Atom Nomenclature for S0W

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for S0W

Atom Name (V3) Atom Name (V2)
O1 O1
C2 C2
O3 O3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
CL1 CL1
C11 C11
C12 C12
H1 H1
H41C H41C
H42C H42C
H51C H51C
H52C H52C
H7 H7
H12 H12
H8 H8
H11 H11