PDB Chemical Component RZ0
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RZ0
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| S |
O2S |
1.435 |
1.421 |
| N' |
C7 |
1.276 |
1.347 |
| N' |
HN' |
0.999 |
0.970 |
| O' |
C7 |
1.225 |
1.216 |
| C1 |
C5 |
1.394 |
1.396 |
| C1 |
C3 |
1.393 |
1.395 |
| C2 |
C4 |
1.398 |
1.384 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
C2 |
1.414 |
1.379 |
| C3 |
H3 |
1.080 |
1.080 |
| C4 |
S |
1.660 |
1.761 |
| C5 |
C6 |
1.402 |
1.379 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
C4 |
1.399 |
1.384 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
C1 |
1.508 |
1.478 |
| C1' |
N' |
1.382 |
1.466 |
| C1' |
H1' |
1.100 |
1.090 |
| C1' |
H1'A |
1.101 |
1.090 |
| O1S |
S |
1.448 |
1.421 |
| C2' |
C1' |
1.525 |
1.530 |
| C2' |
C3' |
1.562 |
1.530 |
| C2' |
H2' |
1.100 |
1.090 |
| C2' |
H2'A |
1.099 |
1.090 |
| C3' |
C4' |
1.532 |
1.530 |
| N3S |
S |
1.558 |
1.657 |
| N3S |
HN3S |
1.000 |
0.970 |
| N3S |
HN3A |
1.000 |
0.970 |
| C4' |
H4' |
1.100 |
1.089 |
| C4' |
H4'A |
1.100 |
1.090 |
| C4' |
H14 |
1.100 |
1.090 |
| C3' |
H3' |
1.100 |
1.090 |
| C3' |
H16 |
1.100 |
1.090 |
Bond Angles for RZ0
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
S |
O2S |
110.3 |
106.4 |
| O1S |
S |
O2S |
115.7 |
123.2 |
| C7 |
N' |
HN' |
101.7 |
120.0 |
| N' |
C7 |
O' |
103.6 |
120.0 |
| N' |
C7 |
C1 |
131.2 |
120.0 |
| C1' |
N' |
HN' |
101.7 |
119.9 |
| O' |
C7 |
C1 |
124.1 |
120.0 |
| C3 |
C1 |
C5 |
122.4 |
119.7 |
| C1 |
C5 |
C6 |
119.3 |
119.9 |
| C1 |
C5 |
H5 |
120.4 |
120.1 |
| C1 |
C3 |
C2 |
117.1 |
119.9 |
| C1 |
C3 |
H3 |
121.5 |
120.0 |
| C4 |
C2 |
H2 |
119.1 |
119.9 |
| C3 |
C2 |
C4 |
121.8 |
120.2 |
| C3 |
C2 |
H2 |
119.1 |
120.0 |
| C6 |
C5 |
H5 |
120.3 |
120.0 |
| C5 |
C6 |
H6 |
119.9 |
120.0 |
| H1' |
C1' |
H1'A |
103.6 |
109.4 |
| C2' |
C1' |
H1' |
114.9 |
109.5 |
| C2' |
C1' |
H1'A |
114.8 |
109.5 |
| C3' |
C2' |
H2' |
108.5 |
109.4 |
| C3' |
C2' |
H2'A |
108.5 |
109.4 |
| C2' |
C3' |
C4' |
115.1 |
109.5 |
| C2' |
C3' |
H3' |
107.6 |
109.5 |
| C2' |
C3' |
H16 |
107.7 |
109.5 |
| H2' |
C2' |
H2'A |
110.4 |
109.5 |
| C3' |
C4' |
H4' |
109.5 |
109.5 |
| C3' |
C4' |
H4'A |
109.4 |
109.5 |
| C3' |
C4' |
H14 |
109.5 |
109.5 |
| C4' |
C3' |
H3' |
107.6 |
109.4 |
| C4' |
C3' |
H16 |
107.6 |
109.4 |
| HN3S |
N3S |
HN3A |
109.5 |
120.1 |
| H4' |
C4' |
H4'A |
109.5 |
109.5 |
| H4' |
C4' |
H14 |
109.5 |
109.5 |
| H4'A |
C4' |
H14 |
109.5 |
109.4 |
| H3' |
C3' |
H16 |
111.2 |
109.5 |
Torsion Angles for RZ0
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1' |
N' |
C7 |
HN' |
180.0 |
180.1 |
| O' |
C7 |
N' |
C1 |
191.6 |
180.0 |
| HN' |
N' |
C7 |
O' |
339.4 |
180.0 |
| HN' |
N' |
C7 |
C1 |
147.8 |
359.9 |
| O' |
C7 |
N' |
HN' |
339.4 |
180.0 |
| N' |
C7 |
O' |
C1 |
169.5 |
180.0 |
| N' |
C7 |
C1 |
C5 |
193.6 |
180.0 |
| O' |
C7 |
C1 |
C5 |
359.9 |
360.0 |
| C5 |
C1 |
C3 |
C2 |
359.1 |
359.9 |
| C5 |
C1 |
C3 |
H3 |
179.1 |
180.0 |
| C6 |
C5 |
C1 |
H5 |
180.0 |
180.0 |
| C1 |
C5 |
C6 |
H6 |
180.5 |
180.1 |
| N' |
C7 |
C1 |
C3 |
13.6 |
0.3 |
| O' |
C7 |
C1 |
C3 |
179.9 |
180.2 |
| C3 |
C1 |
C5 |
C6 |
358.4 |
360.0 |
| C3 |
C1 |
C5 |
H5 |
178.4 |
180.0 |
| C1 |
C3 |
C2 |
C4 |
4.5 |
0.1 |
| C1 |
C3 |
C2 |
H2 |
184.5 |
180.0 |
| C2 |
C4 |
S |
O2S |
61.5 |
336.4 |
| C3 |
C2 |
C4 |
H2 |
180.0 |
179.9 |
| C3 |
C2 |
H2 |
C4 |
180.0 |
180.1 |
| C2 |
C3 |
C1 |
C5 |
359.1 |
359.9 |
| C1 |
C3 |
C2 |
H3 |
180.0 |
180.1 |
| C4 |
C2 |
C3 |
H2 |
180.0 |
180.1 |
| H3 |
C3 |
C1 |
C5 |
179.1 |
180.0 |
| C1 |
C3 |
H3 |
C2 |
180.0 |
179.9 |
| H3 |
C3 |
C2 |
C4 |
184.6 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
4.5 |
359.9 |
| O1S |
S |
C4 |
O2S |
126.7 |
227.1 |
| C1 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| C1 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
0.5 |
0.0 |
| C6 |
C4 |
S |
O2S |
246.6 |
156.5 |
| C1 |
C5 |
C6 |
C4 |
0.5 |
0.0 |
| C6 |
C4 |
C2 |
H2 |
174.4 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
0.5 |
0.0 |
| C1 |
C7 |
N' |
HN' |
147.8 |
359.9 |
| N' |
C7 |
C1 |
O' |
193.6 |
180.0 |
| C7 |
C1 |
C5 |
H5 |
358.4 |
0.3 |
| C7 |
C1 |
C3 |
H3 |
359.1 |
359.8 |
| C7 |
N' |
C1' |
HN' |
180.0 |
179.9 |
| H1' |
C1' |
N' |
HN' |
168.6 |
120.1 |
| C2' |
C1' |
H1' |
H1'A |
234.0 |
239.9 |
| H1'A |
C1' |
N' |
HN' |
288.5 |
240.0 |
| C2' |
C1' |
H1'A |
H1' |
126.0 |
120.1 |
| C4 |
S |
O1S |
O2S |
236.5 |
123.0 |
| C2' |
C1' |
N' |
HN' |
48.5 |
0.0 |
| H1' |
C1' |
C2' |
H1'A |
120.0 |
120.0 |
| C3' |
C2' |
C1' |
H1' |
306.8 |
60.0 |
| C3' |
C2' |
C1' |
H1'A |
186.8 |
300.0 |
| H2' |
C2' |
C3' |
H2'A |
120.0 |
120.0 |
| C2' |
C3' |
C4' |
H4' |
180.0 |
180.0 |
| C2' |
C3' |
C4' |
H4'A |
300.0 |
300.0 |
| C2' |
C3' |
C4' |
H14 |
60.0 |
59.9 |
| C4' |
C3' |
C2' |
H3' |
240.0 |
240.0 |
| C4' |
C3' |
C2' |
H16 |
120.0 |
120.0 |
| H3' |
C3' |
C2' |
H16 |
240.0 |
240.0 |
| H2' |
C2' |
C1' |
H1' |
66.8 |
180.0 |
| H2' |
C2' |
C1' |
H1'A |
306.8 |
60.0 |
| C3' |
C2' |
H2' |
H2'A |
241.2 |
240.0 |
| H2' |
C2' |
C3' |
C4' |
29.6 |
60.0 |
| H2' |
C2' |
C3' |
H3' |
149.6 |
180.0 |
| H2' |
C2' |
C3' |
H16 |
269.6 |
300.0 |
| H2'A |
C2' |
C1' |
H1' |
186.8 |
300.0 |
| H2'A |
C2' |
C1' |
H1'A |
66.8 |
180.0 |
| C3' |
C2' |
H2'A |
H2' |
118.8 |
120.0 |
| H2'A |
C2' |
C3' |
C4' |
269.6 |
300.0 |
| H2'A |
C2' |
C3' |
H3' |
29.6 |
60.0 |
| H2'A |
C2' |
C3' |
H16 |
149.6 |
180.0 |
| C4' |
C3' |
C2' |
H2' |
29.6 |
60.0 |
| C4' |
C3' |
C2' |
H2'A |
269.6 |
300.0 |
| C2' |
C3' |
C4' |
H3' |
120.0 |
120.0 |
| C2' |
C3' |
C4' |
H16 |
240.0 |
240.0 |
| H4' |
C4' |
C3' |
H4'A |
240.0 |
239.9 |
| H4' |
C4' |
C3' |
H14 |
120.0 |
120.0 |
| H4'A |
C4' |
C3' |
H14 |
240.0 |
240.1 |
| H3' |
C3' |
C4' |
H16 |
120.0 |
120.0 |
| C3' |
C4' |
H4' |
H4'A |
120.0 |
120.0 |
| C3' |
C4' |
H4' |
H14 |
240.0 |
240.0 |
| H4' |
C4' |
C3' |
H3' |
60.0 |
59.9 |
| H4' |
C4' |
C3' |
H16 |
300.0 |
300.0 |
| H4'A |
C4' |
H4' |
H14 |
120.0 |
119.9 |
| C3' |
C4' |
H4'A |
H4' |
240.0 |
239.9 |
| C3' |
C4' |
H4'A |
H14 |
120.0 |
119.9 |
| H4'A |
C4' |
C3' |
H3' |
180.0 |
180.0 |
| H4'A |
C4' |
C3' |
H16 |
60.0 |
60.1 |
| H4' |
C4' |
H4'A |
H14 |
240.0 |
240.0 |
| C3' |
C4' |
H14 |
H4' |
120.0 |
120.0 |
| C3' |
C4' |
H14 |
H4'A |
240.0 |
240.0 |
| H14 |
C4' |
C3' |
H3' |
300.0 |
299.9 |
| H14 |
C4' |
C3' |
H16 |
180.0 |
180.0 |
| H4' |
C4' |
H14 |
H4'A |
120.0 |
120.0 |
| H3' |
C3' |
C2' |
H2' |
149.6 |
180.0 |
| H3' |
C3' |
C2' |
H2'A |
29.6 |
60.0 |
| C2' |
C3' |
H3' |
C4' |
235.4 |
240.0 |
| C2' |
C3' |
H3' |
H16 |
117.7 |
120.0 |
| H3' |
C3' |
C4' |
H4' |
60.0 |
59.9 |
| H3' |
C3' |
C4' |
H4'A |
180.0 |
180.0 |
| H3' |
C3' |
C4' |
H14 |
300.0 |
299.9 |
| C4' |
C3' |
H3' |
H16 |
242.3 |
240.1 |
| H16 |
C3' |
C2' |
H2' |
269.6 |
300.0 |
| H16 |
C3' |
C2' |
H2'A |
149.6 |
180.0 |
| C2' |
C3' |
H16 |
C4' |
124.7 |
120.0 |
| C2' |
C3' |
H16 |
H3' |
242.3 |
240.0 |
| H16 |
C3' |
C4' |
H4' |
300.0 |
300.0 |
| H16 |
C3' |
C4' |
H4'A |
60.0 |
60.1 |
| H16 |
C3' |
C4' |
H14 |
180.0 |
180.0 |
| C4' |
C3' |
H16 |
H3' |
117.7 |
119.9 |