PDB Chemical Component RY7

Ideal Model

Chemical Description

Name 4,6-dideoxy-4-{[(1S,2S,3S,4R,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl]amino}-alpha-D-glucopyranose
Formula C13 H25 N O8
Formal charge 0
Molecular weight 323.340 g/mol
Component type D-saccharide, alpha linking

Chemical features

Atom count 47
Chiral atom count 10
Chiral atoms C1A C2A C3A C4A C5A C1 C2 C3 C4 C5
Observed leaving atoms O1 HO2 HO3 HO1
Bond count 48
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 4,6-dideoxy-4-{[(1S,2S,3S,4R,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl]amino}-alpha-D-glucopyranose
Systematic name (OpenEye OEToolkits) (2~{S},3~{R},4~{S},5~{S},6~{R})-5-[[(1~{S},2~{S},3~{S},4~{R},5~{R})-5-(hydroxymethyl)-2,3,4-tris(oxidanyl)cyclohexyl]amino]-6-methyl-oxane-2,3,4-triol

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1N[C@H]2C[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O
SMILES (CACTVS) C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1N[CH]2C[CH](CO)[CH](O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)N[C@H]2C[C@@H]([C@H]([C@@H]([C@H]2O)O)O)CO
InChI descriptor InChI=1S/C13H25NO8/c1-4-7(10(18)12(20)13(21)22-4)14-6-2-5(3-15)8(16)11(19)9(6)17/h4-21H,2-3H2,1H3/t4-,5-,6+,7-,8-,9+,10+,11+,12-,13+/m1/s1
InChIKey descriptor PFUNPXBPUXETIR-KJEWDVBSSA-N

Status Information

Last modified 2020-07-17
Created 2020-03-02
Release status REL
Model PDB code 1GAI
Processing site RCSB