Atom Nomenclature for S35

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for S35

Atom Name (V3) Atom Name (V2)
C35 C35
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
C29 C29
C24 C24
C25 C25
C26 C26
O28 O28
O27 O27
N23 N23
C21 C21
O22 O22
C10 C10
N9 N9
C11 C11
C12 C12
O13 O13
C14 C14
C15 C15
C17 C17
C19 C19
C20 C20
C18 C18
O16 O16
N8 N8
C6 C6
C5 C5
C4 C4
C3 C3
C2 C2
C1 C1
F7 F7
H351 H351
H352 H352
H353 H353
H31 H31
H32 H32
H33 H33
H34 H34
H24 H24
H251 H251
H252 H252
H23 H23
H27 H27
H11 H11
H141 H141
H142 H142
H15 H15
H16 H16
H191 H191
H192 H192
H193 H193
H201 H201
H202 H202
H203 H203
H181 H181
H182 H182
H183 H183
H5 H5
H4 H4
H3 H3
H2 H2