PDB Chemical Component RZ7
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RZ7
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C4 |
S |
1.688 |
1.762 |
| N3S |
S |
1.588 |
1.656 |
| O1S |
S |
1.431 |
1.421 |
| S |
O2S |
1.467 |
1.421 |
| C1' |
N' |
1.467 |
1.465 |
| N' |
C7 |
1.325 |
1.348 |
| N' |
HN' |
1.000 |
0.971 |
| O' |
C7 |
1.256 |
1.216 |
| C7 |
C1 |
1.478 |
1.478 |
| C1 |
C5 |
1.416 |
1.395 |
| C1 |
C3 |
1.392 |
1.396 |
| C3 |
C2 |
1.415 |
1.379 |
| C2 |
C4 |
1.424 |
1.383 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
H3 |
1.080 |
1.080 |
| C6 |
C4 |
1.408 |
1.384 |
| C5 |
C6 |
1.395 |
1.379 |
| C5 |
H5 |
1.080 |
1.081 |
| C6 |
H6 |
1.080 |
1.080 |
| C2' |
F2'1 |
1.330 |
1.399 |
| F3'1 |
C3' |
1.365 |
1.399 |
| C4' |
F4'1 |
1.396 |
1.399 |
| F5'1 |
C5' |
1.355 |
1.399 |
| C6' |
F6'1 |
1.366 |
1.399 |
| C2' |
F2'2 |
1.301 |
1.399 |
| F3'2 |
C3' |
1.361 |
1.399 |
| C4' |
F4'2 |
1.344 |
1.399 |
| C5' |
F5'2 |
1.376 |
1.399 |
| C6' |
F6'2 |
1.341 |
1.399 |
| F6'3 |
C6' |
1.320 |
1.399 |
| C1' |
C2' |
1.523 |
1.530 |
| C1' |
H1' |
1.100 |
1.090 |
| C1' |
H1'A |
1.099 |
1.089 |
| C3' |
C2' |
1.520 |
1.530 |
| C3' |
C4' |
1.582 |
1.530 |
| N3S |
HN3S |
1.000 |
0.970 |
| N3S |
HN3A |
1.000 |
0.970 |
| C5' |
C4' |
1.481 |
1.530 |
| C5' |
C6' |
1.562 |
1.530 |
Bond Angles for RZ7
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
S |
O2S |
106.8 |
106.4 |
| O1S |
S |
O2S |
116.2 |
123.1 |
| C1' |
N' |
HN' |
120.2 |
120.0 |
| C7 |
N' |
HN' |
120.2 |
120.0 |
| N' |
C7 |
O' |
121.2 |
120.0 |
| N' |
C7 |
C1 |
118.0 |
120.1 |
| O' |
C7 |
C1 |
120.8 |
120.0 |
| C3 |
C1 |
C5 |
119.9 |
119.7 |
| C1 |
C5 |
C6 |
118.4 |
119.9 |
| C1 |
C5 |
H5 |
120.8 |
120.1 |
| C1 |
C3 |
C2 |
120.5 |
119.9 |
| C1 |
C3 |
H3 |
119.8 |
120.1 |
| C3 |
C2 |
C4 |
121.0 |
120.1 |
| C3 |
C2 |
H2 |
119.5 |
120.0 |
| C4 |
C2 |
H2 |
119.5 |
119.9 |
| C6 |
C5 |
H5 |
120.8 |
120.0 |
| C5 |
C6 |
H6 |
118.1 |
120.0 |
| F3'1 |
C3' |
F3'2 |
103.7 |
109.5 |
| F3'1 |
C3' |
C2' |
109.6 |
109.5 |
| F3'1 |
C3' |
C4' |
111.3 |
109.5 |
| F5'1 |
C5' |
F5'2 |
123.0 |
109.5 |
| F5'1 |
C5' |
C4' |
101.7 |
109.5 |
| F5'1 |
C5' |
C6' |
112.3 |
109.5 |
| F3'2 |
C3' |
C2' |
109.2 |
109.5 |
| F3'2 |
C3' |
C4' |
117.5 |
109.5 |
| F6'3 |
C6' |
C5' |
105.3 |
109.5 |
| C2' |
C1' |
H1' |
109.8 |
109.5 |
| C2' |
C1' |
H1'A |
109.8 |
109.5 |
| H1' |
C1' |
H1'A |
109.1 |
109.5 |
| HN3S |
N3S |
HN3A |
109.5 |
120.0 |
Torsion Angles for RZ7
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1S |
S |
C4 |
O2S |
126.2 |
227.1 |
| C4 |
S |
O1S |
O2S |
239.4 |
122.9 |
| C7 |
N' |
C1' |
HN' |
180.0 |
180.0 |
| C1' |
N' |
C7 |
HN' |
180.0 |
180.0 |
| O' |
C7 |
N' |
C1 |
177.8 |
180.0 |
| HN' |
N' |
C7 |
O' |
177.0 |
180.0 |
| HN' |
N' |
C7 |
C1 |
359.3 |
0.0 |
| O' |
C7 |
N' |
HN' |
177.0 |
180.0 |
| N' |
C7 |
O' |
C1 |
182.3 |
180.0 |
| C1 |
C7 |
N' |
HN' |
359.3 |
0.0 |
| N' |
C7 |
C1 |
O' |
177.8 |
180.0 |
| C7 |
C1 |
C5 |
H5 |
359.9 |
0.2 |
| C7 |
C1 |
C3 |
H3 |
360.0 |
359.8 |
| N' |
C7 |
C1 |
C5 |
190.6 |
180.0 |
| O' |
C7 |
C1 |
C5 |
12.8 |
0.1 |
| C5 |
C1 |
C3 |
C2 |
356.5 |
359.9 |
| C5 |
C1 |
C3 |
H3 |
176.5 |
180.0 |
| C6 |
C5 |
C1 |
H5 |
180.0 |
180.1 |
| C1 |
C5 |
C6 |
H6 |
176.1 |
180.0 |
| N' |
C7 |
C1 |
C3 |
7.1 |
0.2 |
| O' |
C7 |
C1 |
C3 |
189.3 |
180.2 |
| C3 |
C1 |
C5 |
C6 |
3.4 |
0.1 |
| C3 |
C1 |
C5 |
H5 |
183.4 |
180.0 |
| C1 |
C3 |
C2 |
C4 |
3.9 |
0.1 |
| C1 |
C3 |
C2 |
H2 |
183.9 |
180.0 |
| C2 |
C3 |
C1 |
C5 |
356.5 |
359.9 |
| C1 |
C3 |
C2 |
H3 |
180.0 |
180.1 |
| C4 |
C2 |
C3 |
H2 |
180.0 |
180.1 |
| C2 |
C4 |
S |
O2S |
61.5 |
336.4 |
| C3 |
C2 |
C4 |
H2 |
180.0 |
179.9 |
| C3 |
C2 |
H2 |
C4 |
180.0 |
180.1 |
| H3 |
C3 |
C1 |
C5 |
176.5 |
180.0 |
| C1 |
C3 |
H3 |
C2 |
180.0 |
179.9 |
| H3 |
C3 |
C2 |
C4 |
183.9 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
3.9 |
359.9 |
| C6 |
C4 |
S |
O2S |
244.2 |
156.4 |
| C1 |
C5 |
C6 |
C4 |
356.1 |
359.9 |
| C6 |
C4 |
C2 |
H2 |
175.9 |
180.0 |
| C1 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
| C1 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
| H5 |
C5 |
C6 |
H6 |
356.1 |
0.1 |
| H6 |
C6 |
C5 |
H5 |
356.1 |
0.1 |
| F3'2 |
C3' |
F3'1 |
C2' |
116.5 |
240.0 |
| F3'2 |
C3' |
F3'1 |
C4' |
232.7 |
120.0 |
| F3'1 |
C3' |
C4' |
F4'1 |
145.7 |
180.0 |
| F6'3 |
C6' |
C5' |
F5'1 |
316.9 |
60.0 |
| F5'1 |
C5' |
C6' |
F6'1 |
199.7 |
300.0 |
| F3'1 |
C3' |
C2' |
F2'2 |
288.0 |
60.0 |
| F3'1 |
C3' |
F3'2 |
C2' |
243.2 |
120.0 |
| F3'1 |
C3' |
F3'2 |
C4' |
123.3 |
240.0 |
| F3'1 |
C3' |
C4' |
F4'2 |
12.1 |
300.0 |
| F5'1 |
C5' |
C4' |
F4'2 |
307.7 |
60.0 |
| F3'2 |
C3' |
C4' |
F4'2 |
131.5 |
180.0 |
| F5'1 |
C5' |
F5'2 |
C4' |
252.8 |
120.0 |
| F5'1 |
C5' |
F5'2 |
C6' |
134.0 |
240.0 |
| F5'1 |
C5' |
C6' |
F6'2 |
73.2 |
180.0 |
| F5'1 |
C5' |
C6' |
F6'3 |
316.9 |
60.0 |
| C2' |
C1' |
N' |
HN' |
275.2 |
0.0 |
| F3'1 |
C3' |
C2' |
C1' |
49.0 |
300.0 |
| F3'2 |
C3' |
C2' |
C1' |
296.0 |
60.0 |
| H1' |
C1' |
C2' |
H1'A |
120.0 |
120.0 |
| H1' |
C1' |
N' |
HN' |
35.3 |
120.0 |
| C2' |
C1' |
H1' |
H1'A |
239.6 |
240.0 |
| H1'A |
C1' |
N' |
HN' |
155.2 |
240.0 |
| C2' |
C1' |
H1'A |
H1' |
120.4 |
120.0 |
| F3'1 |
C3' |
C2' |
F3'2 |
113.0 |
240.0 |
| F3'1 |
C3' |
C2' |
C4' |
240.1 |
120.0 |
| F3'2 |
C3' |
C2' |
C4' |
127.1 |
240.0 |
| C3' |
C2' |
C1' |
H1' |
68.1 |
60.0 |
| C3' |
C2' |
C1' |
H1'A |
308.2 |
300.0 |
| F3'1 |
C3' |
C4' |
F3'2 |
240.6 |
120.0 |
| F3'1 |
C3' |
C4' |
C2' |
118.7 |
240.0 |
| F5'1 |
C5' |
C4' |
C3' |
62.5 |
300.0 |
| F3'2 |
C3' |
C4' |
C2' |
238.1 |
120.0 |
| F5'1 |
C5' |
C4' |
F5'2 |
125.0 |
240.0 |
| F5'1 |
C5' |
C4' |
C6' |
238.1 |
120.0 |
| F6'3 |
C6' |
C5' |
C4' |
200.9 |
180.0 |
| F5'1 |
C5' |
C6' |
F5'2 |
220.7 |
120.0 |
| F5'1 |
C5' |
C6' |
C4' |
116.0 |
240.0 |