Atom Nomenclature for S29

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for S29

Atom Name (V3) Atom Name (V2)
C7 C7
S8 S8
C6 C6
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
O13 O13
O14 O14
N9 N9
C10 C10
C33 C33
C11 C11
O15 O15
N12 N12
C16 C16
C17 C17
O18 O18
C21 C21
C22 C22
C23 C23
N19 N19
C20 C20
C24 C24
C31 C31
C29 C29
C28 C28
C26 C26
N30 N30
N32 N32
C27 C27
C25 C25
H7 H7
H7A H7A
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
HN9 HN9
H10 H10
H33 H33
H33A H33A
H33B H33B
H16 H16
H21 H21
H21A H21A
H22 H22
H22A H22A
H23 H23
H23A H23A
HN19 HN19
H20 H20
H20A H20A
H31 H31
H29 H29
HN30 HN30
HN32 HN32
HN3A HN3A
H27 H27
H25 H25