 N CA HA2 29.0 83.2
CA N HN2 HN1 240.0 166.4
CG CB CA HA1 320.8 300.0
CG CB CA HA2 201.2 59.9
CA CB CG HB1 120.0 239.1
CA CB CG HB2 241.0 122.6
HB1 CB CG HB2 121.0 243.5
SD CG CB HG1 120.0 240.9
SD CG CB HG2 242.2 119.0
CB CG SD CE 301.5 181.7
CB CG SD C5' 197.3 68.6
CB CG SD HSD 68.9 304.9
HG1 CG CB HG2 122.2 238.1
HB1 CB CA HA1 80.8 178.9
HB1 CB CA HA2 321.2 298.8
CA CB HB1 CG 238.1 123.1
CA CB HB1 HB2 119.0 241.5
CG CB HB1 HB2 240.9 118.4
HB1 CB CG SD 134.1 301.8
HB1 CB CG HG1 14.2 60.9
HB1 CB CG HG2 252.0 182.7
HB2 CB CA HA1 201.8 62.4
HB2 CB CA HA2 82.2 182.3
CA CB HB2 CG 121.3 235.9
CA CB HB2 HB1 240.6 117.8
CG CB HB2 HB1 119.4 241.9
HB2 CB CG SD 13.1 58.3
HB2 CB CG HG1 253.1 177.4
HB2 CB CG HG2 131.0 299.2
SD CG CB HB1 134.1 301.8
SD CG CB HB2 13.1 58.3
CB CG SD HG1 240.0 121.7
CB CG SD HG2 117.8 238.0
HG1 CG SD HG2 237.8 116.3
CE SD CG C5' 104.2 113.0
CE SD CG HSD 232.6 236.8
CG SD CE HE1 319.3 21.7
CG SD CE HE2 79.4 141.6
CG SD CE HE3 199.3 261.7
C5' SD CG HSD 128.4 123.8
CG SD C5' C4' 177.8 176.6
CG SD C5' H5'1 297.8 297.7
CG SD C5' H5'2 60.8 55.5
HG1 CG CB HB1 14.2 60.9
HG1 CG CB HB2 253.1 177.4
CB CG HG1 SD 124.0 238.3
CB CG HG1 HG2 242.0 123.5
SD CG HG1 HG2 118.0 245.2
HG1 CG SD CE 61.5 60.0
HG1 CG SD C5' 317.3 307.0
HG1 CG SD HSD 188.9 183.2
HG2 CG CB HB1 252.0 182.7
HG2 CG CB HB2 131.0 299.2
CB CG HG2 SD 237.3 121.8
CB CG HG2 HG1 118.6 236.7
SD CG HG2 HG1 241.4 115.0
HG2 CG SD CE 183.6 303.7
HG2 CG SD C5' 79.5 190.7
HG2 CG SD HSD 311.1 66.9
CE SD CG HG1 61.5 60.0
CE SD CG HG2 183.6 303.7
CG SD CE C5' 262.8 247.5
CG SD CE HSD 131.7 123.4
C5' SD CE HSD 228.9 235.9
CE SD C5' C4' 75.8 63.8
CE SD C5' H5'1 195.8 184.9
CE SD C5' H5'2 318.8 302.7
HE1 CE SD HE2 240.0 240.0
HE1 CE SD HE3 120.0 120.0
HE2 CE SD HE3 240.0 240.0
C5' SD CG HG1 317.3 307.0
C5' SD CG HG2 79.5 190.7
CG SD C5' CE 102.0 112.8
CG SD C5' HSD 230.2 236.5
CE SD C5' HSD 128.2 123.7
C5' SD CE HE1 56.6 134.2
C5' SD CE HE2 176.6 254.2
C5' SD CE HE3 296.6 14.2
C4' C5' SD H5'1 240.0 238.9
C4' C5' SD H5'2 117.0 121.1
SD C5' C4' C3' 275.6 179.4
SD C5' C4' O4' 153.6 61.9
SD C5' C4' H4' 35.7 303.7
H5'1 C5' SD H5'2 237.0 242.2
HSD SD CG HG1 188.9 183.2
HSD SD CG HG2 311.1 66.9
CG SD HSD CE 239.1 240.2
CG SD HSD C5' 116.5 119.7
CE SD HSD C5' 237.3 239.5
HSD SD CE HE1 187.6 258.3
HSD SD CE HE2 307.7 18.3
HSD SD CE HE3 67.6 138.3
HSD SD C5' C4' 307.6 300.1
HSD SD C5' H5'1 67.6 61.1
HSD SD C5' H5'2 190.6 178.9
HE1 CE SD C5' 56.6 134.2
HE1 CE SD HSD 187.6 258.3
SD CE HE1 HE2 120.0 118.7
SD CE HE1 HE3 240.0 241.3
HE2 CE HE1 HE3 120.0 122.7
HE2 CE SD C5' 176.6 254.2
HE2 CE SD HSD 307.7 18.3
SD CE HE2 HE1 240.0 241.4
SD CE HE2 HE3 120.0 118.7
HE1 CE HE2 HE3 240.0 237.4
HE3 CE SD C5' 296.6 14.2
HE3 CE SD HSD 67.6 138.3
SD CE HE3 HE1 120.0 118.7
SD CE HE3 HE2 240.0 241.3
HE1 CE HE3 HE2 120.0 122.6
C4' C5' SD HSD 307.6 300.1
SD C5' C4' H5'1 120.0 119.3
SD C5' C4' H5'2 243.0 240.6
H5'1 C5' C4' H5'2 123.0 121.3
O4' C4' C5' C3' 238.0 242.6
C3' C4' C5' H4' 239.9 235.7
C5' C4' C3' C2' 228.8 202.9
C5' C4' C3' O3' 112.6 80.9
C5' C4' C3' H3' 350.3 319.3
O4' C4' C5' H4' 117.9 118.3
C5' C4' O4' C1' 155.0 148.9
H5'1 C5' SD HSD 67.6 61.1
SD C5' H5'1 C4' 234.6 238.5
SD C5' H5'1 H5'2 117.3 116.6
C4' C5' H5'1 H5'2 242.7 238.1
H5'1 C5' C4' C3' 155.6 60.1
H5'1 C5' C4' O4' 33.6 302.6
H5'1 C5' C4' H4' 275.7 184.3
H5'2 C5' SD HSD 190.6 178.9
SD C5' H5'2 C4' 123.7 121.6
SD C5' H5'2 H5'1 241.8 243.5
C4' C5' H5'2 H5'1 118.1 121.9
H5'2 C5' C4' C3' 32.6 298.8
H5'2 C5' C4' O4' 270.6 181.3
H5'2 C5' C4' H4' 152.7 63.0
C3' C4' C5' H5'1 155.6 60.1
C3' C4' C5' H5'2 32.6 298.8
C5' C4' C3' O4' 231.5 239.9
C5' C4' C3' H4' 112.2 122.9
O4' C4' C3' H4' 240.7 243.0
C3' C4' O4' C1' 28.0 26.4
C1' C2' C3' C4' 339.0 32.8
O2' C2' C3' C4' 220.7 275.9
C4' C3' C2' H2' 103.8 156.0
C2' C3' C4' O3' 116.2 121.9
C2' C3' C4' H3' 238.6 243.6
O3' C3' C4' H3' 122.4 121.7
C4' C3' O3' HO3' 184.4 235.8
O4' C4' C5' H5'1 33.6 302.6
O4' C4' C5' H5'2 270.6 181.3
C5' C4' O4' C3' 127.0 122.5
C5' C4' O4' H4' 248.1 241.5
C3' C4' O4' H4' 121.1 119.0
O4' C4' C3' C2' 357.3 323.0
O4' C4' C3' O3' 241.1 201.0
O4' C4' C3' H3' 118.7 79.3
C4' O4' C1' C2' 318.1 355.0
C4' O4' C1' N9 192.5 231.0
C4' O4' C1' H1' 77.7 116.9
H4' C4' C5' H5'1 275.7 184.3
H4' C4' C5' H5'2 152.7 63.0
C5' C4' H4' C3' 238.9 234.4
C5' C4' H4' O4' 122.8 119.3
O4' C4' H4' C3' 116.0 115.1
H4' C4' C3' C2' 116.6 79.9
H4' C4' C3' O3' 0.4 318.0
H4' C4' C3' H3' 238.0 196.3
H4' C4' O4' C1' 266.9 267.4
C1' O4' C4' C3' 28.0 26.4
C1' O4' C4' H4' 266.9 267.4
C2' C1' O4' N9 125.6 124.0
C2' C1' O4' H1' 240.4 238.0
O4' C1' C2' O2' 160.5 100.1
O4' C1' C2' C3' 37.4 341.9
O4' C1' C2' H2' 277.2 219.6
N9 C1' O4' H1' 114.8 114.1
O4' C1' N9 C4 259.0 213.9
O4' C1' N9 C8 74.6 33.9
C4' C3' C2' C1' 339.0 32.8
O4' C1' C2' N9 238.8 238.7
O4' C1' C2' H1' 124.1 119.2
N9 C1' C2' H1' 245.4 240.5
C2' C1' N9 C4 142.3 93.6
C2' C1' N9 C8 317.9 273.6
O2' C2' C1' C3' 123.1 118.2
O2' C2' C1' H2' 243.3 240.5
C1' C2' O2' HO2' 131.6 312.5
C3' C2' C1' H2' 120.1 122.2
C1' C2' C3' O3' 89.5 153.8
C1' C2' C3' H3' 212.9 275.9
O4' C1' N9 C2' 116.7 120.3
O4' C1' N9 H1' 236.0 244.0
C2' C1' N9 H1' 119.3 123.6
N9 C1' C2' O2' 281.7 221.5
N9 C1' C2' C3' 158.6 103.2
N9 C1' C2' H2' 38.5 341.0
C8 N9 C1' C4 175.6 180.0
C1' N9 C4 C5 177.5 180.0
C1' N9 C4 N3 356.3 360.0
C1' N9 C8 N7 181.2 180.0
C1' N9 C8 H8 1.2 360.0
O4' C1' H1' C2' 244.5 241.2
O4' C1' H1' N9 120.0 116.8
C2' C1' H1' N9 235.5 235.7
H1' C1' C2' O2' 36.3 340.9
H1' C1' C2' C3' 273.2 222.7
H1' C1' C2' H2' 153.1 100.5
H1' C1' N9 C4 23.0 330.0
H1' C1' N9 C8 198.6 150.0
C4' C3' C2' O2' 220.7 275.9
O2' C2' C1' N9 281.7 221.5
O2' C2' C1' H1' 36.3 340.9
C1' C2' O2' C3' 245.4 247.1
C1' C2' O2' H2' 125.0 123.8
C3' C2' O2' H2' 239.5 236.7
O2' C2' C3' O3' 331.2 36.9
O2' C2' C3' H3' 94.6 159.0
C2' C3' C4' H4' 116.6 79.9
C4' C3' C2' O3' 249.5 239.0
C4' C3' C2' H3' 126.1 116.9
C3' C2' C1' N9 158.6 103.2
C3' C2' C1' H1' 273.2 222.7
C1' C2' C3' O2' 118.3 116.8
C1' C2' C3' H2' 235.2 236.8
O2' C2' C3' H2' 116.9 120.0
C3' C2' O2' HO2' 246.2 65.4
O3' C3' C2' H3' 236.6 237.9
C2' C3' O3' HO3' 72.4 120.6
H2' C2' C1' N9 38.5 341.0
H2' C2' C1' H1' 153.1 100.5
C1' C2' H2' O2' 240.4 239.2
C1' C2' H2' C3' 116.0 116.7
O2' C2' H2' C3' 235.6 237.5
H2' C2' O2' HO2' 6.6 188.7
H2' C2' C3' O3' 214.3 276.9
H2' C2' C3' H3' 337.7 39.0
HO2' O2' C2' C3' 246.2 65.4
HO2' O2' C2' H2' 6.6 188.7
O3' C3' C4' H4' 0.4 318.0
C4' C3' O3' C2' 112.0 115.2
C4' C3' O3' H3' 234.2 237.6
O3' C3' C2' H2' 214.3 276.9
C2' C3' O3' H3' 122.2 122.4
H3' C3' C4' H4' 238.0 196.3
C4' C3' H3' C2' 240.8 248.3
C4' C3' H3' O3' 117.7 123.5
H3' C3' C2' H2' 337.7 39.0
C2' C3' H3' O3' 236.9 235.3
H3' C3' O3' HO3' 310.2 358.2
HO3' O3' C3' H3' 310.2 358.2
C4 N9 C1' H1' 23.0 330.0
C1' N9 C4 C8 176.3 180.0
C4 N9 C8 N7 357.4 0.0
C4 N9 C8 H8 177.4 180.0
N7 C5 C4 N9 0.6 0.0
C6 C5 C4 N9 178.6 180.0
C5 C4 N9 N3 181.2 180.0
N9 C4 N3 C2 180.7 180.0
C8 N9 C1' H1' 198.6 150.0
C1' N9 C8 C4 183.8 180.0
C8 N9 C4 C5 1.2 360.0
C8 N9 C4 N3 180.0 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 3.0 0.0
N7 C8 N9 C4 357.4 0.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C4 357.8 360.0
C8 N7 C5 C6 180.2 180.0
H8 C8 N9 C4 177.4 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 183.0 180.0
N9 C4 C5 N7 0.6 0.0
C5 N7 C8 H8 183.0 180.0
C6 C5 N7 C4 182.3 180.0
N7 C5 C4 N3 181.6 180.0
N7 C5 C6 N1 177.5 179.9
N7 C5 C6 N6 357.5 359.9
N9 C4 C5 N3 179.0 180.0
N7 C5 C4 C6 182.0 180.0
C4 C5 C6 N1 0.0 360.0
C4 C5 C6 N6 180.0 180.0
C5 C4 N3 C2 359.3 360.0
N9 C4 C5 C6 178.6 180.0
N7 C5 C6 C4 177.5 180.0
C6 C5 C4 N3 359.6 0.0
N6 C6 C5 N1 180.0 180.0
C5 C6 N1 C2 1.3 0.0
C5 C6 N6 HN61 157.6 357.9
C5 C6 N6 HN62 277.6 184.2
N1 C6 C5 C4 0.0 360.0
C5 C6 N1 N6 180.0 180.0
N1 C6 N6 HN61 337.6 177.9
N1 C6 N6 HN62 97.6 4.2
N3 C2 N1 C6 357.7 360.0
C6 N1 C2 H2 177.7 179.9
N6 C6 C5 C4 180.0 180.0
C5 C6 N6 N1 180.0 180.0
N6 C6 N1 C2 181.3 180.0
HN61 N6 C6 HN62 240.0 173.8
HN61 N6 C6 N1 337.6 177.9
C6 N6 HN61 HN62 120.0 186.3
HN62 N6 C6 N1 97.6 4.2
C6 N6 HN62 HN61 240.0 173.7
N9 C4 N3 C5 181.4 180.0
C4 N3 C2 N1 1.9 0.0
C4 N3 C2 H2 182.0 180.1
C6 N1 C2 N3 357.7 360.0
N1 C2 N3 H2 180.0 180.0
N3 C2 N1 H2 180.0 180.0
N3 C2 H2 N1 180.0 180.0