PDB Chemical Component S2M

Ideal Model

Chemical Description

Name 2'-O-[2-(METHOXY)ETHYL]-2-THIOTHYMIDINE-5'-MONOPHOSPHATE
Formula C13 H21 N2 O9 P S
Formal charge 0
Molecular weight 412.353 g/mol
Component type RNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 47
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms OP3 HO3'
Bond count 48
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-[2-O-(2-methoxyethyl)-5-O-phosphono-beta-D-ribofuranosyl]-5-methyl-2-thioxo-2,3-dihydropyrimidin-4(1H)-one
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-3-hydroxy-4-(2-methoxyethoxy)-5-(5-methyl-4-oxo-2-sulfanylidene-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) COCCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=C(C)C(=O)NC2=S
SMILES (CACTVS) COCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=C(C)C(=O)NC2=S
Stereo SMILES (OpenEye) CC1=CN(C(=S)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OCCOC
InChI descriptor InChI=1S/C13H21N2O9PS/c1-7-5-15(13(26)14-11(7)17)12-10(22-4-3-21-2)9(16)8(24-12)6-23-25(18,19)20/h5,8-10,12,16H,3-4,6H2,1-2H3,(H,14,17,26)(H2,18,19,20)/t8-,9-,10-,12-/m1/s1
InChIKey descriptor BCVUFQXUUOAMEV-DNRKLUKYSA-N

Status Information

Last modified 2011-06-04
Created 2005-09-16
Release status REL
Model PDB code 2AXB
Processing site RCSB