PDB Chemical Component RWJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RWJ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C51 C52 1.473 1.539
C51 C55 1.474 1.542
C51 CP 1.513 1.507
C51 H511 1.114 1.091
C52 C53 1.509 1.542
C52 H521 1.115 1.091
C52 H522 1.115 1.090
C53 C54 1.548 1.549
C53 H531 1.114 1.090
C53 H532 1.115 1.089
C54 C55 1.513 1.549
C54 H541 1.115 1.090
C54 H542 1.116 1.090
C55 H551 1.116 1.090
C55 H552 1.115 1.090
CP OP 1.229 1.212
CP N 1.329 1.348
N CA 1.469 1.465
N H1N 1.021 0.970
CA CB 1.529 1.529
CA C 1.529 1.506
CA HA1 1.114 1.088
CB CG 1.505 1.529
CB HB1 1.116 1.090
CB HB2 1.116 1.089
CG CD 1.533 1.530
CG HG1 1.115 1.090
CG HG2 1.114 1.090
CD NE 1.460 1.465
CD HD1 1.116 1.090
CD HD2 1.115 1.090
NE CZ 1.331 1.374
NE HE1 1.020 0.970
CZ NH1 1.325 1.303
CZ NH2 1.327 1.375
NH1 HN11 1.020 0.970
NH2 HN21 1.020 0.969
NH2 HN22 1.020 0.970
O C 1.418 1.213
N5 C5 1.374 1.316
N5 C61 1.361 1.335
C5 S5 1.708 1.788
C5 C 1.538 1.471
S5 C62 1.759 1.776
C61 C62 1.434 1.419
C61 C66 1.397 1.419
C62 C63 1.389 1.375
C63 C64 1.396 1.380
C63 H631 1.103 1.080
C64 C65 1.397 1.390
C64 H641 1.103 1.080
C65 C66 1.405 1.357
C65 H651 1.103 1.080
C66 H661 1.104 1.080

Bond Angles for RWJ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C52 C51 C55 112.8 106.6
C52 C51 CP 119.5 110.0
C52 C51 H511 103.7 110.0
C51 C52 C53 106.1 106.6
C51 C52 H521 113.5 110.0
C51 C52 H522 113.5 110.0
C55 C51 CP 119.4 110.1
C55 C51 H511 103.8 110.1
C51 C55 C54 106.1 104.2
C51 C55 H551 113.5 110.5
C51 C55 H552 113.5 110.5
CP C51 H511 92.0 110.0
C51 CP OP 121.1 120.0
C51 CP N 116.5 120.0
C53 C52 H521 113.5 110.0
C53 C52 H522 113.4 110.1
C52 C53 C54 107.6 104.2
C52 C53 H531 112.9 110.5
C52 C53 H532 112.9 110.5
H521 C52 H522 97.0 110.1
C54 C53 H531 112.9 110.4
C54 C53 H532 112.9 110.5
C53 C54 C55 107.4 102.7
C53 C54 H541 113.0 110.8
C53 C54 H542 113.0 110.7
H531 C53 H532 97.6 110.6
C55 C54 H541 113.0 110.8
C55 C54 H542 113.0 110.7
C54 C55 H551 113.5 110.5
C54 C55 H552 113.5 110.5
H541 C54 H542 97.4 110.8
H551 C55 H552 97.0 110.6
OP CP N 122.4 120.0
CP N CA 122.9 120.0
CP N H1N 113.3 120.0
CA N H1N 123.8 120.0
N CA CB 107.6 109.4
N CA C 109.9 109.5
N CA HA1 110.2 109.4
CB CA C 108.8 109.5
CB CA HA1 111.3 109.5
CA CB CG 118.8 109.5
CA CB HB1 108.8 109.4
CA CB HB2 108.9 109.5
C CA HA1 109.0 109.5
CA C O 109.6 120.0
CA C C5 110.5 120.0
CG CB HB1 108.9 109.4
CG CB HB2 108.8 109.5
CB CG CD 108.6 109.5
CB CG HG1 112.5 109.5
CB CG HG2 112.5 109.5
HB1 CB HB2 101.1 109.5
CD CG HG1 112.5 109.5
CD CG HG2 112.5 109.4
CG CD NE 111.3 109.5
CG CD HD1 111.5 109.5
CG CD HD2 111.5 109.4
HG1 CG HG2 98.0 109.4
NE CD HD1 111.5 109.5
NE CD HD2 111.5 109.4
CD NE CZ 125.4 120.0
CD NE HE1 106.6 120.0
HD1 CD HD2 98.8 109.4
CZ NE HE1 106.6 120.0
NE CZ NH1 121.1 120.0
NE CZ NH2 119.3 120.0
NH1 CZ NH2 119.7 119.9
CZ NH1 HN11 109.5 120.0
CZ NH2 HN21 119.2 120.1
CZ NH2 HN22 108.7 120.0
HN21 NH2 HN22 108.7 120.0
O C C5 110.0 120.0
C5 N5 C61 114.5 122.8
N5 C5 S5 112.2 102.2
N5 C5 C 123.2 128.9
N5 C61 C62 112.8 115.8
N5 C61 C66 128.6 128.2
S5 C5 C 124.5 128.9
C5 S5 C62 91.7 97.1
S5 C62 C61 108.9 102.2
S5 C62 C63 131.1 135.3
C62 C61 C66 118.6 116.0
C61 C62 C63 120.0 122.5
C61 C66 C65 120.8 120.8
C61 C66 H661 119.3 119.6
C62 C63 C64 120.5 119.5
C62 C63 H631 119.5 120.2
C64 C63 H631 120.0 120.3
C63 C64 C65 120.1 119.4
C63 C64 H641 119.9 120.3
C65 C64 H641 119.9 120.3
C64 C65 C66 119.9 121.8
C64 C65 H651 119.8 119.1
C66 C65 H651 120.3 119.1
C65 C66 H661 119.9 119.6

Torsion Angles for RWJ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C55 C51 C52 CP 211.9 240.7
C55 C51 C52 H511 111.6 119.4
C52 C51 C55 C54 357.6 336.4
C52 C51 C55 H551 122.8 95.0
C52 C51 C55 H552 232.3 217.7
CP C51 C52 H511 259.7 238.7
C52 C51 CP OP 34.0 360.0
C52 C51 CP N 214.4 180.0
C53 C52 C51 H521 234.7 240.7
C53 C52 C51 H522 125.2 119.3
C51 C52 C53 C54 0.9 23.6
C51 C52 C53 H531 126.1 142.3
C51 C52 C53 H532 235.6 264.9
H521 C52 C51 H522 250.5 238.6
C52 C51 C55 CP 148.1 119.3
C52 C51 C55 H511 248.4 240.7
C55 C51 C52 C53 1.0 360.0
C55 C51 C52 H521 126.3 119.3
C55 C51 C52 H522 235.8 240.7
CP C51 C55 H511 100.3 121.4
C55 C51 CP OP 180.0 117.2
C55 C51 CP N 0.5 297.2
C53 C54 C55 C51 2.8 38.0
C51 C55 C54 H541 237.5 279.6
C51 C55 C54 H542 128.1 156.2
C54 C55 C51 H551 234.7 241.4
C54 C55 C51 H552 125.3 118.7
H551 C55 C51 H552 250.5 237.3
C52 C51 CP C55 214.0 242.8
C52 C51 CP H511 107.0 121.4
CP C51 C52 C53 149.1 119.3
CP C51 C52 H521 274.4 238.6
CP C51 C52 H522 23.9 360.0
C55 C51 CP H511 253.0 238.5
CP C51 C55 C54 209.4 217.1
CP C51 C55 H551 334.7 335.7
CP C51 C55 H552 84.2 98.4
OP CP C51 N 179.6 180.0
C51 CP N CA 182.5 180.0
C51 CP N H1N 2.5 360.0
C52 C51 H511 C55 118.1 117.2
C52 C51 H511 CP 239.0 238.6
H511 C51 C52 C53 249.4 240.6
H511 C51 C52 H521 14.6 359.9
H511 C51 C52 H522 124.1 121.3
C55 C51 H511 CP 120.9 121.4
H511 C51 C55 C54 109.2 95.7
H511 C51 C55 H551 234.4 214.3
H511 C51 C55 H552 343.9 337.0
H511 C51 CP OP 287.1 238.6
H511 C51 CP N 107.5 58.7
C53 C52 C51 C55 1.0 360.0
C53 C52 C51 CP 149.1 119.3
C53 C52 C51 H511 249.4 240.6
C51 C52 C53 H521 125.3 119.3
C51 C52 C53 H522 234.7 240.7
H521 C52 C53 H522 109.5 121.5
C54 C53 C52 H531 234.7 241.4
C54 C53 C52 H532 125.2 118.7
C52 C53 C54 C55 357.7 322.0
C52 C53 C54 H541 123.0 80.4
C52 C53 C54 H542 232.4 203.8
H531 C53 C52 H532 250.5 237.3
H521 C52 C51 C55 126.3 119.3
H521 C52 C51 CP 274.4 238.6
H521 C52 C51 H511 14.6 359.9
C51 C52 H521 C53 238.8 242.8
C51 C52 H521 H522 119.4 121.3
C53 C52 H521 H522 240.6 238.5
H521 C52 C53 C54 235.6 264.4
H521 C52 C53 H531 0.8 23.0
H521 C52 C53 H532 110.3 145.7
H522 C52 C51 C55 235.8 240.7
H522 C52 C51 CP 23.9 360.0
H522 C52 C51 H511 124.1 121.3
C51 C52 H522 C53 121.2 117.2
C51 C52 H522 H521 240.6 238.7
C53 C52 H522 H521 119.4 121.5
H522 C52 C53 C54 126.1 142.9
H522 C52 C53 H531 251.4 261.5
H522 C52 C53 H532 0.9 24.2
C51 C55 C54 C53 2.8 38.0
C54 C53 C52 H521 235.6 264.4
C54 C53 C52 H522 126.1 142.9
C52 C53 C54 H531 125.3 118.7
C52 C53 C54 H532 234.8 241.3
H531 C53 C54 H532 109.5 122.6
C55 C54 C53 H541 234.7 241.6
C55 C54 C53 H542 125.3 118.3
C53 C54 C55 H551 237.6 279.3
C53 C54 C55 H552 128.1 156.7
H541 C54 C53 H542 250.6 236.6
H531 C53 C52 H521 0.8 23.0
H531 C53 C52 H522 251.4 261.5
C52 C53 H531 C54 237.7 245.3
C52 C53 H531 H532 118.9 122.6
C54 C53 H531 H532 241.2 237.4
H531 C53 C54 C55 232.4 203.4
H531 C53 C54 H541 357.7 321.7
H531 C53 C54 H542 107.1 85.1
H532 C53 C52 H521 110.3 145.7
H532 C53 C52 H522 0.9 24.2
C52 C53 H532 C54 122.3 114.8
C52 C53 H532 H531 241.1 237.4
C54 C53 H532 H531 118.8 122.6
H532 C53 C54 C55 122.9 80.7
H532 C53 C54 H541 248.2 199.1
H532 C53 C54 H542 357.6 322.5
C54 C55 C51 CP 209.4 217.1
C54 C55 C51 H511 109.2 95.7
C51 C55 C54 H551 125.3 118.7
C51 C55 C54 H552 234.7 241.3
C55 C54 C53 H531 232.4 203.4
C55 C54 C53 H532 122.9 80.7
C53 C54 C55 H541 125.3 118.4
C53 C54 C55 H542 234.7 241.8
H541 C54 C55 H542 109.4 123.4
H551 C55 C54 H552 109.4 122.6
H541 C54 C53 H531 357.7 321.7
H541 C54 C53 H532 248.2 199.1
C53 C54 H541 C55 237.8 246.6
C53 C54 H541 H542 118.9 123.3
C55 C54 H541 H542 241.1 236.6
H541 C54 C55 H551 112.3 160.9
H541 C54 C55 H552 2.8 38.3
H542 C54 C53 H531 107.1 85.1
H542 C54 C53 H532 357.6 322.5
C53 C54 H542 C55 122.2 113.3
C53 C54 H542 H541 241.1 236.7
C55 C54 H542 H541 118.9 123.4
H542 C54 C55 H551 2.9 37.5
H542 C54 C55 H552 253.4 274.9
H551 C55 C51 CP 334.7 335.7
H551 C55 C51 H511 234.4 214.3
C51 C55 H551 C54 238.8 245.3
C51 C55 H551 H552 119.4 122.7
H551 C55 C54 H541 112.3 160.9
H551 C55 C54 H542 2.9 37.5
C54 C55 H551 H552 240.6 237.4
H552 C55 C51 CP 84.2 98.4
H552 C55 C51 H511 343.9 337.0
C51 C55 H552 C54 121.2 114.8
C51 C55 H552 H551 240.6 237.3
H552 C55 C54 H541 2.8 38.3
H552 C55 C54 H542 253.4 274.9
C54 C55 H552 H551 119.4 122.6
OP CP C51 H511 287.1 238.6
C51 CP OP N 180.5 180.0
OP CP N CA 3.0 0.0
OP CP N H1N 183.0 180.0
N CP C51 H511 107.5 58.7
C51 CP N OP 179.6 180.0
CA N CP H1N 180.0 180.0
CP N CA CB 124.3 300.0
CP N CA C 242.6 60.0
CP N CA HA1 2.8 180.0
CP N CA H1N 180.0 180.0
CB CA N C 241.7 240.1
CB CA N HA1 121.5 120.0
N CA CB CG 264.3 300.0
N CA CB HB1 29.6 180.0
N CA CB HB2 139.0 60.0
C CA N HA1 239.8 240.0
N CA C O 184.4 330.1
N CA C C5 63.1 150.0
CP N H1N CA 180.0 180.0
H1N N CA CB 304.3 120.0
H1N N CA C 62.6 240.0
H1N N CA HA1 182.8 0.0
CB CA N H1N 304.3 120.0
N CA CB C 119.0 119.9
N CA CB HA1 239.2 240.1
C CA CB HA1 120.1 120.1
CB CA C O 302.0 90.0
CB CA C C5 180.6 269.9
CG CB CA HB1 234.7 119.9
CG CB CA HB2 125.3 240.0
CA CB CG CD 180.2 180.1
CA CB CG HG1 305.4 60.0
CA CB CG HG2 54.9 300.1
HB1 CB CA HB2 250.6 120.0
C CA N H1N 62.6 240.0
N CA C CB 242.4 240.1
N CA C HA1 120.9 120.0
CB CA C HA1 238.5 239.9
C CA CB CG 145.3 180.0
C CA CB HB1 270.6 60.1
C CA CB HB2 20.0 300.1
O C CA C5 121.3 180.1
N5 C5 C CA 250.7 359.7
S5 C5 C CA 65.6 180.0
HA1 CA N H1N 182.8 0.0
N CA HA1 CB 119.3 119.9
N CA HA1 C 239.3 240.0
CB CA HA1 C 120.0 120.1
HA1 CA CB CG 25.1 59.9
HA1 CA CB HB1 150.4 300.0
HA1 CA CB HB2 259.9 179.9
HA1 CA C O 63.5 210.1
HA1 CA C C5 302.2 30.0
CG CB CA C 145.3 180.0
CG CB CA HA1 25.1 59.9
CA CB CG HB1 125.3 240.1
CA CB CG HB2 234.7 120.1
HB1 CB CG HB2 109.4 240.0
CD CG CB HG1 234.8 120.1
CD CG CB HG2 125.2 240.0
CB CG CD NE 200.9 180.0
CB CG CD HD1 326.2 60.0
CB CG CD HD2 75.6 300.0
HG1 CG CB HG2 250.5 119.9
HB1 CB CA C 270.6 60.1
HB1 CB CA HA1 150.4 300.0
CA CB HB1 CG 229.1 120.0
CA CB HB1 HB2 114.5 240.0
CG CB HB1 HB2 245.5 120.0
HB1 CB CG CD 54.9 300.0
HB1 CB CG HG1 180.1 180.0
HB1 CB CG HG2 289.6 60.0
HB2 CB CA C 20.0 300.1
HB2 CB CA HA1 259.9 179.9
CA CB HB2 CG 130.9 239.9
CA CB HB2 HB1 245.5 120.0
CG CB HB2 HB1 114.6 240.0
HB2 CB CG CD 305.5 60.0
HB2 CB CG HG1 70.7 300.0
HB2 CB CG HG2 180.2 180.0
CD CG CB HB1 54.9 300.0
CD CG CB HB2 305.5 60.0
CB CG CD HG1 125.2 240.0
CB CG CD HG2 234.8 120.0
HG1 CG CD HG2 109.6 240.1
NE CD CG HD1 234.7 120.1
NE CD CG HD2 125.3 240.0
CG CD NE CZ 187.5 180.0
CG CD NE HE1 62.2 360.0
HD1 CD CG HD2 250.6 120.0
HG1 CG CB HB1 180.1 180.0
HG1 CG CB HB2 70.7 300.0
CB CG HG1 CD 236.9 120.1
CB CG HG1 HG2 118.4 240.0
CD CG HG1 HG2 241.5 119.9
HG1 CG CD NE 75.7 300.1
HG1 CG CD HD1 201.0 180.0
HG1 CG CD HD2 310.4 60.0
HG2 CG CB HB1 289.6 60.0
HG2 CG CB HB2 180.2 180.0
CB CG HG2 CD 123.1 239.9
CB CG HG2 HG1 241.6 120.0
CD CG HG2 HG1 118.5 240.0
HG2 CG CD NE 326.1 60.0
HG2 CG CD HD1 91.4 299.9
HG2 CG CD HD2 200.8 180.0
NE CD CG HG1 75.7 300.1
NE CD CG HG2 326.1 60.0
CG CD NE HD1 125.3 239.9
CG CD NE HD2 234.7 120.0
HD1 CD NE HD2 109.4 240.0
CZ NE CD HE1 125.3 180.0
CD NE CZ NH1 359.9 360.0
CD NE CZ NH2 179.1 180.0
HD1 CD CG HG1 201.0 180.0
HD1 CD CG HG2 91.4 299.9
CG CD HD1 NE 234.8 120.1
CG CD HD1 HD2 117.4 240.0
NE CD HD1 HD2 242.6 120.0
HD1 CD NE CZ 62.2 300.0
HD1 CD NE HE1 296.9 120.0
HD2 CD CG HG1 310.4 60.0
HD2 CD CG HG2 200.8 180.0
CG CD HD2 NE 125.2 240.0
CG CD HD2 HD1 242.6 120.0
NE CD HD2 HD1 117.4 240.0
HD2 CD NE CZ 312.8 60.0
HD2 CD NE HE1 187.6 240.0
CZ NE CD HD1 62.2 300.0
CZ NE CD HD2 312.8 60.0
CD NE CZ HE1 234.7 180.0
NH1 CZ NE NH2 180.8 180.0
NE CZ NH1 HN11 258.5 0.0
NE CZ NH2 HN21 180.0 180.0
NE CZ NH2 HN22 54.8 359.8
HE1 NE CD HD1 296.9 120.0
HE1 NE CD HD2 187.6 240.0
CD NE HE1 CZ 136.0 180.0
HE1 NE CZ NH1 125.1 180.0
HE1 NE CZ NH2 304.4 359.9
NH1 CZ NE HE1 125.1 180.0
NE CZ NH1 NH2 179.2 180.0
NH1 CZ NH2 HN21 359.2 360.0
NH1 CZ NH2 HN22 234.0 179.7
NH2 CZ NE HE1 304.4 359.9
NE CZ NH2 NH1 180.7 180.0
NH2 CZ NH1 HN11 79.3 180.1
HN21 NH2 CZ HN22 125.2 180.3
HN11 NH1 CZ NH2 79.3 180.1
CZ NH2 HN21 HN22 234.8 179.7
CZ NH2 HN22 HN21 131.2 180.3
O C CA HA1 63.5 210.1
CA C O C5 238.4 179.9
N5 C5 C O 129.6 179.6
S5 C5 C O 304.5 359.9
CA C C5 N5 250.7 359.7
O C C5 N5 129.6 179.6
C5 N5 C61 C62 0.1 0.6
C5 N5 C61 C66 179.7 180.3
S5 C5 N5 C 184.5 179.7
N5 C5 S5 C62 0.1 0.3
C61 N5 C5 S5 359.9 359.5
C61 N5 C5 C 175.4 179.7
S5 C62 C61 N5 0.0 359.7
C62 C61 N5 C66 180.4 180.3
N5 C61 C62 C63 179.3 179.7
N5 C61 C66 C65 180.8 180.4
N5 C61 C66 H661 0.8 0.3
CA C C5 S5 65.6 180.0
O C C5 S5 304.5 359.9
S5 C5 N5 C61 359.9 359.5
N5 C5 S5 C 175.4 180.3
C5 S5 C62 C61 359.9 360.0
C5 S5 C62 C63 180.8 180.0
C5 C CA HA1 302.2 30.0
CA C C5 O 121.1 180.1
C C5 N5 C61 175.4 179.7
N5 C5 C S5 185.1 179.7
C C5 S5 C62 184.7 180.0
N5 C61 C62 S5 0.0 359.7
C62 S5 C5 C 184.7 180.0
S5 C62 C61 C66 180.4 180.0
C61 C62 S5 C63 179.2 180.0
S5 C62 C63 C64 179.0 180.0
S5 C62 C63 H631 359.0 359.9
N5 C61 C62 C66 179.7 179.7
S5 C62 C61 C63 180.7 180.0
C62 C61 C66 C65 0.4 0.1
C62 C61 C66 H661 180.4 180.0
C61 C62 C63 C64 359.8 0.0
C61 C62 C63 H631 179.8 180.0
N5 C61 C66 C62 180.4 180.3
C66 C61 C62 C63 359.7 360.0
C64 C65 C66 C61 0.0 360.0
C61 C66 C65 H651 180.0 180.0
C65 C66 C61 H661 180.0 180.1
S5 C62 C63 C61 179.1 180.0
C63 C62 C61 C66 359.7 360.0
C64 C63 C62 H631 180.0 180.0
C62 C63 C64 C65 0.6 0.0
C62 C63 C64 H641 180.6 180.0
C62 C63 C64 H631 180.0 180.0
C65 C64 C63 H641 180.0 180.0
C63 C64 C65 C66 359.5 0.0
C63 C64 C65 H651 179.5 180.0
C62 C63 H631 C64 180.0 180.0
H631 C63 C64 C65 180.6 180.1
H631 C63 C64 H641 0.6 0.0
C61 C66 C65 C64 0.0 360.0
C65 C64 C63 H631 180.6 180.1
C63 C64 C65 H641 180.0 180.0
C66 C65 C64 H651 180.0 180.0
C64 C65 C66 H661 180.0 180.0
H641 C64 C63 H631 0.6 0.0
C63 C64 H641 C65 180.0 180.0
H641 C64 C65 C66 179.5 180.0
H641 C64 C65 H651 359.5 0.0
C61 C66 C65 H661 180.0 179.9
C66 C65 C64 H641 179.5 180.0
C64 C65 C66 H651 180.0 180.0
H651 C65 C64 H641 359.5 0.0
C64 C65 H651 C66 180.0 180.0
H651 C65 C66 H661 360.0 0.0
C61 C66 H661 C65 180.0 180.1
H661 C66 C65 H651 360.0 0.0