PDB Chemical Component RXR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RXR
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
O1 |
1.271 |
|
N1 |
C2 |
1.457 |
|
N1 |
C5 |
1.458 |
|
C2 |
C3 |
1.506 |
|
C2 |
C8 |
1.523 |
|
C2 |
C9 |
1.524 |
|
C3 |
C4 |
1.330 |
|
C3 |
CE |
1.510 |
|
C4 |
C5 |
1.511 |
|
C4 |
C10 |
1.514 |
|
C5 |
C6 |
1.524 |
|
C5 |
C7 |
1.525 |
|
C6 |
H6 |
1.100 |
|
C6 |
H6A |
1.100 |
|
C6 |
H6B |
1.100 |
|
C7 |
H7 |
1.100 |
|
C7 |
H7A |
1.100 |
|
C7 |
H7B |
1.100 |
|
C8 |
H8 |
1.100 |
|
C8 |
H8A |
1.100 |
|
C8 |
H8B |
1.099 |
|
C9 |
H9 |
1.100 |
|
C9 |
H9A |
1.100 |
|
C9 |
H9B |
1.100 |
|
SD |
CE |
1.769 |
|
SD |
HSD |
1.300 |
|
CE |
HE |
1.100 |
|
CE |
HEA |
1.100 |
|
C10 |
S10 |
1.815 |
|
C10 |
H10 |
1.099 |
|
C10 |
H10A |
1.100 |
|
S10 |
HS10 |
1.300 |
|
Bond Angles for RXR
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
N1 |
C2 |
123.3 |
|
O1 |
N1 |
C5 |
123.3 |
|
C2 |
N1 |
C5 |
113.4 |
|
N1 |
C2 |
C3 |
101.6 |
|
N1 |
C2 |
C8 |
111.5 |
|
N1 |
C2 |
C9 |
112.9 |
|
N1 |
C5 |
C4 |
101.8 |
|
N1 |
C5 |
C6 |
112.1 |
|
N1 |
C5 |
C7 |
111.1 |
|
C3 |
C2 |
C8 |
109.2 |
|
C3 |
C2 |
C9 |
109.8 |
|
C2 |
C3 |
C4 |
111.7 |
|
C2 |
C3 |
CE |
122.5 |
|
C8 |
C2 |
C9 |
111.4 |
|
C2 |
C8 |
H8 |
109.5 |
|
C2 |
C8 |
H8A |
109.5 |
|
C2 |
C8 |
H8B |
109.5 |
|
C2 |
C9 |
H9 |
109.5 |
|
C2 |
C9 |
H9A |
109.4 |
|
C2 |
C9 |
H9B |
109.5 |
|
C4 |
C3 |
CE |
125.8 |
|
C3 |
C4 |
C5 |
111.1 |
|
C3 |
C4 |
C10 |
124.8 |
|
C3 |
CE |
SD |
110.3 |
|
C3 |
CE |
HE |
109.2 |
|
C3 |
CE |
HEA |
109.2 |
|
C5 |
C4 |
C10 |
124.2 |
|
C4 |
C5 |
C6 |
110.2 |
|
C4 |
C5 |
C7 |
110.0 |
|
C4 |
C10 |
S10 |
110.6 |
|
C4 |
C10 |
H10 |
109.1 |
|
C4 |
C10 |
H10A |
109.1 |
|
C6 |
C5 |
C7 |
111.3 |
|
C5 |
C6 |
H6 |
109.5 |
|
C5 |
C6 |
H6A |
109.5 |
|
C5 |
C6 |
H6B |
109.5 |
|
C5 |
C7 |
H7 |
109.5 |
|
C5 |
C7 |
H7A |
109.5 |
|
C5 |
C7 |
H7B |
109.5 |
|
H6 |
C6 |
H6A |
109.5 |
|
H6 |
C6 |
H6B |
109.4 |
|
H6A |
C6 |
H6B |
109.5 |
|
H7 |
C7 |
H7A |
109.5 |
|
H7 |
C7 |
H7B |
109.4 |
|
H7A |
C7 |
H7B |
109.5 |
|
H8 |
C8 |
H8A |
109.5 |
|
H8 |
C8 |
H8B |
109.4 |
|
H8A |
C8 |
H8B |
109.5 |
|
H9 |
C9 |
H9A |
109.5 |
|
H9 |
C9 |
H9B |
109.4 |
|
H9A |
C9 |
H9B |
109.5 |
|
CE |
SD |
HSD |
102.0 |
|
SD |
CE |
HE |
109.2 |
|
SD |
CE |
HEA |
109.2 |
|
HE |
CE |
HEA |
109.7 |
|
S10 |
C10 |
H10 |
109.1 |
|
S10 |
C10 |
H10A |
109.1 |
|
C10 |
S10 |
HS10 |
102.0 |
|
H10 |
C10 |
H10A |
109.9 |
|
Torsion Angles for RXR
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
O1 |
C5 |
179.9 |
|
O1 |
N1 |
C2 |
C3 |
175.8 |
|
O1 |
N1 |
C2 |
C8 |
292.0 |
|
O1 |
N1 |
C2 |
C9 |
58.3 |
|
O1 |
N1 |
C5 |
C4 |
180.5 |
|
O1 |
N1 |
C5 |
C6 |
62.8 |
|
O1 |
N1 |
C5 |
C7 |
297.5 |
|
O1 |
N1 |
C2 |
C5 |
180.1 |
|
C2 |
N1 |
C5 |
C4 |
0.6 |
|
C2 |
N1 |
C5 |
C6 |
242.9 |
|
C2 |
N1 |
C5 |
C7 |
117.6 |
|
C3 |
C2 |
N1 |
C8 |
243.8 |
|
C3 |
C2 |
N1 |
C9 |
117.5 |
|
N1 |
C2 |
C3 |
C4 |
6.9 |
|
N1 |
C2 |
C3 |
CE |
187.9 |
|
C8 |
C2 |
N1 |
C9 |
233.7 |
|
N1 |
C2 |
C8 |
H8 |
180.0 |
|
N1 |
C2 |
C8 |
H8A |
300.0 |
|
N1 |
C2 |
C8 |
H8B |
60.0 |
|
N1 |
C2 |
C9 |
H9 |
180.0 |
|
N1 |
C2 |
C9 |
H9A |
300.0 |
|
N1 |
C2 |
C9 |
H9B |
60.0 |
|
O1 |
N1 |
C5 |
C2 |
179.9 |
|
C5 |
N1 |
C2 |
C3 |
355.8 |
|
C5 |
N1 |
C2 |
C8 |
111.9 |
|
C5 |
N1 |
C2 |
C9 |
238.3 |
|
C3 |
C4 |
C5 |
N1 |
4.0 |
|
N1 |
C5 |
C4 |
C10 |
184.9 |
|
C4 |
C5 |
N1 |
C6 |
117.7 |
|
C4 |
C5 |
N1 |
C7 |
243.0 |
|
C6 |
C5 |
N1 |
C7 |
125.3 |
|
N1 |
C5 |
C6 |
H6 |
180.0 |
|
N1 |
C5 |
C6 |
H6A |
300.0 |
|
N1 |
C5 |
C6 |
H6B |
60.0 |
|
N1 |
C5 |
C7 |
H7 |
180.0 |
|
N1 |
C5 |
C7 |
H7A |
300.0 |
|
N1 |
C5 |
C7 |
H7B |
60.0 |
|
C3 |
C2 |
N1 |
C5 |
355.8 |
|
N1 |
C2 |
C3 |
C8 |
117.9 |
|
N1 |
C2 |
C3 |
C9 |
240.2 |
|
C8 |
C2 |
C3 |
C9 |
122.4 |
|
C3 |
C2 |
C8 |
H8 |
291.4 |
|
C3 |
C2 |
C8 |
H8A |
51.4 |
|
C3 |
C2 |
C8 |
H8B |
171.4 |
|
C3 |
C2 |
C9 |
H9 |
67.4 |
|
C3 |
C2 |
C9 |
H9A |
187.5 |
|
C3 |
C2 |
C9 |
H9B |
307.5 |
|
C4 |
C3 |
C2 |
CE |
179.0 |
|
C2 |
C3 |
C4 |
C5 |
352.9 |
|
C2 |
C3 |
C4 |
C10 |
172.1 |
|
C2 |
C3 |
CE |
SD |
104.5 |
|
C2 |
C3 |
CE |
HE |
224.5 |
|
C2 |
C3 |
CE |
HEA |
344.5 |
|
C8 |
C2 |
N1 |
C5 |
111.9 |
|
N1 |
C2 |
C8 |
C3 |
248.6 |
|
N1 |
C2 |
C8 |
C9 |
127.2 |
|
C3 |
C2 |
C8 |
C9 |
238.6 |
|
C8 |
C2 |
C3 |
C4 |
249.0 |
|
C8 |
C2 |
C3 |
CE |
70.0 |
|
C8 |
C2 |
C9 |
H9 |
306.4 |
|
C8 |
C2 |
C9 |
H9A |
66.4 |
|
C8 |
C2 |
C9 |
H9B |
186.4 |
|
H8 |
C8 |
C2 |
H8A |
240.0 |
|
H8 |
C8 |
C2 |
H8B |
120.0 |
|
H8A |
C8 |
C2 |
H8B |
240.0 |
|
C9 |
C2 |
N1 |
C5 |
238.3 |
|
N1 |
C2 |
C9 |
C3 |
112.5 |
|
N1 |
C2 |
C9 |
C8 |
233.6 |
|
C3 |
C2 |
C9 |
C8 |
121.1 |
|
C9 |
C2 |
C3 |
C4 |
126.7 |
|
C9 |
C2 |
C3 |
CE |
307.7 |
|
C9 |
C2 |
C8 |
H8 |
52.8 |
|
C9 |
C2 |
C8 |
H8A |
172.8 |
|
C9 |
C2 |
C8 |
H8B |
292.8 |
|
H9 |
C9 |
C2 |
H9A |
240.0 |
|
H9 |
C9 |
C2 |
H9B |
120.0 |
|
H9A |
C9 |
C2 |
H9B |
240.0 |
|
N1 |
C5 |
C4 |
C3 |
4.0 |
|
C4 |
C3 |
C2 |
C8 |
249.0 |
|
C4 |
C3 |
C2 |
C9 |
126.7 |
|
C2 |
C3 |
C4 |
CE |
181.1 |
|
C4 |
C3 |
CE |
SD |
285.7 |
|
C4 |
C3 |
CE |
HE |
45.7 |
|
C4 |
C3 |
CE |
HEA |
165.6 |
|
C5 |
C4 |
C3 |
C10 |
180.9 |
|
C3 |
C4 |
C5 |
C6 |
123.1 |
|
C3 |
C4 |
C5 |
C7 |
246.1 |
|
C3 |
C4 |
C10 |
S10 |
269.4 |
|
C3 |
C4 |
C10 |
H10 |
29.4 |
|
C3 |
C4 |
C10 |
H10A |
149.5 |
|
CE |
C3 |
C2 |
C8 |
70.0 |
|
CE |
C3 |
C2 |
C9 |
307.7 |
|
C2 |
C3 |
CE |
C4 |
178.8 |
|
CE |
C3 |
C4 |
C5 |
171.9 |
|
CE |
C3 |
C4 |
C10 |
351.0 |
|
C3 |
CE |
SD |
HSD |
180.0 |
|
SD |
CE |
C3 |
HE |
240.0 |
|
SD |
CE |
C3 |
HEA |
120.0 |
|
HE |
CE |
C3 |
HEA |
240.0 |
|
N1 |
C5 |
C4 |
C6 |
240.9 |
|
N1 |
C5 |
C4 |
C7 |
117.9 |
|
C5 |
C4 |
C3 |
CE |
171.9 |
|
C3 |
C4 |
C5 |
C10 |
179.1 |
|
C5 |
C4 |
C10 |
S10 |
88.5 |
|
C5 |
C4 |
C10 |
H10 |
208.4 |
|
C5 |
C4 |
C10 |
H10A |
328.5 |
|
C6 |
C5 |
C4 |
C7 |
237.0 |
|
C4 |
C5 |
C6 |
H6 |
67.4 |
|
C4 |
C5 |
C6 |
H6A |
187.4 |
|
C4 |
C5 |
C6 |
H6B |
307.4 |
|
C4 |
C5 |
C7 |
H7 |
291.9 |
|
C4 |
C5 |
C7 |
H7A |
51.9 |
|
C4 |
C5 |
C7 |
H7B |
171.9 |
|
C10 |
C4 |
C3 |
CE |
351.0 |
|
C3 |
C4 |
C10 |
C5 |
181.0 |
|
C10 |
C4 |
C5 |
C6 |
304.0 |
|
C10 |
C4 |
C5 |
C7 |
67.0 |
|
S10 |
C10 |
C4 |
H10 |
240.0 |
|
S10 |
C10 |
C4 |
H10A |
120.0 |
|
C4 |
C10 |
S10 |
HS10 |
180.0 |
|
H10 |
C10 |
C4 |
H10A |
240.0 |
|
N1 |
C5 |
C6 |
C4 |
112.6 |
|
N1 |
C5 |
C6 |
C7 |
234.8 |
|
C6 |
C5 |
C4 |
C10 |
304.0 |
|
C4 |
C5 |
C6 |
C7 |
122.2 |
|
C6 |
C5 |
C7 |
H7 |
54.3 |
|
C6 |
C5 |
C7 |
H7A |
174.3 |
|
C6 |
C5 |
C7 |
H7B |
294.3 |
|
H6 |
C6 |
C5 |
H6A |
240.0 |
|
H6 |
C6 |
C5 |
H6B |
120.0 |
|
H6A |
C6 |
C5 |
H6B |
240.0 |
|
N1 |
C5 |
C7 |
C4 |
248.1 |
|
N1 |
C5 |
C7 |
C6 |
125.7 |
|
C7 |
C5 |
C4 |
C10 |
67.0 |
|
C4 |
C5 |
C7 |
C6 |
237.7 |
|
C7 |
C5 |
C6 |
H6 |
305.2 |
|
C7 |
C5 |
C6 |
H6A |
65.2 |
|
C7 |
C5 |
C6 |
H6B |
185.2 |
|
H7 |
C7 |
C5 |
H7A |
240.0 |
|
H7 |
C7 |
C5 |
H7B |
120.0 |
|
H7A |
C7 |
C5 |
H7B |
240.0 |
|
H6 |
C6 |
C5 |
C7 |
305.2 |
|
C5 |
C6 |
H6 |
H6A |
120.0 |
|
C5 |
C6 |
H6 |
H6B |
240.0 |
|
H6A |
C6 |
H6 |
H6B |
120.0 |
|
H6A |
C6 |
C5 |
C7 |
65.2 |
|
C5 |
C6 |
H6A |
H6 |
240.0 |
|
C5 |
C6 |
H6A |
H6B |
120.0 |
|
H6 |
C6 |
H6A |
H6B |
240.0 |
|
H6B |
C6 |
C5 |
C7 |
185.2 |
|
C5 |
C6 |
H6B |
H6 |
120.0 |
|
C5 |
C6 |
H6B |
H6A |
240.0 |
|
H6 |
C6 |
H6B |
H6A |
120.0 |
|
C5 |
C7 |
H7 |
H7A |
120.0 |
|
C5 |
C7 |
H7 |
H7B |
240.0 |
|
H7A |
C7 |
H7 |
H7B |
120.0 |
|
C5 |
C7 |
H7A |
H7 |
239.9 |
|
C5 |
C7 |
H7A |
H7B |
120.0 |
|
H7 |
C7 |
H7A |
H7B |
240.0 |
|
C5 |
C7 |
H7B |
H7 |
120.0 |
|
C5 |
C7 |
H7B |
H7A |
240.0 |
|
H7 |
C7 |
H7B |
H7A |
120.0 |
|
H8 |
C8 |
C2 |
C9 |
52.8 |
|
C2 |
C8 |
H8 |
H8A |
120.0 |
|
C2 |
C8 |
H8 |
H8B |
240.0 |
|
H8A |
C8 |
H8 |
H8B |
120.0 |
|
H8A |
C8 |
C2 |
C9 |
172.8 |
|
C2 |
C8 |
H8A |
H8 |
240.0 |
|
C2 |
C8 |
H8A |
H8B |
120.0 |
|
H8 |
C8 |
H8A |
H8B |
240.0 |
|
H8B |
C8 |
C2 |
C9 |
292.8 |
|
C2 |
C8 |
H8B |
H8 |
120.0 |
|
C2 |
C8 |
H8B |
H8A |
240.0 |
|
H8 |
C8 |
H8B |
H8A |
120.0 |
|
C2 |
C9 |
H9 |
H9A |
120.0 |
|
C2 |
C9 |
H9 |
H9B |
240.0 |
|
H9A |
C9 |
H9 |
H9B |
120.0 |
|
C2 |
C9 |
H9A |
H9 |
240.0 |
|
C2 |
C9 |
H9A |
H9B |
120.0 |
|
H9 |
C9 |
H9A |
H9B |
240.0 |
|
C2 |
C9 |
H9B |
H9 |
120.0 |
|
C2 |
C9 |
H9B |
H9A |
240.0 |
|
H9 |
C9 |
H9B |
H9A |
120.0 |
|
C3 |
CE |
SD |
HE |
120.0 |
|
C3 |
CE |
SD |
HEA |
240.0 |
|
HE |
CE |
SD |
HEA |
120.0 |
|
HSD |
SD |
CE |
HE |
60.0 |
|
HSD |
SD |
CE |
HEA |
300.0 |
|
C3 |
CE |
HE |
SD |
239.3 |
|
C3 |
CE |
HE |
HEA |
119.7 |
|
HE |
CE |
SD |
HSD |
60.0 |
|
SD |
CE |
HE |
HEA |
240.3 |
|
C3 |
CE |
HEA |
SD |
120.7 |
|
C3 |
CE |
HEA |
HE |
240.3 |
|
HEA |
CE |
SD |
HSD |
300.0 |
|
SD |
CE |
HEA |
HE |
119.7 |
|
C4 |
C10 |
S10 |
H10 |
120.0 |
|
C4 |
C10 |
S10 |
H10A |
240.0 |
|
H10 |
C10 |
S10 |
H10A |
120.0 |
|
C4 |
C10 |
H10 |
S10 |
239.1 |
|
C4 |
C10 |
H10 |
H10A |
119.5 |
|
S10 |
C10 |
H10 |
H10A |
240.5 |
|
H10 |
C10 |
S10 |
HS10 |
60.0 |
|
C4 |
C10 |
H10A |
S10 |
120.9 |
|
C4 |
C10 |
H10A |
H10 |
240.5 |
|
S10 |
C10 |
H10A |
H10 |
119.5 |
|
H10A |
C10 |
S10 |
HS10 |
300.0 |
|
HS10 |
S10 |
C10 |
H10 |
60.0 |
|
HS10 |
S10 |
C10 |
H10A |
300.0 |
|