PDB Chemical Component S25
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for S25
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
O |
1.432 |
1.431 |
| C2 |
C3 |
1.519 |
1.531 |
| O |
C1 |
1.432 |
1.429 |
| C1 |
C |
1.517 |
1.532 |
| C3 |
N |
1.463 |
1.470 |
| N |
C |
1.465 |
1.470 |
| N |
C19 |
1.426 |
1.392 |
| C18 |
C19 |
1.386 |
1.391 |
| C18 |
C17 |
1.382 |
1.388 |
| C19 |
C14 |
1.383 |
1.398 |
| N20 |
C17 |
1.403 |
1.392 |
| N20 |
C10 |
1.363 |
1.385 |
| N13 |
C10 |
1.316 |
1.299 |
| N13 |
C12 |
1.368 |
1.317 |
| C17 |
N16 |
1.338 |
1.325 |
| C10 |
S |
1.731 |
1.710 |
| C14 |
C15 |
1.377 |
1.377 |
| C12 |
C11 |
1.381 |
1.349 |
| N16 |
C15 |
1.337 |
1.320 |
| S |
C11 |
1.720 |
1.762 |
| C11 |
C4 |
1.454 |
1.478 |
| C4 |
C9 |
1.381 |
1.397 |
| C4 |
C5 |
1.391 |
1.398 |
| C9 |
N8 |
1.339 |
1.318 |
| C5 |
C6 |
1.390 |
1.396 |
| N8 |
C7 |
1.344 |
1.318 |
| C6 |
C7 |
1.379 |
1.397 |
| C6 |
C21 |
1.477 |
1.479 |
| C21 |
N23 |
1.376 |
1.348 |
| C21 |
O22 |
1.231 |
1.216 |
| N23 |
C24 |
1.448 |
1.465 |
| C24 |
C25 |
1.517 |
1.531 |
| C25 |
N26 |
1.493 |
1.470 |
| C |
H1 |
1.100 |
1.089 |
| C |
H2 |
1.100 |
1.090 |
| C1 |
H3 |
1.100 |
1.089 |
| C1 |
H4 |
1.100 |
1.090 |
| C2 |
H5 |
1.100 |
1.090 |
| C2 |
H6 |
1.100 |
1.090 |
| C3 |
H7 |
1.099 |
1.090 |
| C3 |
H8 |
1.100 |
1.090 |
| C5 |
H9 |
1.080 |
1.080 |
| C7 |
H10 |
1.080 |
1.080 |
| C9 |
H11 |
1.080 |
1.080 |
| C12 |
H12 |
1.080 |
1.080 |
| C14 |
H13 |
1.080 |
1.080 |
| C15 |
H14 |
1.080 |
1.080 |
| C18 |
H15 |
1.080 |
1.080 |
| N20 |
H16 |
1.000 |
0.970 |
| N23 |
H17 |
1.001 |
0.969 |
| C24 |
H18 |
1.100 |
1.089 |
| C24 |
H19 |
1.101 |
1.090 |
| C25 |
H20 |
1.100 |
1.089 |
| C25 |
H21 |
1.100 |
1.090 |
| N26 |
H22 |
1.000 |
1.008 |
| N26 |
H23 |
1.000 |
1.009 |
Bond Angles for S25
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C2 |
H5 |
109.7 |
109.5 |
| C3 |
C2 |
H6 |
109.7 |
109.5 |
| C2 |
C3 |
H7 |
109.7 |
109.5 |
| C2 |
C3 |
H8 |
109.7 |
109.6 |
| O |
C1 |
H3 |
109.6 |
109.6 |
| O |
C1 |
H4 |
109.6 |
109.6 |
| C1 |
C |
H1 |
109.5 |
109.5 |
| C1 |
C |
H2 |
109.5 |
109.5 |
| C3 |
N |
C19 |
116.2 |
111.0 |
| N |
C |
H1 |
109.5 |
109.6 |
| N |
C |
H2 |
109.6 |
109.5 |
| N |
C19 |
C18 |
121.8 |
120.8 |
| N |
C19 |
C14 |
121.4 |
120.8 |
| C19 |
C18 |
H15 |
119.2 |
120.5 |
| C19 |
C14 |
H13 |
120.6 |
120.4 |
| N13 |
C12 |
H12 |
122.0 |
122.8 |
| C10 |
S |
C11 |
90.0 |
90.4 |
| C15 |
C14 |
H13 |
120.7 |
120.4 |
| C14 |
C15 |
H14 |
117.8 |
119.5 |
| N16 |
C15 |
H14 |
117.8 |
119.5 |
| S |
C11 |
C4 |
122.2 |
126.0 |
| C5 |
C4 |
C9 |
118.6 |
119.0 |
| C4 |
C9 |
N8 |
125.3 |
120.9 |
| C4 |
C9 |
H11 |
117.4 |
119.5 |
| C4 |
C5 |
C6 |
117.6 |
118.2 |
| C4 |
C5 |
H9 |
121.2 |
120.9 |
| C5 |
C6 |
C7 |
118.7 |
119.1 |
| C5 |
C6 |
C21 |
124.1 |
120.5 |
| C6 |
C5 |
H9 |
121.2 |
121.0 |
| N8 |
C7 |
H10 |
117.4 |
119.5 |
| C7 |
C6 |
C21 |
117.1 |
120.4 |
| C6 |
C7 |
H10 |
117.4 |
119.6 |
| C6 |
C21 |
N23 |
116.2 |
120.0 |
| C6 |
C21 |
O22 |
118.4 |
120.0 |
| O22 |
C21 |
N23 |
125.4 |
120.0 |
| C21 |
N23 |
C24 |
120.8 |
119.9 |
| C21 |
N23 |
H17 |
119.6 |
120.0 |
| N23 |
C24 |
C25 |
112.1 |
109.4 |
| C24 |
N23 |
H17 |
119.6 |
120.0 |
| N23 |
C24 |
H18 |
108.6 |
109.5 |
| N23 |
C24 |
H19 |
108.6 |
109.5 |
| C24 |
C25 |
N26 |
110.2 |
109.4 |
| C25 |
C24 |
H18 |
108.6 |
109.5 |
| C25 |
C24 |
H19 |
108.6 |
109.5 |
| C24 |
C25 |
H20 |
109.2 |
109.5 |
| C24 |
C25 |
H21 |
109.2 |
109.5 |
| N26 |
C25 |
H20 |
109.2 |
109.5 |
| N26 |
C25 |
H21 |
109.2 |
109.5 |
| C25 |
N26 |
H22 |
109.5 |
111.0 |
| C25 |
N26 |
H23 |
109.4 |
111.0 |
| H1 |
C |
H2 |
109.4 |
109.5 |
| H3 |
C1 |
H4 |
109.3 |
109.5 |
| H5 |
C2 |
H6 |
109.2 |
109.5 |
| H7 |
C3 |
H8 |
109.2 |
109.5 |
| H18 |
C24 |
H19 |
110.3 |
109.5 |
| H20 |
C25 |
H21 |
109.7 |
109.5 |
| H22 |
N26 |
H23 |
109.5 |
111.1 |
Torsion Angles for S25
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
O |
C1 |
H3 |
54.1 |
298.7 |
| C2 |
O |
C1 |
H4 |
174.1 |
178.6 |
| C2 |
C3 |
N |
C19 |
260.3 |
177.6 |
| H5 |
C2 |
C3 |
H6 |
120.0 |
120.0 |
| H7 |
C3 |
C2 |
H8 |
240.0 |
120.1 |
| O |
C1 |
C |
H1 |
171.9 |
183.2 |
| O |
C1 |
C |
H2 |
291.9 |
63.1 |
| H3 |
C1 |
O |
H4 |
240.0 |
120.2 |
| N |
C |
C1 |
H1 |
240.0 |
120.1 |
| N |
C |
C1 |
H2 |
120.0 |
240.1 |
| H1 |
C |
C1 |
H2 |
240.0 |
120.1 |
| C3 |
N |
C |
H1 |
194.3 |
178.5 |
| C3 |
N |
C |
H2 |
74.4 |
298.7 |
| C3 |
N |
C19 |
C18 |
334.5 |
303.7 |
| C3 |
N |
C19 |
C14 |
157.8 |
123.2 |
| C1 |
C |
N |
H1 |
120.0 |
240.0 |
| C1 |
C |
N |
H2 |
240.0 |
119.9 |
| H1 |
C |
N |
H2 |
120.0 |
239.9 |
| C19 |
N |
C |
H1 |
340.5 |
302.4 |
| C19 |
N |
C |
H2 |
220.5 |
62.5 |
| N |
C19 |
C18 |
H15 |
2.1 |
359.5 |
| N |
C19 |
C14 |
H13 |
357.1 |
0.3 |
| N |
C19 |
C18 |
C14 |
183.1 |
179.5 |
| C18 |
C19 |
C14 |
H13 |
180.1 |
179.8 |
| N |
C19 |
C18 |
C17 |
182.0 |
180.0 |
| N |
C19 |
C14 |
C18 |
176.9 |
180.5 |
| C15 |
C14 |
C19 |
H13 |
180.0 |
179.7 |
| C19 |
C14 |
C15 |
H14 |
179.9 |
180.2 |
| C17 |
N16 |
C15 |
H14 |
181.0 |
180.1 |
| C10 |
S |
C11 |
C4 |
188.0 |
180.0 |
| N |
C19 |
C14 |
C15 |
177.0 |
180.0 |
| C19 |
C14 |
C15 |
H13 |
180.0 |
180.3 |
| N16 |
C15 |
C14 |
H14 |
180.0 |
180.0 |
| N16 |
C15 |
C14 |
H13 |
179.9 |
179.9 |
| C14 |
C15 |
N16 |
H14 |
180.0 |
180.0 |
| C11 |
C4 |
C9 |
H11 |
4.0 |
0.3 |
| C11 |
C4 |
C5 |
H9 |
354.0 |
359.8 |
| S |
C11 |
C4 |
C9 |
165.9 |
180.0 |
| C9 |
C4 |
C5 |
C6 |
0.2 |
360.0 |
| C9 |
C4 |
C5 |
H9 |
180.2 |
180.0 |
| S |
C11 |
C4 |
C5 |
352.0 |
0.2 |
| C5 |
C4 |
C9 |
N8 |
358.2 |
360.0 |
| C5 |
C4 |
C9 |
H11 |
178.1 |
180.0 |
| C4 |
C5 |
C6 |
C7 |
0.5 |
0.0 |
| C4 |
C5 |
C6 |
C21 |
180.2 |
180.0 |
| C6 |
C5 |
C4 |
H9 |
180.0 |
180.0 |
| C4 |
C9 |
N8 |
H11 |
180.0 |
180.1 |
| C9 |
N8 |
C7 |
H10 |
178.1 |
179.9 |
| C6 |
C5 |
C4 |
C9 |
0.2 |
360.0 |
| C4 |
C5 |
C6 |
H9 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
C21 |
180.3 |
180.0 |
| C5 |
C6 |
C7 |
H10 |
180.4 |
180.0 |
| C5 |
C6 |
C21 |
N23 |
7.2 |
180.0 |
| C5 |
C6 |
C21 |
O22 |
185.1 |
360.0 |
| C4 |
C9 |
N8 |
C7 |
2.6 |
0.1 |
| N8 |
C7 |
C6 |
C21 |
180.7 |
180.0 |
| C6 |
C7 |
N8 |
H10 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
C21 |
179.7 |
180.0 |
| C7 |
C6 |
C5 |
H9 |
180.5 |
180.0 |
| N8 |
C7 |
C6 |
H10 |
180.0 |
180.0 |
| C7 |
C6 |
C21 |
N23 |
187.0 |
360.0 |
| C7 |
C6 |
C21 |
O22 |
4.8 |
180.0 |
| C5 |
C6 |
C21 |
C7 |
180.3 |
180.0 |
| C21 |
C6 |
C5 |
H9 |
0.2 |
360.0 |
| C21 |
C6 |
C7 |
H10 |
0.7 |
0.1 |
| O22 |
C21 |
C6 |
N23 |
177.9 |
180.0 |
| C6 |
C21 |
N23 |
C24 |
179.2 |
180.0 |
| C6 |
C21 |
N23 |
H17 |
359.2 |
360.0 |
| C6 |
C21 |
N23 |
O22 |
177.7 |
180.0 |
| C21 |
N23 |
C24 |
C25 |
238.8 |
180.0 |
| C24 |
N23 |
C21 |
H17 |
180.0 |
180.0 |
| C21 |
N23 |
C24 |
H18 |
358.8 |
300.0 |
| C21 |
N23 |
C24 |
H19 |
118.8 |
60.0 |
| C6 |
C21 |
O22 |
N23 |
182.4 |
180.0 |
| O22 |
C21 |
N23 |
C24 |
1.5 |
0.0 |
| O22 |
C21 |
N23 |
H17 |
181.5 |
180.0 |
| C21 |
N23 |
C24 |
H17 |
180.0 |
180.0 |
| N23 |
C24 |
C25 |
N26 |
48.5 |
180.0 |
| C25 |
C24 |
N23 |
H18 |
240.0 |
240.0 |
| C25 |
C24 |
N23 |
H19 |
120.0 |
120.0 |
| N23 |
C24 |
C25 |
H20 |
168.5 |
300.0 |
| N23 |
C24 |
C25 |
H21 |
288.5 |
60.0 |
| H18 |
C24 |
N23 |
H19 |
240.0 |
240.0 |
| C25 |
C24 |
N23 |
H17 |
58.8 |
0.0 |
| N23 |
C24 |
C25 |
H18 |
120.0 |
120.0 |
| N23 |
C24 |
C25 |
H19 |
240.0 |
240.0 |
| N26 |
C25 |
C24 |
H20 |
240.0 |
240.0 |
| N26 |
C25 |
C24 |
H21 |
120.0 |
120.0 |
| C24 |
C25 |
N26 |
H22 |
180.0 |
56.0 |
| C24 |
C25 |
N26 |
H23 |
300.0 |
180.1 |
| H18 |
C24 |
C25 |
H19 |
120.0 |
120.0 |
| H20 |
C25 |
C24 |
H21 |
240.0 |
240.0 |
| N26 |
C25 |
C24 |
H18 |
288.6 |
60.0 |
| N26 |
C25 |
C24 |
H19 |
168.5 |
300.0 |
| C24 |
C25 |
N26 |
H20 |
120.0 |
120.0 |
| C24 |
C25 |
N26 |
H21 |
240.0 |
240.0 |
| H20 |
C25 |
N26 |
H21 |
120.0 |
120.0 |
| H22 |
N26 |
C25 |
H23 |
240.0 |
236.0 |
| C1 |
C |
H1 |
H2 |
120.1 |
240.0 |
| N |
C |
H1 |
H2 |
239.9 |
120.1 |
| C1 |
C |
H2 |
H1 |
240.0 |
120.1 |
| N |
C |
H2 |
H1 |
120.1 |
239.8 |
| O |
C1 |
H3 |
H4 |
120.2 |
239.8 |
| H3 |
C1 |
C |
H1 |
52.0 |
303.1 |
| H3 |
C1 |
C |
H2 |
171.9 |
183.1 |
| O |
C1 |
H4 |
H3 |
239.8 |
120.2 |
| H4 |
C1 |
C |
H1 |
291.9 |
63.2 |
| H4 |
C1 |
C |
H2 |
51.9 |
303.1 |
| C3 |
C2 |
H5 |
H6 |
239.7 |
240.0 |
| H5 |
C2 |
C3 |
H7 |
306.5 |
176.9 |
| H5 |
C2 |
C3 |
H8 |
66.5 |
56.8 |
| C3 |
C2 |
H6 |
H5 |
120.3 |
120.0 |
| H6 |
C2 |
C3 |
H7 |
186.5 |
56.9 |
| H6 |
C2 |
C3 |
H8 |
306.5 |
296.7 |
| H7 |
C3 |
C2 |
H5 |
306.5 |
176.9 |
| H7 |
C3 |
C2 |
H6 |
186.5 |
56.9 |
| C2 |
C3 |
H7 |
H8 |
120.3 |
239.9 |
| H7 |
C3 |
N |
C19 |
140.3 |
297.5 |
| H8 |
C3 |
C2 |
H5 |
66.5 |
56.8 |
| H8 |
C3 |
C2 |
H6 |
306.5 |
296.7 |
| C2 |
C3 |
H8 |
H7 |
239.7 |
120.1 |
| H8 |
C3 |
N |
C19 |
20.3 |
57.6 |
| H9 |
C5 |
C4 |
C9 |
180.2 |
180.0 |
| C4 |
C5 |
H9 |
C6 |
180.0 |
180.0 |
| H9 |
C5 |
C6 |
C7 |
180.5 |
180.0 |
| H9 |
C5 |
C6 |
C21 |
0.2 |
360.0 |
| H10 |
C7 |
C6 |
C21 |
0.7 |
0.1 |
| C4 |
C9 |
H11 |
N8 |
180.0 |
180.0 |
| H13 |
C14 |
C15 |
H14 |
359.9 |
359.9 |
| H14 |
C15 |
C14 |
H13 |
359.9 |
359.9 |
| C21 |
N23 |
H17 |
C24 |
180.0 |
180.0 |
| H17 |
N23 |
C24 |
C25 |
58.8 |
0.0 |
| H17 |
N23 |
C24 |
H18 |
178.8 |
120.0 |
| H17 |
N23 |
C24 |
H19 |
298.8 |
240.0 |
| N23 |
C24 |
H18 |
C25 |
237.8 |
240.1 |
| H18 |
C24 |
N23 |
H17 |
178.8 |
120.0 |
| N23 |
C24 |
H18 |
H19 |
118.9 |
120.0 |
| H18 |
C24 |
C25 |
N26 |
288.6 |
60.0 |
| C25 |
C24 |
H18 |
H19 |
241.1 |
240.0 |
| H18 |
C24 |
C25 |
H20 |
48.5 |
180.0 |
| H18 |
C24 |
C25 |
H21 |
168.5 |
300.0 |
| N23 |
C24 |
H19 |
C25 |
122.2 |
120.0 |
| H19 |
C24 |
N23 |
H17 |
298.8 |
240.0 |
| N23 |
C24 |
H19 |
H18 |
241.1 |
240.0 |
| H19 |
C24 |
C25 |
N26 |
168.5 |
300.0 |
| C25 |
C24 |
H19 |
H18 |
118.9 |
120.0 |
| H19 |
C24 |
C25 |
H20 |
288.5 |
60.0 |
| H19 |
C24 |
C25 |
H21 |
48.5 |
180.0 |
| C24 |
C25 |
H20 |
N26 |
239.4 |
240.1 |
| H20 |
C25 |
C24 |
H18 |
48.5 |
180.0 |
| H20 |
C25 |
C24 |
H19 |
288.5 |
60.0 |
| C24 |
C25 |
H20 |
H21 |
119.7 |
120.0 |
| N26 |
C25 |
H20 |
H21 |
240.3 |
240.0 |
| H20 |
C25 |
N26 |
H22 |
60.0 |
296.1 |
| H20 |
C25 |
N26 |
H23 |
180.0 |
60.1 |
| C24 |
C25 |
H21 |
N26 |
120.6 |
120.0 |
| H21 |
C25 |
C24 |
H18 |
168.5 |
300.0 |
| H21 |
C25 |
C24 |
H19 |
48.5 |
180.0 |
| C24 |
C25 |
H21 |
H20 |
240.3 |
240.0 |
| N26 |
C25 |
H21 |
H20 |
119.7 |
120.0 |
| H21 |
C25 |
N26 |
H22 |
300.0 |
176.0 |
| H21 |
C25 |
N26 |
H23 |
60.0 |
300.1 |
| H22 |
N26 |
C25 |
H20 |
60.0 |
296.1 |
| H22 |
N26 |
C25 |
H21 |
300.0 |
176.0 |
| C25 |
N26 |
H22 |
H23 |
120.0 |
124.0 |
| H23 |
N26 |
C25 |
H20 |
180.0 |
60.1 |
| H23 |
N26 |
C25 |
H21 |
60.0 |
300.1 |
| C25 |
N26 |
H23 |
H22 |
240.0 |
236.0 |