PDB Chemical Component RY7

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RY7

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	C2	1.424	1.429
C1	C2	1.536	1.530
C1	O1	1.402	1.429
C1	O5	1.428	1.429
C2	C3	1.542	1.532
O5	C5	1.448	1.430
C3	O3	1.425	1.429
C3	C4	1.538	1.531
C5	C4	1.541	1.531
C5	C6	1.517	1.530
C4	N4	1.482	1.469
N4	C1A	1.484	1.469
C1A	C7A	1.541	1.530
C1A	C2A	1.531	1.530
O2A	C2A	1.419	1.429
C7A	C5A	1.554	1.530
C2A	C3A	1.527	1.530
C5A	C6A	1.531	1.530
C5A	C4A	1.542	1.530
C3A	O3A	1.421	1.429
C3A	C4A	1.526	1.529
C6A	O6A	1.428	1.429
C4A	O4A	1.427	1.429
C1A	H1A	1.100	1.090
C2A	H2A	1.100	1.089
C3A	H3A	1.100	1.091
C4A	H4A	1.100	1.090
C5A	H5A	1.100	1.090
C6A	H6A1	1.100	1.090
C6A	H6A2	1.100	1.089
C7A	H7A1	1.100	1.091
C7A	H7A2	1.100	1.089
O2A	HOA2	0.950	0.967
O3A	HOA3	0.950	0.968
O4A	HOA4	0.950	0.967
O6A	HOA6	0.950	0.967
C1	H1	1.100	1.090
C2	H2	1.100	1.090
C3	H3	1.100	1.090
C4	H4	1.100	1.090
C5	H5	1.100	1.089
C6	H62	1.100	1.090
C6	H63	1.100	1.090
C6	H61	1.100	1.090
N4	HN41	1.000	1.009
O2	HO2	0.950	0.968
O3	HO3	0.950	0.967
O1	HO1	0.950	0.967

Bond Angles for RY7

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O2	C2	H2	110.6	109.6
C2	C1	O1	105.7	109.5
C2	C1	O5	110.0	109.5
C1	C2	C3	109.8	109.1
C2	C1	H1	109.1	109.5
C1	C2	H2	109.1	109.5
O5	C1	O1	110.3	109.4
O1	C1	H1	111.0	109.5
C1	O1	HO1	109.5	114.1
C1	O5	C5	115.7	114.1
O5	C1	H1	110.6	109.5
C2	C3	O3	110.4	109.6
C2	C3	C4	108.5	109.1
C3	C2	H2	109.0	109.5
C2	C3	H3	108.5	109.6
O5	C5	H5	109.6	109.5
C4	C3	O3	110.9	109.6
O3	C3	H3	110.0	109.5
C3	O3	HO3	109.5	114.1
C3	C4	N4	111.2	109.6
C4	C3	H3	108.5	109.6
C3	C4	H4	108.9	109.5
C5	C4	N4	111.6	109.5
C5	C4	H4	108.8	109.6
C6	C5	H5	108.7	109.5
C5	C6	H62	109.5	109.5
C5	C6	H63	109.4	109.5
C5	C6	H61	109.5	109.4
N4	C4	H4	109.6	109.5
C4	N4	HN41	108.0	111.0
N4	C1A	H1A	108.4	109.4
C2A	C1A	C7A	110.8	109.5
C1A	C7A	C5A	115.7	109.4
C7A	C1A	H1A	107.7	109.5
C1A	C7A	H7A1	107.9	109.4
C1A	C7A	H7A2	107.9	109.5
C1A	C2A	C3A	110.1	109.4
C2A	C1A	H1A	107.8	109.5
C1A	C2A	H2A	108.7	109.5
O2A	C2A	H2A	110.3	109.5
C7A	C5A	H5A	107.8	109.4
C2A	C3A	O3A	109.4	109.4
C2A	C3A	C4A	110.4	109.5
C3A	C2A	H2A	108.8	109.5
C2A	C3A	H3A	108.8	109.5
C5A	C6A	O6A	111.6	109.4
C6A	C5A	H5A	108.1	109.5
C5A	C6A	H6A1	108.9	109.5
C5A	C6A	H6A2	108.9	109.5
C5A	C4A	O4A	109.8	109.4
C5A	C4A	H4A	108.3	109.5
C4A	C3A	O3A	109.2	109.5
O3A	C3A	H3A	110.3	109.4
C3A	O3A	HOA3	109.5	114.0
C3A	C4A	O4A	109.2	109.5
C4A	C3A	H3A	108.8	109.5
C3A	C4A	H4A	108.5	109.5
O6A	C6A	H6A1	108.9	109.4
O6A	C6A	H6A2	108.9	109.4
C6A	O6A	HOA6	109.5	114.0
O4A	C4A	H4A	109.8	109.4
C4A	O4A	HOA4	109.5	114.0
H6A1	C6A	H6A2	109.5	109.5
H7A1	C7A	H7A2	109.5	109.5
H62	C6	H63	109.5	109.5
H62	C6	H61	109.5	109.5
H63	C6	H61	109.5	109.5

Torsion Angles for RY7

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	C2	C1	O1	55.3	57.5
O2	C2	C1	O5	174.4	177.5
O2	C2	C1	H1	295.9	297.5
C1	C2	O2	H2	119.8	120.2
O2	C2	C3	O3	59.5	63.2
C3	C2	O2	H2	239.9	239.9
O2	C2	C3	H3	298.9	303.1
O2	C2	C1	H2	239.2	239.8
O5	C1	C2	O1	119.1	120.0
O1	C1	C2	H1	119.4	120.0
C2	C1	O1	HO1	180.0	180.0
C2	C1	O5	C5	304.0	298.8
O5	C1	C2	H1	238.5	240.0
C1	C2	C3	O3	179.0	183.1
C1	C2	C3	C4	300.7	303.0
C3	C2	C1	H2	119.3	119.9
C1	C2	C3	H3	58.4	63.0
C2	C1	O1	O5	118.9	120.0
O1	C1	C2	C3	295.5	297.6
C2	C1	O1	H1	241.8	240.0
O1	C1	C2	H2	176.1	177.7
O1	C1	O5	C5	60.3	58.9
O5	C1	O1	H1	123.0	120.0
C2	C1	O5	O1	243.8	240.0
O5	C1	C2	C3	54.5	57.6
C2	C1	O5	H1	120.6	120.0
O5	C1	C2	H2	295.2	297.7
O1	C1	O5	H1	236.8	240.0
O5	C1	O1	HO1	61.2	60.0
C1	O5	C5	H5	300.7	301.1
O2	C2	C3	H2	121.1	120.2
C3	C2	C1	O1	295.5	297.6
C3	C2	C1	O5	54.5	57.6
C3	C2	C1	H1	176.0	177.6
C1	C2	C3	H2	240.6	240.1
C4	C3	C2	O3	121.7	119.9
O3	C3	C2	H3	120.6	120.1
C2	C3	O3	HO3	180.0	300.1
C2	C3	C4	N4	183.0	176.9
C4	C3	C2	H3	242.3	240.1
C2	C3	C4	H4	303.9	297.0
C5	O5	C1	O1	60.3	58.9
C5	O5	C1	H1	183.5	178.9
O5	C5	C4	H4	57.4	62.4
C6	C5	O5	H5	242.8	240.0
O5	C5	C6	H62	180.0	293.7
O5	C5	C6	H63	300.0	53.7
O5	C5	C6	H61	60.0	173.7
C2	C3	O3	C4	120.3	119.6
O3	C3	C2	H2	298.4	303.0
C2	C3	O3	H3	240.3	239.8
O3	C3	C4	N4	304.4	296.8
C4	C3	O3	H3	120.1	120.2
O3	C3	C4	H4	65.3	56.9
C2	C3	C4	O3	238.6	240.1
C4	C3	C2	H2	60.1	62.9
C2	C3	C4	H3	117.7	119.9
O3	C3	C4	H3	239.0	239.9
C4	C3	O3	HO3	59.8	180.5
C5	C4	C3	N4	238.1	240.1
C5	C4	C3	H4	117.3	120.0
N4	C4	C3	H4	239.1	239.9
C3	C4	N4	HN41	246.2	263.0
C1	O5	C5	C4	59.6	61.1
C5	C4	C3	O3	182.5	176.9
C3	C4	C5	N4	121.6	120.0
C5	C4	C3	H3	303.5	297.0
C3	C4	C5	H4	242.7	240.1
N4	C4	C5	H4	121.1	120.1
C5	C4	N4	HN41	5.2	22.7
C1	O5	C5	C6	183.5	181.1
O5	C5	C6	H5	117.8	120.0
C6	C5	C4	N4	59.4	62.5
C6	C5	C4	H4	298.3	302.4
H62	C6	C5	H63	240.0	240.0
H62	C6	C5	H61	120.0	120.0
H63	C6	C5	H61	240.0	240.0
N4	C4	C3	O3	304.4	296.8
N4	C4	C3	H3	65.4	57.0
C3	C4	N4	H4	120.4	120.1
C5	C4	N4	H4	239.4	239.8
C4	N4	C1A	H1A	340.9	29.1
C7A	C1A	N4	H1A	118.7	119.9
N4	C1A	C7A	H7A1	197.0	180.0
N4	C1A	C7A	H7A2	315.2	300.0
C2A	C1A	N4	H1A	242.4	240.0
N4	C1A	C2A	H2A	172.3	180.0
N4	C1A	C7A	H1A	240.9	240.1
C7A	C1A	C2A	C3A	55.8	60.0
C2A	C1A	C7A	H1A	117.7	120.0
C7A	C1A	C2A	H2A	296.8	300.0
C1A	C7A	C5A	H5A	285.2	299.9
H7A1	C7A	C1A	H7A2	241.8	240.0
N4	C1A	C2A	H1A	118.0	120.0
C2A	C1A	C7A	C5A	312.9	300.0
C7A	C1A	C2A	H1A	242.4	240.0
C2A	C1A	C7A	H7A1	73.8	59.9
C2A	C1A	C7A	H7A2	192.0	179.9
O2A	C2A	C1A	H2A	239.3	240.0
C1A	C2A	C3A	O3A	176.4	180.0
C1A	C2A	C3A	C4A	296.6	300.0
C3A	C2A	C1A	H2A	119.1	120.0
C1A	C2A	C3A	H3A	55.9	60.0
O2A	C2A	C1A	H1A	293.6	300.0
C1A	C2A	O2A	H2A	119.8	120.0
O2A	C2A	C3A	O3A	55.8	60.0
C3A	C2A	O2A	H2A	240.6	240.0
O2A	C2A	C3A	H3A	295.3	300.0
C5A	C7A	C1A	H1A	195.2	180.0
C1A	C7A	C5A	H7A1	120.9	119.9
C1A	C7A	C5A	H7A2	239.1	240.0
C7A	C5A	C6A	O6A	297.1	175.0
C6A	C5A	C7A	H5A	242.1	240.0
C7A	C5A	C6A	H6A1	57.4	294.9
C7A	C5A	C6A	H6A2	176.8	55.0
C7A	C5A	C4A	O4A	189.9	180.0
C7A	C5A	C4A	H4A	70.0	60.0
C3A	C2A	C1A	C7A	55.8	60.0
C3A	C2A	C1A	H1A	173.4	180.0
C1A	C2A	C3A	H2A	240.9	240.0
O2A	C2A	C3A	H2A	120.4	120.0
C4A	C3A	C2A	O3A	120.2	120.0
O3A	C3A	C2A	H3A	120.5	119.9
C2A	C3A	O3A	HOA3	180.0	180.0
C2A	C3A	C4A	O4A	181.2	180.0
C4A	C3A	C2A	H3A	240.7	240.0
C2A	C3A	C4A	H4A	300.8	300.0
C1A	C7A	C5A	C6A	167.3	180.0
C7A	C5A	C6A	H5A	117.7	119.9
C6A	C5A	C4A	O4A	66.3	60.1
C6A	C5A	C4A	H4A	306.5	300.1
O6A	C6A	C5A	H6A1	239.7	240.1
O6A	C6A	C5A	H6A2	120.3	120.0
C5A	C6A	O6A	HOA6	180.0	180.0
H6A1	C6A	C5A	H6A2	240.6	239.9
C1A	C7A	C5A	C4A	43.8	60.0
C5A	C4A	C3A	O3A	180.2	180.0
C3A	C4A	C5A	O4A	121.0	120.0
C5A	C4A	C3A	H3A	300.6	300.0
C3A	C4A	C5A	H4A	240.9	240.0
O4A	C4A	C5A	H4A	119.8	120.0
C5A	C4A	O4A	HOA4	180.0	180.0
C2A	C3A	O3A	C4A	120.9	120.0
O3A	C3A	C2A	H2A	295.5	300.0
C2A	C3A	O3A	H3A	240.4	240.1
O3A	C3A	C4A	O4A	301.6	300.0
C4A	C3A	O3A	H3A	119.5	120.0
O3A	C3A	C4A	H4A	61.2	60.0
C2A	C3A	C4A	O3A	239.7	240.0
C4A	C3A	C2A	H2A	55.6	60.0
C2A	C3A	C4A	H3A	119.3	120.0
C5A	C4A	C3A	O4A	238.6	240.0
C5A	C4A	C3A	H4A	119.0	120.1
O3A	C3A	C4A	H3A	239.6	240.0
C4A	C3A	O3A	HOA3	59.1	60.0
O4A	C4A	C3A	H4A	240.4	240.0
C3A	C4A	O4A	HOA4	57.7	60.0
O6A	C6A	C5A	H5A	179.4	55.1
C5A	C6A	O6A	H6A1	120.3	120.0
C5A	C6A	O6A	H6A2	239.7	240.0
H6A1	C6A	O6A	H6A2	119.4	120.0
C5A	C4A	O4A	H4A	241.1	240.0
O4A	C4A	C3A	O3A	301.6	300.0
O4A	C4A	C3A	H3A	61.9	60.0
C3A	C4A	O4A	H4A	118.8	120.0
C2A	C1A	H1A	C7A	240.4	240.0
H1A	C1A	C7A	C5A	195.2	180.0
H1A	C1A	C7A	H7A1	316.1	299.9
H1A	C1A	C7A	H7A2	74.3	59.9
H1A	C1A	C2A	C3A	173.4	180.0
H1A	C1A	C2A	H2A	54.3	60.0
H2A	C2A	C1A	C7A	296.8	300.0
C1A	C2A	H2A	C3A	119.9	120.0
H2A	C2A	C1A	H1A	54.3	60.0
H2A	C2A	C3A	O3A	295.5	300.0
H2A	C2A	C3A	C4A	55.6	60.0
H2A	C2A	C3A	H3A	174.9	180.1
C2A	C3A	H3A	O3A	120.0	119.9
C2A	C3A	H3A	C4A	239.7	240.0
H3A	C3A	C2A	H2A	174.9	180.1
C4A	C3A	H3A	O3A	240.3	240.0
H3A	C3A	O3A	HOA3	299.7	299.9
H3A	C3A	C4A	O4A	61.9	60.0
H3A	C3A	C4A	H4A	181.5	179.9
C5A	C4A	H4A	O4A	119.9	120.0
H4A	C4A	C3A	O3A	61.2	60.0
C3A	C4A	H4A	O4A	240.8	240.0
H4A	C4A	C3A	H3A	181.5	179.9
H4A	C4A	O4A	HOA4	298.9	300.1
H5A	C5A	C6A	O6A	179.4	55.1
H5A	C5A	C6A	H6A1	299.7	175.0
H5A	C5A	C6A	H6A2	59.1	295.1
H5A	C5A	C4A	O4A	308.4	300.0
H5A	C5A	C4A	H4A	188.6	180.0
C5A	C6A	H6A1	O6A	238.1	240.1
H6A1	C6A	C5A	H5A	299.7	175.0
C5A	C6A	H6A1	H6A2	119.0	120.1
O6A	C6A	H6A1	H6A2	241.0	240.0
H6A1	C6A	O6A	HOA6	59.7	60.0
C5A	C6A	H6A2	O6A	121.9	120.0
H6A2	C6A	C5A	H5A	59.1	295.1
C5A	C6A	H6A2	H6A1	241.0	239.9
O6A	C6A	H6A2	H6A1	119.0	120.0
H6A2	C6A	O6A	HOA6	300.3	300.0
C1A	C7A	H7A1	C5A	234.3	240.1
H7A1	C7A	C1A	H1A	316.1	299.9
C1A	C7A	H7A1	H7A2	117.2	120.0
H7A1	C7A	C5A	H5A	164.3	180.0
C1A	C7A	H7A2	C5A	125.7	120.0
H7A2	C7A	C1A	H1A	74.3	59.9
C1A	C7A	H7A2	H7A1	242.8	240.0
H7A2	C7A	C5A	H5A	46.1	60.0
HOA2	O2A	C2A	H2A	60.2	60.0
HOA3	O3A	C3A	H3A	299.7	299.9
HOA4	O4A	C4A	H4A	298.9	300.1
HOA6	O6A	C6A	H6A1	59.7	60.0
HOA6	O6A	C6A	H6A2	300.3	300.0
C2	C1	H1	O1	116.1	120.1
C2	C1	H1	O5	238.9	240.0
H1	C1	C2	C3	176.0	177.6
H1	C1	C2	H2	56.7	57.7
O5	C1	H1	O1	237.2	240.0
H1	C1	O1	HO1	298.2	300.1
H1	C1	O5	C5	183.5	178.9
H2	C2	C1	O1	176.1	177.7
H2	C2	C1	O5	295.2	297.7
C1	C2	H2	C3	119.8	119.7
H2	C2	C1	H1	56.7	57.7
H2	C2	C3	O3	298.4	303.0
H2	C2	C3	C4	60.1	62.9
H2	C2	C3	H3	177.8	182.9
C2	C3	H3	O3	120.9	120.2
C2	C3	H3	C4	242.3	240.4
H3	C3	C2	H2	177.8	182.9
C4	C3	H3	O3	238.5	239.8
H3	C3	O3	HO3	299.7	60.3
H3	C3	C4	N4	65.4	57.0
H3	C3	C4	H4	186.2	177.1
H4	C4	C3	O3	65.3	56.9
C3	C4	H4	N4	238.2	239.9
H4	C4	C3	H3	186.2	177.1
C5	C4	H4	N4	122.3	120.1
H4	C4	N4	HN41	125.8	142.8
H5	C5	C4	N4	298.1	302.5
H5	C5	C4	H4	177.0	182.4
H5	C5	C6	H62	62.2	173.7
H5	C5	C6	H63	182.2	293.7
H5	C5	C6	H61	302.1	53.7
H62	C6	C5	H5	62.2	173.7
C5	C6	H62	H63	120.0	120.0
C5	C6	H62	H61	240.0	240.0
H63	C6	H62	H61	120.0	120.0
H63	C6	C5	H5	182.2	293.7
C5	C6	H63	H62	240.0	240.0
C5	C6	H63	H61	120.0	120.0
H62	C6	H63	H61	240.0	240.0
H61	C6	C5	H5	302.1	53.7
C5	C6	H61	H62	120.0	120.0
C5	C6	H61	H63	240.0	240.0
H62	C6	H61	H63	120.0	120.0
HN41	N4	C4	H4	125.8	142.8
HN41	N4	C1A	H1A	220.0	265.1
HO2	O2	C2	H2	60.2	299.8
HO3	O3	C3	H3	299.7	60.3
HO1	O1	C1	H1	298.2	300.1