PDB Chemical Component RXR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RXR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 O1 1.271  
N1 C2 1.457  
N1 C5 1.458  
C2 C3 1.506  
C2 C8 1.523  
C2 C9 1.524  
C3 C4 1.330  
C3 CE 1.510  
C4 C5 1.511  
C4 C10 1.514  
C5 C6 1.524  
C5 C7 1.525  
C6 H6 1.100  
C6 H6A 1.100  
C6 H6B 1.100  
C7 H7 1.100  
C7 H7A 1.100  
C7 H7B 1.100  
C8 H8 1.100  
C8 H8A 1.100  
C8 H8B 1.099  
C9 H9 1.100  
C9 H9A 1.100  
C9 H9B 1.100  
SD CE 1.769  
SD HSD 1.300  
CE HE 1.100  
CE HEA 1.100  
C10 S10 1.815  
C10 H10 1.099  
C10 H10A 1.100  
S10 HS10 1.300  

Bond Angles for RXR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 N1 C2 123.3  
O1 N1 C5 123.3  
C2 N1 C5 113.4  
N1 C2 C3 101.6  
N1 C2 C8 111.5  
N1 C2 C9 112.9  
N1 C5 C4 101.8  
N1 C5 C6 112.1  
N1 C5 C7 111.1  
C3 C2 C8 109.2  
C3 C2 C9 109.8  
C2 C3 C4 111.7  
C2 C3 CE 122.5  
C8 C2 C9 111.4  
C2 C8 H8 109.5  
C2 C8 H8A 109.5  
C2 C8 H8B 109.5  
C2 C9 H9 109.5  
C2 C9 H9A 109.4  
C2 C9 H9B 109.5  
C4 C3 CE 125.8  
C3 C4 C5 111.1  
C3 C4 C10 124.8  
C3 CE SD 110.3  
C3 CE HE 109.2  
C3 CE HEA 109.2  
C5 C4 C10 124.2  
C4 C5 C6 110.2  
C4 C5 C7 110.0  
C4 C10 S10 110.6  
C4 C10 H10 109.1  
C4 C10 H10A 109.1  
C6 C5 C7 111.3  
C5 C6 H6 109.5  
C5 C6 H6A 109.5  
C5 C6 H6B 109.5  
C5 C7 H7 109.5  
C5 C7 H7A 109.5  
C5 C7 H7B 109.5  
H6 C6 H6A 109.5  
H6 C6 H6B 109.4  
H6A C6 H6B 109.5  
H7 C7 H7A 109.5  
H7 C7 H7B 109.4  
H7A C7 H7B 109.5  
H8 C8 H8A 109.5  
H8 C8 H8B 109.4  
H8A C8 H8B 109.5  
H9 C9 H9A 109.5  
H9 C9 H9B 109.4  
H9A C9 H9B 109.5  
CE SD HSD 102.0  
SD CE HE 109.2  
SD CE HEA 109.2  
HE CE HEA 109.7  
S10 C10 H10 109.1  
S10 C10 H10A 109.1  
C10 S10 HS10 102.0  
H10 C10 H10A 109.9  

Torsion Angles for RXR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 O1 C5 179.9  
O1 N1 C2 C3 175.8  
O1 N1 C2 C8 292.0  
O1 N1 C2 C9 58.3  
O1 N1 C5 C4 180.5  
O1 N1 C5 C6 62.8  
O1 N1 C5 C7 297.5  
O1 N1 C2 C5 180.1  
C2 N1 C5 C4 0.6  
C2 N1 C5 C6 242.9  
C2 N1 C5 C7 117.6  
C3 C2 N1 C8 243.8  
C3 C2 N1 C9 117.5  
N1 C2 C3 C4 6.9  
N1 C2 C3 CE 187.9  
C8 C2 N1 C9 233.7  
N1 C2 C8 H8 180.0  
N1 C2 C8 H8A 300.0  
N1 C2 C8 H8B 60.0  
N1 C2 C9 H9 180.0  
N1 C2 C9 H9A 300.0  
N1 C2 C9 H9B 60.0  
O1 N1 C5 C2 179.9  
C5 N1 C2 C3 355.8  
C5 N1 C2 C8 111.9  
C5 N1 C2 C9 238.3  
C3 C4 C5 N1 4.0  
N1 C5 C4 C10 184.9  
C4 C5 N1 C6 117.7  
C4 C5 N1 C7 243.0  
C6 C5 N1 C7 125.3  
N1 C5 C6 H6 180.0  
N1 C5 C6 H6A 300.0  
N1 C5 C6 H6B 60.0  
N1 C5 C7 H7 180.0  
N1 C5 C7 H7A 300.0  
N1 C5 C7 H7B 60.0  
C3 C2 N1 C5 355.8  
N1 C2 C3 C8 117.9  
N1 C2 C3 C9 240.2  
C8 C2 C3 C9 122.4  
C3 C2 C8 H8 291.4  
C3 C2 C8 H8A 51.4  
C3 C2 C8 H8B 171.4  
C3 C2 C9 H9 67.4  
C3 C2 C9 H9A 187.5  
C3 C2 C9 H9B 307.5  
C4 C3 C2 CE 179.0  
C2 C3 C4 C5 352.9  
C2 C3 C4 C10 172.1  
C2 C3 CE SD 104.5  
C2 C3 CE HE 224.5  
C2 C3 CE HEA 344.5  
C8 C2 N1 C5 111.9  
N1 C2 C8 C3 248.6  
N1 C2 C8 C9 127.2  
C3 C2 C8 C9 238.6  
C8 C2 C3 C4 249.0  
C8 C2 C3 CE 70.0  
C8 C2 C9 H9 306.4  
C8 C2 C9 H9A 66.4  
C8 C2 C9 H9B 186.4  
H8 C8 C2 H8A 240.0  
H8 C8 C2 H8B 120.0  
H8A C8 C2 H8B 240.0  
C9 C2 N1 C5 238.3  
N1 C2 C9 C3 112.5  
N1 C2 C9 C8 233.6  
C3 C2 C9 C8 121.1  
C9 C2 C3 C4 126.7  
C9 C2 C3 CE 307.7  
C9 C2 C8 H8 52.8  
C9 C2 C8 H8A 172.8  
C9 C2 C8 H8B 292.8  
H9 C9 C2 H9A 240.0  
H9 C9 C2 H9B 120.0  
H9A C9 C2 H9B 240.0  
N1 C5 C4 C3 4.0  
C4 C3 C2 C8 249.0  
C4 C3 C2 C9 126.7  
C2 C3 C4 CE 181.1  
C4 C3 CE SD 285.7  
C4 C3 CE HE 45.7  
C4 C3 CE HEA 165.6  
C5 C4 C3 C10 180.9  
C3 C4 C5 C6 123.1  
C3 C4 C5 C7 246.1  
C3 C4 C10 S10 269.4  
C3 C4 C10 H10 29.4  
C3 C4 C10 H10A 149.5  
CE C3 C2 C8 70.0  
CE C3 C2 C9 307.7  
C2 C3 CE C4 178.8  
CE C3 C4 C5 171.9  
CE C3 C4 C10 351.0  
C3 CE SD HSD 180.0  
SD CE C3 HE 240.0  
SD CE C3 HEA 120.0  
HE CE C3 HEA 240.0  
N1 C5 C4 C6 240.9  
N1 C5 C4 C7 117.9  
C5 C4 C3 CE 171.9  
C3 C4 C5 C10 179.1  
C5 C4 C10 S10 88.5  
C5 C4 C10 H10 208.4  
C5 C4 C10 H10A 328.5  
C6 C5 C4 C7 237.0  
C4 C5 C6 H6 67.4  
C4 C5 C6 H6A 187.4  
C4 C5 C6 H6B 307.4  
C4 C5 C7 H7 291.9  
C4 C5 C7 H7A 51.9  
C4 C5 C7 H7B 171.9  
C10 C4 C3 CE 351.0  
C3 C4 C10 C5 181.0  
C10 C4 C5 C6 304.0  
C10 C4 C5 C7 67.0  
S10 C10 C4 H10 240.0  
S10 C10 C4 H10A 120.0  
C4 C10 S10 HS10 180.0  
H10 C10 C4 H10A 240.0  
N1 C5 C6 C4 112.6  
N1 C5 C6 C7 234.8  
C6 C5 C4 C10 304.0  
C4 C5 C6 C7 122.2  
C6 C5 C7 H7 54.3  
C6 C5 C7 H7A 174.3  
C6 C5 C7 H7B 294.3  
H6 C6 C5 H6A 240.0  
H6 C6 C5 H6B 120.0  
H6A C6 C5 H6B 240.0  
N1 C5 C7 C4 248.1  
N1 C5 C7 C6 125.7  
C7 C5 C4 C10 67.0  
C4 C5 C7 C6 237.7  
C7 C5 C6 H6 305.2  
C7 C5 C6 H6A 65.2  
C7 C5 C6 H6B 185.2  
H7 C7 C5 H7A 240.0  
H7 C7 C5 H7B 120.0  
H7A C7 C5 H7B 240.0  
H6 C6 C5 C7 305.2  
C5 C6 H6 H6A 120.0  
C5 C6 H6 H6B 240.0  
H6A C6 H6 H6B 120.0  
H6A C6 C5 C7 65.2  
C5 C6 H6A H6 240.0  
C5 C6 H6A H6B 120.0  
H6 C6 H6A H6B 240.0  
H6B C6 C5 C7 185.2  
C5 C6 H6B H6 120.0  
C5 C6 H6B H6A 240.0  
H6 C6 H6B H6A 120.0  
C5 C7 H7 H7A 120.0  
C5 C7 H7 H7B 240.0  
H7A C7 H7 H7B 120.0  
C5 C7 H7A H7 239.9  
C5 C7 H7A H7B 120.0  
H7 C7 H7A H7B 240.0  
C5 C7 H7B H7 120.0  
C5 C7 H7B H7A 240.0  
H7 C7 H7B H7A 120.0  
H8 C8 C2 C9 52.8  
C2 C8 H8 H8A 120.0  
C2 C8 H8 H8B 240.0  
H8A C8 H8 H8B 120.0  
H8A C8 C2 C9 172.8  
C2 C8 H8A H8 240.0  
C2 C8 H8A H8B 120.0  
H8 C8 H8A H8B 240.0  
H8B C8 C2 C9 292.8  
C2 C8 H8B H8 120.0  
C2 C8 H8B H8A 240.0  
H8 C8 H8B H8A 120.0  
C2 C9 H9 H9A 120.0  
C2 C9 H9 H9B 240.0  
H9A C9 H9 H9B 120.0  
C2 C9 H9A H9 240.0  
C2 C9 H9A H9B 120.0  
H9 C9 H9A H9B 240.0  
C2 C9 H9B H9 120.0  
C2 C9 H9B H9A 240.0  
H9 C9 H9B H9A 120.0  
C3 CE SD HE 120.0  
C3 CE SD HEA 240.0  
HE CE SD HEA 120.0  
HSD SD CE HE 60.0  
HSD SD CE HEA 300.0  
C3 CE HE SD 239.3  
C3 CE HE HEA 119.7  
HE CE SD HSD 60.0  
SD CE HE HEA 240.3  
C3 CE HEA SD 120.7  
C3 CE HEA HE 240.3  
HEA CE SD HSD 300.0  
SD CE HEA HE 119.7  
C4 C10 S10 H10 120.0  
C4 C10 S10 H10A 240.0  
H10 C10 S10 H10A 120.0  
C4 C10 H10 S10 239.1  
C4 C10 H10 H10A 119.5  
S10 C10 H10 H10A 240.5  
H10 C10 S10 HS10 60.0  
C4 C10 H10A S10 120.9  
C4 C10 H10A H10 240.5  
S10 C10 H10A H10 119.5  
H10A C10 S10 HS10 300.0  
HS10 S10 C10 H10 60.0  
HS10 S10 C10 H10A 300.0