PDB Chemical Component RYU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RYU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.453 1.384
C1 C6 1.448 1.375
C1 H1 1.103 1.080
C2 C3 1.453 1.382
C2 H2 1.103 1.080
C3 C4 1.455 1.380
C3 H3 1.103 1.080
C4 C5 1.451 1.395
C4 H4 1.102 1.080
C5 C6 1.445 1.392
C5 N9 1.413 1.393
C6 C7 1.449 1.511
C7 C71 1.504 1.530
C7 O71 1.336 1.428
C7 C8 1.456 1.513
C71 H711 1.115 1.090
C71 H712 1.115 1.091
C71 H713 1.114 1.089
O71 H71 0.950 0.967
C8 N9 1.414 1.358
C8 C10 1.448 1.364
N9 H9 1.020 0.970
C10 C11 1.512 1.468
C10 C14 1.447 1.481
C11 O11 1.227 1.218
C11 N12 1.328 1.343
N12 C13 1.414 1.390
N12 H12 1.020 0.971
C13 C14 1.452 1.400
C13 C18 1.450 1.390
C14 C15 1.455 1.390
C15 C16 1.449 1.380
C15 H15 1.103 1.079
C16 C17 1.456 1.385
C16 S19 1.802 1.762
C17 C18 1.456 1.380
C17 H17 1.103 1.080
C18 H18 1.103 1.080
S19 O19 1.748 1.420
S19 O1 1.728 1.421
S19 N20 1.777 1.655
N20 C21 1.480 1.469
N20 C25 1.470 1.468
C21 C22 1.525 1.531
C21 H211 1.115 1.089
C21 H212 1.115 1.090
C22 C23 1.531 1.531
C22 H221 1.116 1.090
C22 H222 1.115 1.089
C23 O23 1.432 1.429
C23 C24 1.527 1.530
C23 H23 1.115 1.090
O23 HA 0.950 0.966
C24 C25 1.517 1.527
C24 H241 1.115 1.090
C24 H242 1.115 1.089
C25 H251 1.114 1.091
C25 H252 1.115 1.091

Bond Angles for RYU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 116.2 120.0
C2 C1 H1 121.9 120.0
C1 C2 C3 121.7 119.9
C1 C2 H2 119.2 120.0
C6 C1 H1 121.9 120.0
C1 C6 C5 121.5 120.7
C1 C6 C7 128.3 132.9
C3 C2 H2 119.1 120.1
C2 C3 C4 120.9 120.4
C2 C3 H3 119.6 119.9
C4 C3 H3 119.6 119.8
C3 C4 C5 116.4 120.1
C3 C4 H4 121.8 119.9
C5 C4 H4 121.8 119.9
C4 C5 C6 121.7 118.9
C4 C5 N9 128.3 130.7
C6 C5 N9 109.9 110.4
C5 C6 C7 110.2 106.4
C5 N9 C8 102.8 112.0
C5 N9 H9 128.6 124.0
C6 C7 C71 108.5 110.5
C6 C7 O71 111.0 110.5
C6 C7 C8 99.8 104.3
C71 C7 O71 108.4 110.4
C71 C7 C8 114.8 110.5
C7 C71 H711 108.4 109.5
C7 C71 H712 112.6 109.5
C7 C71 H713 112.6 109.5
O71 C7 C8 114.1 110.5
C7 O71 H71 111.0 106.9
C7 C8 N9 116.3 106.9
C7 C8 C10 125.4 126.5
H711 C71 H712 112.6 109.4
H711 C71 H713 112.6 109.5
H712 C71 H713 97.9 109.5
N9 C8 C10 118.2 126.6
C8 N9 H9 128.6 124.0
C8 C10 C11 127.1 127.4
C8 C10 C14 131.1 127.5
C11 C10 C14 99.9 105.0
C10 C11 O11 120.5 125.9
C10 C11 N12 118.7 108.1
C10 C14 C13 106.1 106.4
C10 C14 C15 128.4 133.3
O11 C11 N12 120.8 126.0
C11 N12 C13 100.7 111.4
C11 N12 H12 129.7 124.4
C13 N12 H12 129.7 124.2
N12 C13 C14 114.6 109.1
N12 C13 C18 126.2 131.7
C14 C13 C18 119.0 119.1
C13 C14 C15 125.3 120.4
C13 C18 C17 117.0 120.0
C13 C18 H18 121.5 120.0
C14 C15 C16 113.5 119.7
C14 C15 H15 123.2 120.1
C16 C15 H15 123.2 120.1
C15 C16 C17 121.8 120.1
C15 C16 S19 125.1 120.0
C17 C16 S19 113.0 120.0
C16 C17 C18 121.9 120.7
C16 C17 H17 119.0 119.7
C16 S19 O19 104.2 105.7
C16 S19 O1 93.9 105.8
C16 S19 N20 125.4 107.4
C18 C17 H17 119.1 119.6
C17 C18 H18 121.5 120.0
O19 S19 O1 118.5 125.4
O19 S19 N20 101.7 105.8
O1 S19 N20 114.1 105.7
S19 N20 C21 122.4 120.6
S19 N20 C25 120.2 120.7
C21 N20 C25 116.1 118.7
N20 C21 C22 111.9 108.8
N20 C21 H211 111.3 109.6
N20 C21 H212 111.3 109.6
N20 C25 C24 111.3 109.1
N20 C25 H251 111.5 109.7
N20 C25 H252 111.5 109.3
C22 C21 H211 111.3 109.6
C22 C21 H212 111.3 109.6
C21 C22 C23 113.1 109.3
C21 C22 H221 110.9 109.5
C21 C22 H222 110.9 109.5
H211 C21 H212 99.0 109.6
C23 C22 H221 110.9 109.5
C23 C22 H222 110.9 109.4
C22 C23 O23 115.0 109.5
C22 C23 C24 111.2 109.5
C22 C23 H23 105.0 109.4
H221 C22 H222 99.5 109.5
O23 C23 C24 114.3 109.5
O23 C23 H23 105.0 109.4
C23 O23 HA 115.0 106.8
C24 C23 H23 105.1 109.4
C23 C24 C25 112.7 109.4
C23 C24 H241 111.0 109.5
C23 C24 H242 111.0 109.5
C25 C24 H241 111.0 109.6
C25 C24 H242 111.0 109.4
C24 C25 H251 111.5 109.6
C24 C25 H252 111.5 109.6
H241 C24 H242 99.3 109.5
H251 C25 H252 98.9 109.7

Torsion Angles for RYU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 H1 180.0 180.0
C2 C1 C6 C5 357.0 359.9
C2 C1 C6 C7 178.0 180.1
C3 C2 C1 H2 180.0 180.1
C1 C2 C3 C4 11.4 359.9
C1 C2 C3 H3 191.4 180.0
C2 C1 C6 H1 180.0 180.0
C6 C1 C2 C3 351.5 0.1
C6 C1 C2 H2 171.6 180.0
C4 C5 C6 C1 12.0 0.1
C1 C6 C5 N9 190.4 180.0
C5 C6 C1 C7 179.1 179.8
C1 C6 C7 C71 49.6 61.2
C1 C6 C7 O71 290.7 298.7
C1 C6 C7 C8 170.0 179.9
C2 C1 H1 C6 180.0 180.0
H1 C1 C2 C3 171.5 180.1
H1 C1 C2 H2 351.6 360.0
H1 C1 C6 C5 177.0 179.9
H1 C1 C6 C7 358.0 0.1
C3 C2 C1 C6 351.5 0.1
C3 C2 C1 H1 171.5 180.1
C1 C2 C3 H2 180.0 179.9
C4 C3 C2 H3 180.0 179.9
C2 C3 C4 C5 357.6 0.1
C2 C3 C4 H4 177.6 180.1
H2 C2 C1 C6 171.6 180.0
H2 C2 C1 H1 351.6 360.0
C1 C2 H2 C3 180.0 180.1
H2 C2 C3 C4 191.4 180.0
H2 C2 C3 H3 11.4 0.1
C4 C3 C2 H2 191.4 180.0
C2 C3 C4 H3 180.0 180.1
C5 C4 C3 H4 180.0 180.0
C3 C4 C5 C6 351.1 359.9
C3 C4 C5 N9 172.9 180.0
H3 C3 C2 H2 11.4 0.1
C2 C3 H3 C4 180.0 179.9
H3 C3 C4 C5 177.6 180.0
H3 C3 C4 H4 357.6 0.0
C1 C6 C5 C4 12.0 0.1
C5 C4 C3 H3 177.6 180.0
C3 C4 C5 H4 180.0 180.0
C6 C5 C4 N9 178.2 179.9
C4 C5 C6 C7 191.2 180.0
C4 C5 N9 C8 173.1 180.0
C4 C5 N9 H9 353.1 0.0
H4 C4 C3 H3 357.6 0.0
C3 C4 H4 C5 180.0 180.0
H4 C4 C5 C6 171.0 179.9
H4 C4 C5 N9 352.9 360.0
C5 C6 C1 H1 177.0 179.9
C1 C6 C5 C7 180.8 180.2
C6 C5 C4 H4 171.0 179.9
C4 C5 C6 N9 181.5 180.1
C6 C5 N9 C8 354.8 0.1
C6 C5 N9 H9 174.8 180.1
C5 C6 C7 C71 230.5 241.4
C5 C6 C7 O71 111.5 118.9
C5 C6 C7 C8 350.9 0.1
N9 C5 C4 H4 352.9 360.0
C4 C5 N9 C6 178.3 179.9
N9 C5 C6 C7 9.7 359.9
C7 C8 N9 C5 359.1 360.0
C5 N9 C8 C10 175.0 180.0
C8 N9 C5 H9 180.0 180.0
C7 C6 C1 H1 358.0 0.1
C1 C6 C7 C5 179.1 179.8
C7 C6 C5 N9 9.7 359.9
C71 C7 C6 O71 119.0 122.4
C71 C7 C6 C8 239.6 241.3
C6 C7 C71 H711 180.0 290.8
C6 C7 C71 H712 54.7 50.8
C6 C7 C71 H713 305.3 170.8
O71 C7 C6 C8 120.6 118.8
C6 C7 O71 H71 180.0 63.1
C6 C7 C8 N9 6.3 360.0
C6 C7 C8 C10 190.7 179.9
C6 C7 C71 O71 239.4 237.5
C6 C7 C71 C8 110.6 114.9
O71 C7 C71 C8 231.2 237.4
C71 C7 O71 H71 61.0 300.6
C71 C7 C8 N9 122.0 118.7
C71 C7 C8 C10 306.4 298.7
H711 C71 C7 H712 125.3 240.0
H711 C71 C7 H713 234.8 120.0
H712 C71 C7 H713 109.5 240.0
C6 C7 O71 C71 119.0 122.5
C6 C7 O71 C8 248.2 245.0
C71 C7 O71 C8 129.2 122.5
O71 C7 C71 H711 300.6 53.4
O71 C7 C71 H712 175.3 173.3
O71 C7 C71 H713 65.8 293.3
O71 C7 C8 N9 247.9 241.2
O71 C7 C8 C10 72.4 61.1
C5 N9 C8 C7 359.1 360.0
C6 C7 C8 C71 244.3 241.3
C6 C7 C8 O71 118.4 118.8
C71 C7 C8 O71 234.1 237.5
C8 C7 C71 H711 69.4 175.9
C8 C7 C71 H712 304.1 295.9
C8 C7 C71 H713 194.6 55.9
C8 C7 O71 H71 291.8 178.1
N9 C8 C7 C10 175.5 180.0
C7 C8 N9 H9 179.1 180.0
C7 C8 C10 C11 158.6 173.5
C7 C8 C10 C14 357.7 353.1
H711 C71 C7 O71 300.6 53.4
H711 C71 C7 C8 69.4 175.9
C7 C71 H711 H712 234.7 120.0
C7 C71 H711 H713 125.2 239.9
H712 C71 H711 H713 250.5 120.0
H712 C71 C7 O71 175.3 173.3
H712 C71 C7 C8 304.1 295.9
C7 C71 H712 H711 123.0 240.0
C7 C71 H712 H713 241.5 120.0
H711 C71 H712 H713 118.5 240.0
H713 C71 C7 O71 65.8 293.3
H713 C71 C7 C8 194.6 55.9
C7 C71 H713 H711 237.0 120.1
C7 C71 H713 H712 118.5 240.0
H711 C71 H713 H712 241.5 120.0
H71 O71 C7 C8 291.8 178.1
C5 N9 C8 H9 180.0 180.0
C7 C8 N9 C10 184.1 180.0
N9 C8 C10 C11 343.1 353.5
N9 C8 C10 C14 182.2 173.1
C7 C8 C10 N9 175.4 180.0
C10 C8 N9 H9 355.0 360.0
C11 C10 C8 C14 160.9 180.3
C8 C10 C11 O11 12.1 360.0
C8 C10 C11 N12 194.5 179.9
C8 C10 C14 C13 163.4 179.9
C8 C10 C14 C15 347.9 0.7
C5 N9 H9 C8 180.0 180.0
H9 N9 C8 C10 355.0 360.0
C8 C10 C11 C14 194.5 179.7
C11 C10 C14 C13 358.7 359.6
C11 C10 C14 C15 183.2 180.4
O11 C11 C10 N12 177.6 180.1
C10 C11 N12 C13 1.3 0.1
C10 C11 N12 H12 181.2 180.0
C8 C10 C14 C11 164.6 180.3
C14 C10 C11 O11 177.6 180.3
C14 C10 C11 N12 0.0 0.2
N12 C13 C14 C10 2.3 0.4
C10 C14 C13 C18 185.1 180.1
C13 C14 C10 C15 175.5 179.2
C10 C14 C15 C16 165.2 179.7
C10 C14 C15 H15 345.2 359.4
O11 C11 C10 C14 177.6 180.3
C10 C11 O11 N12 182.4 179.9
O11 C11 N12 C13 183.6 180.0
O11 C11 N12 H12 3.6 359.9
N12 C11 C10 C14 0.0 0.2
C10 C11 N12 O11 177.6 180.1
C13 N12 C11 H12 180.0 180.1
C11 N12 C13 C14 357.9 359.7
C11 N12 C13 C18 174.9 180.0
C10 C14 C13 N12 2.3 0.4
C11 N12 C13 H12 180.0 179.9
C14 C13 N12 C18 183.0 179.7
N12 C13 C14 C15 177.9 179.7
N12 C13 C18 C17 187.0 179.9
N12 C13 C18 H18 7.0 359.9
C11 N12 H12 C13 180.0 180.1
H12 N12 C13 C14 177.9 179.8
H12 N12 C13 C18 354.9 0.1
C10 C14 C13 C15 184.3 180.7
C14 C13 N12 H12 177.9 179.8
N12 C13 C14 C18 177.2 180.3
C14 C13 C18 C17 3.9 0.2
C14 C13 C18 H18 183.9 180.3
C13 C14 C15 C16 350.5 0.6
C13 C14 C15 H15 170.5 180.3
C18 C13 N12 H12 354.9 0.1
N12 C13 C18 C14 183.1 179.7
C18 C13 C14 C15 0.7 359.5
C16 C17 C18 C13 0.7 0.0
C13 C18 C17 H17 180.7 180.0
C17 C18 C13 H18 180.0 180.0
C10 C14 C15 C13 174.7 179.1
C15 C14 C13 C18 0.7 359.5
C16 C15 C14 H15 180.0 180.2
C14 C15 C16 C17 13.9 359.7
C14 C15 C16 S19 197.9 179.8
C14 C15 C16 H15 180.0 179.8
C17 C16 C15 S19 176.0 180.0
C15 C16 C17 C18 349.6 360.0
C15 C16 C17 H17 169.6 180.0
C15 C16 S19 O19 96.8 22.6
C15 C16 S19 O1 217.6 157.4
C15 C16 S19 N20 341.0 270.0
C14 C15 H15 C16 180.0 180.3
H15 C15 C16 C17 193.9 180.0
H15 C15 C16 S19 17.9 0.0
C13 C18 C17 C16 0.7 0.0
C17 C16 C15 H15 193.9 180.0
C15 C16 C17 S19 183.6 180.0
C17 C16 S19 O19 280.5 202.7
C17 C16 S19 O1 41.3 337.4
C17 C16 S19 N20 164.7 90.0
C18 C17 C16 H17 180.0 180.0
C16 C17 C18 H18 180.7 180.0
S19 C16 C15 H15 17.9 0.0
C15 C16 S19 C17 176.3 180.0
S19 C16 C17 C18 166.1 179.9
S19 C16 C17 H17 346.1 359.9
O19 S19 C16 O1 239.3 225.2
O19 S19 C16 N20 115.9 112.7
O1 S19 C16 N20 236.6 247.4
C16 S19 N20 C21 146.6 90.0
C16 S19 N20 C25 340.0 269.7
C13 C18 C17 H18 180.0 180.0
C18 C17 C16 S19 166.1 179.9
C16 C17 C18 H17 180.0 180.0
H17 C17 C16 S19 346.1 359.9
C16 C17 H17 C18 180.0 180.0
H17 C17 C18 H18 0.7 0.0
C13 C18 H18 C17 180.0 180.0
H18 C18 C17 H17 0.7 0.0
C16 S19 O19 O1 102.5 123.1
C16 S19 O19 N20 228.5 246.2
O1 S19 O19 N20 126.0 123.1
O19 S19 N20 C21 29.6 337.4
O19 S19 N20 C25 223.0 157.1
C16 S19 O1 O19 251.6 236.9
C16 S19 O1 N20 131.8 113.7
O19 S19 O1 N20 240.2 236.8
O1 S19 N20 C21 260.7 202.6
O1 S19 N20 C25 94.1 22.3
C16 S19 N20 O19 117.0 112.6
C16 S19 N20 O1 245.9 247.4
O19 S19 N20 O1 128.9 134.8
C21 N20 S19 C25 166.6 180.3
S19 N20 C21 C22 243.6 126.4
S19 N20 C21 H211 118.4 246.2
S19 N20 C21 H212 8.9 6.6
S19 N20 C25 C24 114.9 233.6
S19 N20 C25 H251 349.6 353.6
S19 N20 C25 H252 240.1 113.8
S19 N20 C21 C25 192.9 179.7
C21 N20 C25 C24 307.5 53.3
C21 N20 C25 H251 182.3 173.3
C21 N20 C25 H252 72.8 293.5
C22 C21 N20 H211 125.3 240.1
C22 C21 N20 H212 234.7 119.8
N20 C21 C22 C23 311.3 54.6
N20 C21 C22 H221 186.1 174.6
N20 C21 C22 H222 76.6 294.7
H211 C21 N20 H212 109.5 239.7
S19 N20 C25 C21 167.4 180.3
C25 N20 C21 C22 50.7 306.6
C25 N20 C21 H211 285.4 66.5
C25 N20 C21 H212 176.0 186.8
C23 C24 C25 N20 52.4 305.6
N20 C25 C24 H241 287.2 185.6
N20 C25 C24 H242 177.7 65.5
C24 C25 N20 H251 125.3 240.0
C24 C25 N20 H252 234.8 119.8
H251 C25 N20 H252 109.5 239.8
C22 C21 N20 C25 50.7 306.6
N20 C21 C22 H211 234.8 119.9
N20 C21 C22 H212 125.3 240.2
H211 C21 C22 H212 250.5 120.3
C23 C22 C21 H221 125.3 240.0
C23 C22 C21 H222 234.8 119.9
C21 C22 C23 O23 182.0 178.6
C21 C22 C23 C24 50.0 298.7
C21 C22 C23 H23 296.9 58.6
H221 C22 C21 H222 109.5 239.9
H211 C21 N20 C25 285.4 66.5
N20 C21 H211 C22 125.6 240.6
N20 C21 H211 H212 242.8 120.3
C22 C21 H211 H212 117.2 239.7
H211 C21 C22 C23 76.6 294.8
H211 C21 C22 H221 311.3 54.7
H211 C21 C22 H222 201.8 174.9
H212 C21 N20 C25 176.0 186.8
N20 C21 H212 C22 234.4 119.3
N20 C21 H212 H211 117.2 239.7
C22 C21 H212 H211 242.8 120.3
H212 C21 C22 C23 186.0 174.4
H212 C21 C22 H221 60.8 294.4
H212 C21 C22 H222 311.3 54.5
C23 C22 C21 H211 76.6 294.8
C23 C22 C21 H212 186.0 174.4
C21 C22 C23 H221 234.7 120.0
C21 C22 C23 H222 125.2 240.0
H221 C22 C23 H222 250.5 120.1
O23 C23 C22 C24 131.9 239.9
O23 C23 C22 H23 245.0 120.0
C22 C23 O23 HA 180.0 180.0
C24 C23 C22 H23 113.1 240.0
C22 C23 C24 C25 308.1 61.2
C22 C23 C24 H241 73.4 181.3
C22 C23 C24 H242 182.8 301.4
H221 C22 C21 H211 311.3 54.7
H221 C22 C21 H212 60.8 294.4
C21 C22 H221 C23 126.5 240.2
C21 C22 H221 H222 243.3 120.2
C23 C22 H221 H222 116.8 240.0
H221 C22 C23 O23 307.2 58.6
H221 C22 C23 C24 175.3 178.7
H221 C22 C23 H23 62.2 298.7
H222 C22 C21 H211 201.8 174.9
H222 C22 C21 H212 311.3 54.5
C21 C22 H222 C23 233.5 119.8
C21 C22 H222 H221 116.8 239.9
C23 C22 H222 H221 243.2 120.0
H222 C22 C23 O23 56.7 298.6
H222 C22 C23 C24 284.8 58.6
H222 C22 C23 H23 171.7 178.6
O23 C23 C22 H221 307.2 58.6
O23 C23 C22 H222 56.7 298.6
C22 C23 O23 C24 229.6 120.1
C22 C23 O23 H23 114.9 240.0
C24 C23 O23 H23 245.4 119.9
O23 C23 C24 C25 175.8 181.2
O23 C23 C24 H241 301.1 301.4
O23 C23 C24 H242 50.5 61.4
N20 C25 C24 C23 52.4 305.6
C24 C23 C22 H221 175.3 178.7
C24 C23 C22 H222 284.8 58.6
C22 C23 C24 O23 132.3 239.9
C22 C23 C24 H23 246.9 120.0
O23 C23 C24 H23 114.6 240.1
C24 C23 O23 HA 310.4 59.9
C25 C24 C23 H241 234.7 239.9
C25 C24 C23 H242 125.3 119.8
C23 C24 C25 H251 177.7 185.5
C23 C24 C25 H252 287.2 65.2
H241 C24 C23 H242 250.5 239.9
H23 C23 C22 H221 62.2 298.7
H23 C23 C22 H222 171.7 178.6
C22 C23 H23 O23 238.3 120.0
C22 C23 H23 C24 117.4 240.0
O23 C23 H23 C24 239.1 120.0
H23 C23 O23 HA 65.0 300.0
H23 C23 C24 C25 61.2 301.2
H23 C23 C24 H241 186.5 61.3
H23 C23 C24 H242 295.9 181.4
HA O23 C23 C24 310.4 59.9
HA O23 C23 H23 65.0 300.0
N20 C25 C24 H251 234.7 120.1
N20 C25 C24 H252 125.3 240.4
C25 C24 C23 H23 61.2 301.2
C23 C24 C25 H241 125.3 120.0
C23 C24 C25 H242 234.8 240.1
H241 C24 C25 H242 109.5 120.1
H251 C25 C24 H252 250.5 120.3
H241 C24 C23 H23 186.5 61.3
C23 C24 H241 C25 233.8 240.0
C23 C24 H241 H242 116.9 120.0
C25 C24 H241 H242 243.1 240.0
H241 C24 C25 H251 52.4 65.5
H241 C24 C25 H252 161.9 305.2
H242 C24 C23 H23 295.9 181.4
C23 C24 H242 C25 126.2 119.8
C23 C24 H242 H241 243.1 240.0
C25 C24 H242 H241 116.9 120.2
H242 C24 C25 H251 302.9 305.4
H242 C24 C25 H252 52.4 185.1
N20 C25 H251 C24 125.1 240.3
N20 C25 H251 H252 242.5 120.0
H251 C25 C24 H241 52.4 65.5
H251 C25 C24 H242 302.9 305.4
C24 C25 H251 H252 117.4 239.7
N20 C25 H252 C24 234.9 119.5
N20 C25 H252 H251 117.5 239.8
H252 C25 C24 H241 161.9 305.2
H252 C25 C24 H242 52.4 185.1
C24 C25 H252 H251 242.6 120.3