PDB Chemical Component S3A
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for S3A
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O23 |
C21 |
1.248 |
1.207 |
| C21 |
C20 |
1.505 |
1.507 |
| C21 |
O22 |
1.249 |
1.343 |
| O17 |
C16 |
1.252 |
1.209 |
| C20 |
C19 |
1.523 |
1.530 |
| O18 |
C16 |
1.249 |
1.342 |
| C16 |
C15 |
1.503 |
1.507 |
| C19 |
C15 |
1.519 |
1.530 |
| C15 |
C14 |
1.523 |
1.529 |
| C14 |
P11 |
1.813 |
1.824 |
| O25 |
P24 |
1.508 |
1.480 |
| O26 |
P24 |
1.510 |
1.611 |
| P24 |
O12 |
1.611 |
1.611 |
| P24 |
O27 |
1.508 |
1.610 |
| P11 |
O12 |
1.611 |
1.610 |
| P11 |
O13 |
1.483 |
1.480 |
| P11 |
C10 |
1.815 |
1.823 |
| C10 |
C9 |
1.528 |
1.531 |
| C9 |
C1 |
1.529 |
1.530 |
| O4 |
C3 |
1.220 |
1.213 |
| C3 |
N2 |
1.332 |
1.347 |
| C3 |
C5 |
1.501 |
1.507 |
| C1 |
N2 |
1.452 |
1.465 |
| C1 |
C6 |
1.504 |
1.507 |
| C6 |
O7 |
1.252 |
1.208 |
| C6 |
O8 |
1.251 |
1.343 |
| C1 |
H1 |
1.100 |
1.091 |
| C10 |
H2 |
1.100 |
1.090 |
| C10 |
H3 |
1.100 |
1.091 |
| C14 |
H4 |
1.100 |
1.090 |
| C14 |
H5 |
1.100 |
1.090 |
| C15 |
H6 |
1.100 |
1.091 |
| C19 |
H7 |
1.100 |
1.090 |
| C19 |
H8 |
1.101 |
1.090 |
| C20 |
H9 |
1.100 |
1.089 |
| C20 |
H10 |
1.100 |
1.090 |
| C5 |
H11 |
1.100 |
1.089 |
| C5 |
H12 |
1.101 |
1.090 |
| C5 |
H13 |
1.100 |
1.090 |
| C9 |
H14 |
1.100 |
1.089 |
| C9 |
H15 |
1.100 |
1.090 |
| N2 |
H16 |
1.000 |
0.970 |
| O18 |
H17 |
0.950 |
0.968 |
| O22 |
H18 |
0.950 |
0.968 |
| O26 |
H19 |
0.950 |
0.967 |
| O27 |
H20 |
0.950 |
0.967 |
| O8 |
H21 |
0.950 |
0.967 |
Bond Angles for S3A
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C21 |
C20 |
H9 |
110.0 |
109.5 |
| C21 |
C20 |
H10 |
110.1 |
109.5 |
| C21 |
O22 |
H18 |
109.5 |
117.0 |
| C20 |
C19 |
H7 |
109.1 |
109.5 |
| C20 |
C19 |
H8 |
109.1 |
109.4 |
| C16 |
C15 |
H6 |
109.7 |
109.4 |
| C19 |
C15 |
H6 |
109.5 |
109.4 |
| C15 |
C14 |
P11 |
108.1 |
109.5 |
| C15 |
C14 |
H4 |
109.8 |
109.5 |
| C15 |
C14 |
H5 |
109.8 |
109.5 |
| C14 |
P11 |
O12 |
109.3 |
109.5 |
| C14 |
P11 |
O13 |
109.3 |
109.5 |
| P11 |
C14 |
H4 |
109.8 |
109.4 |
| P11 |
C14 |
H5 |
109.8 |
109.5 |
| O25 |
P24 |
O26 |
108.7 |
109.5 |
| O25 |
P24 |
O27 |
110.3 |
109.5 |
| O26 |
P24 |
O27 |
110.6 |
109.5 |
| P24 |
O26 |
H19 |
109.5 |
114.0 |
| P24 |
O27 |
H20 |
109.5 |
114.1 |
| P11 |
C10 |
H2 |
109.7 |
109.5 |
| P11 |
C10 |
H3 |
109.7 |
109.5 |
| C9 |
C10 |
H2 |
109.7 |
109.5 |
| C9 |
C10 |
H3 |
109.7 |
109.5 |
| C10 |
C9 |
H14 |
108.4 |
109.5 |
| C10 |
C9 |
H15 |
108.4 |
109.4 |
| C9 |
C1 |
N2 |
110.0 |
109.5 |
| C9 |
C1 |
H1 |
108.4 |
109.5 |
| C5 |
C3 |
N2 |
115.8 |
120.0 |
| C1 |
N2 |
C3 |
122.4 |
120.0 |
| C3 |
N2 |
H16 |
118.8 |
120.0 |
| C3 |
C5 |
H11 |
109.5 |
109.5 |
| C3 |
C5 |
H12 |
109.4 |
109.5 |
| C3 |
C5 |
H13 |
109.5 |
109.4 |
| C6 |
C1 |
N2 |
111.1 |
109.5 |
| N2 |
C1 |
H1 |
109.4 |
109.5 |
| C1 |
N2 |
H16 |
118.8 |
120.0 |
| C1 |
C6 |
O7 |
118.7 |
120.0 |
| C1 |
C6 |
O8 |
118.9 |
120.0 |
| C6 |
C1 |
H1 |
108.7 |
109.5 |
| O7 |
C6 |
O8 |
122.4 |
120.0 |
| C6 |
O8 |
H21 |
109.5 |
117.0 |
| H2 |
C10 |
H3 |
109.5 |
109.5 |
| H4 |
C14 |
H5 |
109.5 |
109.5 |
| H7 |
C19 |
H8 |
109.5 |
109.5 |
| H9 |
C20 |
H10 |
109.5 |
109.5 |
| H11 |
C5 |
H12 |
109.5 |
109.5 |
| H11 |
C5 |
H13 |
109.5 |
109.5 |
| H12 |
C5 |
H13 |
109.5 |
109.4 |
| H14 |
C9 |
H15 |
109.5 |
109.5 |
Torsion Angles for S3A
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O23 |
C21 |
C20 |
H9 |
230.3 |
240.0 |
| O23 |
C21 |
C20 |
H10 |
350.9 |
120.0 |
| O23 |
C21 |
O22 |
H18 |
0.0 |
360.0 |
| C21 |
C20 |
C19 |
H7 |
294.8 |
60.0 |
| C21 |
C20 |
C19 |
H8 |
54.4 |
300.0 |
| H9 |
C20 |
C21 |
H10 |
239.3 |
120.1 |
| O22 |
C21 |
C20 |
H9 |
52.2 |
60.0 |
| O22 |
C21 |
C20 |
H10 |
172.9 |
299.9 |
| O17 |
C16 |
C15 |
H6 |
20.8 |
207.8 |
| C20 |
C19 |
C15 |
H6 |
306.3 |
305.0 |
| H7 |
C19 |
C20 |
H8 |
240.4 |
120.0 |
| O18 |
C16 |
C15 |
H6 |
200.1 |
27.8 |
| C19 |
C15 |
C16 |
H6 |
240.4 |
240.1 |
| C16 |
C15 |
C14 |
P11 |
225.0 |
286.0 |
| C16 |
C15 |
C14 |
H4 |
344.7 |
45.9 |
| C16 |
C15 |
C14 |
H5 |
105.2 |
165.9 |
| C16 |
C15 |
C19 |
H6 |
119.7 |
119.9 |
| C19 |
C15 |
C14 |
P11 |
105.8 |
166.0 |
| C19 |
C15 |
C14 |
H4 |
225.5 |
285.9 |
| C19 |
C15 |
C14 |
H5 |
346.0 |
45.9 |
| C15 |
C14 |
P11 |
O12 |
52.7 |
174.4 |
| C15 |
C14 |
P11 |
O13 |
295.6 |
54.4 |
| P11 |
C14 |
C15 |
H4 |
240.2 |
240.0 |
| P11 |
C14 |
C15 |
H5 |
119.8 |
120.0 |
| H4 |
C14 |
C15 |
H5 |
239.5 |
240.0 |
| C15 |
C14 |
P11 |
H4 |
119.8 |
120.0 |
| C15 |
C14 |
P11 |
H5 |
240.2 |
240.0 |
| C14 |
P11 |
C10 |
H2 |
305.7 |
55.0 |
| C14 |
P11 |
C10 |
H3 |
66.0 |
295.0 |
| H4 |
C14 |
P11 |
H5 |
120.4 |
120.0 |
| O26 |
P24 |
O25 |
O27 |
238.5 |
120.0 |
| O25 |
P24 |
O26 |
H19 |
360.0 |
300.0 |
| O25 |
P24 |
O27 |
H20 |
0.0 |
184.9 |
| O25 |
P24 |
O26 |
O27 |
121.3 |
239.9 |
| O26 |
P24 |
O27 |
H20 |
120.3 |
64.9 |
| O25 |
P24 |
O27 |
O26 |
239.7 |
120.0 |
| O27 |
P24 |
O26 |
H19 |
238.7 |
60.1 |
| C14 |
P11 |
O12 |
O13 |
241.6 |
240.0 |
| O12 |
P11 |
C14 |
H4 |
292.9 |
54.5 |
| O12 |
P11 |
C14 |
H5 |
172.5 |
294.5 |
| O12 |
P11 |
C10 |
H2 |
67.5 |
175.0 |
| O12 |
P11 |
C10 |
H3 |
187.8 |
55.0 |
| C14 |
P11 |
O13 |
O12 |
118.4 |
120.0 |
| O13 |
P11 |
C14 |
H4 |
175.8 |
294.5 |
| O13 |
P11 |
C14 |
H5 |
55.4 |
174.5 |
| O13 |
P11 |
C10 |
H2 |
185.5 |
295.0 |
| O13 |
P11 |
C10 |
H3 |
305.8 |
175.0 |
| C9 |
C10 |
P11 |
H2 |
240.2 |
120.0 |
| C9 |
C10 |
P11 |
H3 |
119.9 |
240.0 |
| P11 |
C10 |
C9 |
H14 |
307.0 |
60.0 |
| P11 |
C10 |
C9 |
H15 |
65.8 |
300.0 |
| H2 |
C10 |
P11 |
H3 |
239.7 |
120.0 |
| P11 |
C10 |
C9 |
H2 |
119.8 |
239.9 |
| P11 |
C10 |
C9 |
H3 |
240.1 |
120.0 |
| C10 |
C9 |
C1 |
N2 |
65.4 |
65.0 |
| C10 |
C9 |
C1 |
H1 |
305.8 |
305.0 |
| H2 |
C10 |
C9 |
H3 |
120.3 |
240.0 |
| H14 |
C9 |
C10 |
H15 |
241.2 |
120.0 |
| C9 |
C1 |
N2 |
C3 |
243.8 |
205.0 |
| C6 |
C1 |
C9 |
N2 |
122.2 |
120.0 |
| N2 |
C1 |
C9 |
H1 |
119.6 |
120.0 |
| C9 |
C1 |
N2 |
H16 |
63.8 |
24.9 |
| C9 |
C1 |
C6 |
O7 |
285.5 |
240.0 |
| C9 |
C1 |
C6 |
O8 |
105.1 |
60.0 |
| C6 |
C1 |
C9 |
H1 |
241.8 |
240.0 |
| O4 |
C3 |
N2 |
H16 |
183.9 |
180.1 |
| O4 |
C3 |
C5 |
H11 |
0.0 |
270.0 |
| O4 |
C3 |
C5 |
H12 |
120.0 |
30.0 |
| O4 |
C3 |
C5 |
H13 |
240.0 |
150.0 |
| N2 |
C3 |
C5 |
H11 |
180.2 |
89.9 |
| N2 |
C3 |
C5 |
H12 |
300.2 |
210.0 |
| N2 |
C3 |
C5 |
H13 |
60.2 |
329.9 |
| C6 |
C1 |
N2 |
C3 |
122.7 |
85.0 |
| C3 |
N2 |
C1 |
H1 |
2.8 |
325.0 |
| C1 |
N2 |
C3 |
H16 |
180.0 |
179.9 |
| C1 |
N2 |
C3 |
C5 |
183.7 |
180.0 |
| C5 |
C3 |
N2 |
H16 |
3.7 |
0.1 |
| H11 |
C5 |
C3 |
H12 |
240.0 |
239.9 |
| H11 |
C5 |
C3 |
H13 |
120.0 |
120.0 |
| H12 |
C5 |
C3 |
H13 |
240.0 |
240.1 |
| C9 |
C1 |
N2 |
H1 |
241.1 |
240.0 |
| C5 |
C3 |
N2 |
C1 |
183.7 |
180.0 |
| C3 |
N2 |
C1 |
H16 |
180.0 |
180.1 |
| N2 |
C1 |
C6 |
O7 |
47.0 |
0.0 |
| N2 |
C1 |
C6 |
O8 |
226.7 |
180.0 |
| C6 |
C1 |
N2 |
H1 |
120.0 |
120.0 |
| C9 |
C1 |
C6 |
N2 |
238.4 |
240.0 |
| C9 |
C1 |
C6 |
H1 |
118.0 |
120.0 |
| N2 |
C1 |
C6 |
H1 |
239.6 |
240.0 |
| C6 |
C1 |
N2 |
H16 |
302.7 |
264.9 |
| O7 |
C6 |
C1 |
O8 |
180.3 |
180.0 |
| C1 |
C6 |
O8 |
H21 |
180.4 |
180.0 |
| O7 |
C6 |
C1 |
N2 |
47.0 |
0.0 |
| C1 |
C6 |
O7 |
O8 |
179.6 |
180.0 |
| O7 |
C6 |
C1 |
H1 |
167.5 |
120.0 |
| O7 |
C6 |
O8 |
H21 |
0.0 |
360.0 |
| O8 |
C6 |
C1 |
N2 |
226.7 |
180.0 |
| C1 |
C6 |
O8 |
O7 |
180.4 |
180.0 |
| O8 |
C6 |
C1 |
H1 |
347.1 |
300.0 |
| C9 |
C1 |
H1 |
N2 |
120.0 |
120.0 |
| H1 |
C1 |
N2 |
C3 |
2.8 |
325.0 |
| C6 |
C1 |
H1 |
N2 |
238.5 |
240.0 |
| H1 |
C1 |
N2 |
H16 |
182.8 |
144.9 |
| H1 |
C1 |
C6 |
O7 |
167.5 |
120.0 |
| H1 |
C1 |
C6 |
O8 |
347.1 |
300.0 |
| P11 |
C10 |
H2 |
H3 |
120.4 |
240.0 |
| C9 |
C10 |
H2 |
H3 |
239.6 |
120.0 |
| H2 |
C10 |
C9 |
H14 |
187.2 |
180.1 |
| H2 |
C10 |
C9 |
H15 |
305.9 |
60.0 |
| P11 |
C10 |
H3 |
H2 |
239.6 |
120.0 |
| C9 |
C10 |
H3 |
H2 |
120.4 |
240.0 |
| H3 |
C10 |
C9 |
H14 |
66.9 |
300.0 |
| H3 |
C10 |
C9 |
H15 |
185.6 |
180.0 |
| C15 |
C14 |
H4 |
P11 |
241.3 |
240.0 |
| C15 |
C14 |
H4 |
H5 |
120.6 |
120.0 |
| H4 |
C14 |
P11 |
O12 |
292.9 |
54.5 |
| H4 |
C14 |
P11 |
O13 |
175.8 |
294.5 |
| P11 |
C14 |
H4 |
H5 |
239.4 |
240.0 |
| C15 |
C14 |
H5 |
P11 |
118.7 |
120.0 |
| C15 |
C14 |
H5 |
H4 |
239.4 |
240.0 |
| H5 |
C14 |
P11 |
O12 |
172.5 |
294.5 |
| H5 |
C14 |
P11 |
O13 |
55.4 |
174.5 |
| P11 |
C14 |
H5 |
H4 |
120.6 |
120.0 |
| H6 |
C15 |
C14 |
P11 |
346.4 |
46.0 |
| H6 |
C15 |
C14 |
H4 |
106.2 |
165.9 |
| H6 |
C15 |
C14 |
H5 |
226.6 |
285.9 |
| C20 |
C19 |
H7 |
H8 |
119.4 |
240.0 |
| H7 |
C19 |
C15 |
H6 |
186.2 |
65.0 |
| C20 |
C19 |
H8 |
H7 |
240.7 |
120.0 |
| H8 |
C19 |
C15 |
H6 |
66.6 |
185.1 |
| C21 |
C20 |
H9 |
H10 |
121.1 |
240.0 |
| H9 |
C20 |
C19 |
H7 |
175.2 |
180.0 |
| H9 |
C20 |
C19 |
H8 |
294.8 |
60.0 |
| C21 |
C20 |
H10 |
H9 |
239.0 |
120.1 |
| H10 |
C20 |
C19 |
H7 |
54.4 |
300.0 |
| H10 |
C20 |
C19 |
H8 |
174.0 |
180.0 |
| H11 |
C5 |
C3 |
N2 |
180.2 |
89.9 |
| C3 |
C5 |
H11 |
H12 |
120.0 |
120.1 |
| C3 |
C5 |
H11 |
H13 |
240.0 |
240.1 |
| H12 |
C5 |
H11 |
H13 |
120.0 |
120.0 |
| H12 |
C5 |
C3 |
N2 |
300.2 |
210.0 |
| C3 |
C5 |
H12 |
H11 |
240.0 |
239.9 |
| C3 |
C5 |
H12 |
H13 |
120.0 |
119.9 |
| H11 |
C5 |
H12 |
H13 |
240.0 |
240.0 |
| H13 |
C5 |
C3 |
N2 |
60.2 |
329.9 |
| C3 |
C5 |
H13 |
H11 |
120.0 |
120.0 |
| C3 |
C5 |
H13 |
H12 |
240.0 |
240.0 |
| H11 |
C5 |
H13 |
H12 |
120.0 |
120.0 |
| H14 |
C9 |
C10 |
H2 |
187.2 |
180.1 |
| H14 |
C9 |
C10 |
H3 |
66.9 |
300.0 |
| C10 |
C9 |
H14 |
H15 |
118.1 |
240.0 |
| H14 |
C9 |
C1 |
N2 |
304.8 |
185.0 |
| H14 |
C9 |
C1 |
H1 |
185.2 |
65.0 |
| H15 |
C9 |
C10 |
H2 |
305.9 |
60.0 |
| H15 |
C9 |
C10 |
H3 |
185.6 |
180.0 |
| C10 |
C9 |
H15 |
H14 |
241.9 |
120.0 |
| H15 |
C9 |
C1 |
N2 |
186.0 |
305.0 |
| H15 |
C9 |
C1 |
H1 |
66.4 |
185.0 |
| C1 |
N2 |
H16 |
C3 |
180.0 |
180.1 |
| H16 |
N2 |
C1 |
H1 |
182.8 |
144.9 |
| H19 |
O26 |
P24 |
O27 |
238.7 |
60.1 |