Atom Nomenclature for S3A

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for S3A

Atom Name (V3) Atom Name (V2)
C1 C1
C10 C2
C14 C3
C15 C4
C16 C5
C19 C6
C20 C7
C21 C8
C3 C9
C5 C10
C6 C11
C9 C12
N2 N1
O12 O1
O13 O2
O17 O3
O18 O4
O22 O5
O23 O6
O25 O7
O26 O8
O27 O9
O4 O10
O7 O11
O8 O12
P11 P1
P24 P2
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21