Atom Nomenclature for S00

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for S00

Atom Name (V3) Atom Name (V2)
C7 C7
S8 S8
C4 C4
C5 C5
C6 C6
C1 C1
C2 C2
C3 C3
O12 O12
O13 O13
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
N9 N9
C10 C10
C14 C14
C11 C11
O31 O31
N21 N21
C22 C22
C26 C26
O30 O30
C23 C23
C24 C24
C25 C25
N27 N27
C28 C28
C29 C29
C33 C33
C34 C34
C35 C35
C37 C37
N38 N38
N39 N39
C36 C36
C32 C32
H7 H7
H7A H7A
H5 H5
H6 H6
H1 H1
H2 H2
H3 H3
H15 H15
H16 H16
H16A H16A
H17 H17
H17A H17A
H18 H18
H18A H18A
H19 H19
H19A H19A
H20 H20
H20A H20A
HN9 HN9
H10 H10
H14 H14
H14A H14A
H22 H22
H23 H23
H23A H23A
H24 H24
H24A H24A
H25 H25
H25A H25A
HN27 HN27
H28 H28
H28A H28A
H33 H33
H34 H34
HN38 HN38
HN39 HN39
HN3A HN3A
H36 H36
H32 H32