PDB Chemical Component RV1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RV1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
N |
1.366 |
1.398 |
| C |
C1 |
1.399 |
1.389 |
| C |
C5 |
1.400 |
1.389 |
| O |
S |
1.431 |
1.422 |
| S |
N1 |
1.638 |
1.656 |
| S |
O1 |
1.434 |
1.421 |
| S |
C3 |
1.763 |
1.762 |
| C1 |
C2 |
1.382 |
1.381 |
| N1 |
C6 |
1.368 |
1.348 |
| C2 |
C3 |
1.387 |
1.383 |
| O2 |
C6 |
1.231 |
1.213 |
| C3 |
C4 |
1.389 |
1.384 |
| C4 |
C5 |
1.383 |
1.381 |
| C6 |
C7 |
1.506 |
1.507 |
| C7 |
C8 |
1.496 |
1.530 |
| C7 |
C9 |
1.489 |
1.530 |
| C8 |
C9 |
1.466 |
1.529 |
| N |
HN |
1.000 |
0.970 |
| N |
HNA |
1.000 |
0.970 |
| C1 |
H1 |
1.079 |
1.080 |
| N1 |
HN1 |
1.000 |
0.970 |
| C2 |
H2 |
1.080 |
1.080 |
| C4 |
H4 |
1.080 |
1.080 |
| C5 |
H5 |
1.080 |
1.081 |
| C7 |
H7 |
1.100 |
1.091 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.101 |
1.090 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H9A |
1.100 |
1.091 |
Bond Angles for RV1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
C |
C1 |
120.9 |
120.1 |
| N |
C |
C5 |
120.8 |
120.0 |
| C |
N |
HN |
109.5 |
119.9 |
| C |
N |
HNA |
109.5 |
120.0 |
| C1 |
C |
C5 |
118.4 |
119.9 |
| C |
C1 |
C2 |
121.0 |
119.9 |
| C |
C1 |
H1 |
119.5 |
120.0 |
| C |
C5 |
C4 |
121.0 |
119.9 |
| C |
C5 |
H5 |
119.5 |
120.1 |
| O |
S |
N1 |
109.5 |
106.4 |
| O |
S |
O1 |
120.1 |
123.1 |
| O |
S |
C3 |
108.3 |
106.4 |
| N1 |
S |
O1 |
102.6 |
106.4 |
| N1 |
S |
C3 |
107.7 |
107.2 |
| S |
N1 |
C6 |
124.9 |
120.0 |
| S |
N1 |
HN1 |
117.6 |
120.0 |
| O1 |
S |
C3 |
108.0 |
106.4 |
| S |
C3 |
C2 |
119.5 |
119.9 |
| S |
C3 |
C4 |
119.6 |
119.9 |
| C1 |
C2 |
C3 |
119.4 |
120.1 |
| C2 |
C1 |
H1 |
119.5 |
120.1 |
| C1 |
C2 |
H2 |
120.3 |
119.9 |
| N1 |
C6 |
O2 |
124.0 |
120.0 |
| N1 |
C6 |
C7 |
113.5 |
120.0 |
| C6 |
N1 |
HN1 |
117.6 |
120.0 |
| C2 |
C3 |
C4 |
120.7 |
120.1 |
| C3 |
C2 |
H2 |
120.3 |
119.9 |
| O2 |
C6 |
C7 |
122.5 |
120.0 |
| C3 |
C4 |
C5 |
119.4 |
120.1 |
| C3 |
C4 |
H4 |
120.3 |
119.9 |
| C5 |
C4 |
H4 |
120.3 |
120.0 |
| C4 |
C5 |
H5 |
119.5 |
120.0 |
| C6 |
C7 |
C8 |
118.8 |
117.5 |
| C6 |
C7 |
C9 |
116.8 |
117.5 |
| C6 |
C7 |
H7 |
116.5 |
115.5 |
| C8 |
C7 |
C9 |
58.8 |
60.0 |
| C7 |
C8 |
C9 |
60.3 |
60.0 |
| C8 |
C7 |
H7 |
116.7 |
117.5 |
| C7 |
C8 |
H8 |
120.0 |
117.5 |
| C7 |
C8 |
H8A |
119.9 |
117.5 |
| C7 |
C9 |
C8 |
60.8 |
60.0 |
| C9 |
C7 |
H7 |
116.8 |
117.5 |
| C7 |
C9 |
H9 |
119.8 |
117.5 |
| C7 |
C9 |
H9A |
119.8 |
117.5 |
| C9 |
C8 |
H8 |
120.0 |
117.6 |
| C9 |
C8 |
H8A |
119.9 |
117.5 |
| C8 |
C9 |
H9 |
119.9 |
117.6 |
| C8 |
C9 |
H9A |
119.9 |
117.5 |
| HN |
N |
HNA |
109.5 |
120.1 |
| H8 |
C8 |
H8A |
109.4 |
115.5 |
| H9 |
C9 |
H9A |
109.5 |
115.5 |
Torsion Angles for RV1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C |
N |
C5 |
179.8 |
180.3 |
| N |
C |
C1 |
C2 |
179.7 |
180.0 |
| N |
C |
C1 |
H1 |
359.7 |
359.9 |
| N |
C |
C5 |
C4 |
180.3 |
179.7 |
| N |
C |
C5 |
H5 |
0.3 |
0.0 |
| HN |
N |
C |
HNA |
240.0 |
180.0 |
| N |
C |
C1 |
C5 |
180.2 |
179.7 |
| C1 |
C |
N |
HN |
180.0 |
0.0 |
| C1 |
C |
N |
HNA |
300.0 |
180.0 |
| C1 |
C |
C5 |
C4 |
0.5 |
359.5 |
| C1 |
C |
C5 |
H5 |
180.5 |
179.8 |
| C |
C1 |
C2 |
C3 |
1.7 |
360.0 |
| C2 |
C1 |
C |
H1 |
180.0 |
180.1 |
| C |
C1 |
C2 |
H2 |
181.7 |
180.0 |
| N |
C |
C5 |
C1 |
179.8 |
180.3 |
| C5 |
C |
N |
HN |
0.2 |
179.7 |
| C5 |
C |
N |
HNA |
120.2 |
359.7 |
| C5 |
C |
C1 |
C2 |
359.5 |
0.3 |
| C5 |
C |
C1 |
H1 |
179.5 |
180.2 |
| C3 |
C4 |
C5 |
C |
358.3 |
0.6 |
| C |
C5 |
C4 |
H4 |
178.3 |
180.3 |
| C4 |
C5 |
C |
H5 |
180.0 |
179.7 |
| N1 |
S |
O |
O1 |
241.7 |
237.0 |
| N1 |
S |
O |
C3 |
117.1 |
114.1 |
| O |
S |
N1 |
C6 |
298.8 |
311.5 |
| O |
S |
N1 |
HN1 |
118.8 |
131.5 |
| O1 |
S |
O |
C3 |
235.4 |
237.0 |
| O |
S |
C3 |
C2 |
20.7 |
203.5 |
| O |
S |
C3 |
C4 |
204.8 |
23.5 |
| O |
S |
N1 |
O1 |
128.7 |
132.9 |
| O |
S |
N1 |
C3 |
242.5 |
246.5 |
| O1 |
S |
N1 |
C3 |
113.8 |
113.6 |
| N1 |
S |
C3 |
C2 |
262.3 |
90.0 |
| N1 |
S |
C3 |
C4 |
86.4 |
270.0 |
| S |
N1 |
C6 |
O2 |
0.5 |
0.0 |
| S |
N1 |
C6 |
C7 |
177.9 |
180.0 |
| C6 |
N1 |
S |
HN1 |
180.0 |
180.0 |
| O |
S |
O1 |
N1 |
238.3 |
237.0 |
| O |
S |
O1 |
C3 |
124.7 |
122.9 |
| N1 |
S |
O1 |
C3 |
246.4 |
245.9 |
| O1 |
S |
N1 |
C6 |
170.1 |
178.6 |
| O1 |
S |
N1 |
HN1 |
350.1 |
358.6 |
| O1 |
S |
C3 |
C2 |
152.2 |
336.4 |
| O1 |
S |
C3 |
C4 |
336.3 |
156.4 |
| O |
S |
C3 |
N1 |
118.3 |
113.5 |
| O |
S |
C3 |
O1 |
228.5 |
227.1 |
| N1 |
S |
C3 |
O1 |
110.1 |
113.6 |
| C3 |
S |
N1 |
C6 |
56.3 |
65.0 |
| C3 |
S |
N1 |
HN1 |
236.3 |
245.0 |
| C1 |
C2 |
C3 |
S |
181.2 |
180.0 |
| C2 |
C3 |
S |
C4 |
175.9 |
180.1 |
| S |
C3 |
C2 |
H2 |
1.2 |
360.0 |
| S |
C3 |
C4 |
C5 |
178.8 |
179.7 |
| S |
C3 |
C4 |
H4 |
358.9 |
0.0 |
| C2 |
C1 |
C |
C5 |
359.5 |
0.3 |
| C |
C1 |
C2 |
H1 |
180.0 |
179.9 |
| S |
C3 |
C2 |
C1 |
181.2 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
357.0 |
0.1 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C6 |
N1 |
S |
O1 |
170.1 |
178.6 |
| C6 |
N1 |
S |
C3 |
56.3 |
65.0 |
| S |
N1 |
C6 |
HN1 |
180.0 |
180.0 |
| O2 |
C6 |
N1 |
C7 |
182.7 |
180.0 |
| N1 |
C6 |
C7 |
C8 |
154.7 |
180.0 |
| N1 |
C6 |
C7 |
C9 |
222.1 |
248.6 |
| N1 |
C6 |
C7 |
H7 |
6.8 |
34.3 |
| S |
C3 |
C2 |
C4 |
184.1 |
179.9 |
| C3 |
C2 |
C1 |
H1 |
181.7 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
3.0 |
359.7 |
| C2 |
C3 |
C4 |
H4 |
183.0 |
180.0 |
| N1 |
C6 |
O2 |
C7 |
177.1 |
180.0 |
| O2 |
C6 |
N1 |
HN1 |
180.5 |
180.0 |
| O2 |
C6 |
C7 |
C8 |
332.1 |
360.0 |
| O2 |
C6 |
C7 |
C9 |
39.5 |
68.6 |
| O2 |
C6 |
C7 |
H7 |
184.2 |
214.3 |
| C |
C5 |
C4 |
C3 |
358.3 |
0.6 |
| S |
C3 |
C4 |
C2 |
175.8 |
180.1 |
| C4 |
C3 |
C2 |
H2 |
177.0 |
180.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
179.7 |
| C3 |
C4 |
C5 |
H5 |
178.3 |
180.3 |
| C |
C5 |
C4 |
H5 |
180.0 |
180.3 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.3 |
| N1 |
C6 |
C7 |
O2 |
182.6 |
180.0 |
| C7 |
C6 |
N1 |
HN1 |
357.9 |
360.0 |
| C8 |
C7 |
C6 |
C9 |
292.6 |
291.4 |
| C6 |
C7 |
C8 |
C9 |
105.6 |
107.5 |
| C8 |
C7 |
C6 |
H7 |
147.9 |
145.7 |
| C6 |
C7 |
C8 |
H8 |
215.2 |
215.1 |
| C6 |
C7 |
C8 |
H8A |
356.0 |
360.0 |
| C6 |
C7 |
C9 |
C8 |
251.0 |
252.5 |
| C9 |
C7 |
C6 |
H7 |
215.3 |
214.3 |
| C6 |
C7 |
C9 |
H9 |
0.7 |
0.1 |
| C6 |
C7 |
C9 |
H9A |
141.3 |
145.0 |
| C6 |
C7 |
C8 |
H7 |
212.2 |
215.0 |
| C8 |
C7 |
C9 |
C8 |
-0.0 |
-0.0 |
| C9 |
C7 |
C8 |
H7 |
106.6 |
107.5 |
| C8 |
C7 |
C9 |
H9 |
109.7 |
107.6 |
| C8 |
C7 |
C9 |
H9A |
250.3 |
252.5 |
| C9 |
C8 |
C7 |
H8 |
250.4 |
252.4 |
| C9 |
C8 |
C7 |
H8A |
109.6 |
107.5 |
| C7 |
C8 |
C9 |
H9 |
250.3 |
252.5 |
| C7 |
C8 |
C9 |
H9A |
109.7 |
107.4 |
| H8 |
C8 |
C7 |
H8A |
219.2 |
215.1 |
| C6 |
C7 |
C9 |
H7 |
144.6 |
145.0 |
| C9 |
C7 |
C8 |
C9 |
-0.0 |
360.0 |
| C8 |
C7 |
C9 |
H7 |
253.6 |
252.5 |
| C9 |
C7 |
C8 |
H8 |
109.6 |
107.6 |
| C9 |
C7 |
C8 |
H8A |
250.4 |
252.5 |
| C7 |
C9 |
C8 |
H8 |
250.4 |
252.5 |
| C7 |
C9 |
C8 |
H8A |
109.6 |
107.4 |
| C8 |
C9 |
C7 |
H9 |
250.3 |
252.4 |
| C8 |
C9 |
C7 |
H9A |
109.7 |
107.5 |
| H9 |
C9 |
C7 |
H9A |
219.4 |
215.1 |
| C9 |
C8 |
C7 |
C9 |
-0.0 |
360.0 |
| C9 |
C8 |
C7 |
H7 |
253.4 |
252.5 |
| C7 |
C8 |
C9 |
H8 |
109.6 |
107.5 |
| C7 |
C8 |
C9 |
H8A |
250.4 |
252.6 |
| C8 |
C9 |
C7 |
H7 |
106.4 |
107.5 |
| C7 |
C9 |
C8 |
H9 |
109.7 |
107.5 |
| C7 |
C9 |
C8 |
H9A |
250.3 |
252.6 |
| H8 |
C8 |
C9 |
H8A |
140.9 |
145.1 |
| H9 |
C9 |
C8 |
H9A |
140.7 |
145.1 |
| HN |
N |
C |
C1 |
180.0 |
0.0 |
| HN |
N |
C |
C5 |
0.2 |
179.7 |
| C |
N |
HN |
HNA |
120.0 |
180.0 |
| HNA |
N |
C |
C1 |
300.0 |
180.0 |
| HNA |
N |
C |
C5 |
120.2 |
359.7 |
| C |
N |
HNA |
HN |
239.9 |
180.0 |
| H1 |
C1 |
C |
C5 |
179.5 |
180.2 |
| C |
C1 |
H1 |
C2 |
180.0 |
180.1 |
| H1 |
C1 |
C2 |
C3 |
181.7 |
180.0 |
| H1 |
C1 |
C2 |
H2 |
1.7 |
0.1 |
| HN1 |
N1 |
S |
O1 |
350.1 |
358.6 |
| HN1 |
N1 |
S |
C3 |
236.3 |
245.0 |
| S |
N1 |
HN1 |
C6 |
180.0 |
180.0 |
| HN1 |
N1 |
C6 |
O2 |
180.5 |
180.0 |
| HN1 |
N1 |
C6 |
C7 |
357.9 |
360.0 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
1.7 |
0.1 |
| H2 |
C2 |
C3 |
C4 |
177.0 |
180.0 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
179.7 |
| H4 |
C4 |
C5 |
H5 |
358.3 |
360.0 |
| C |
C5 |
H5 |
C4 |
180.0 |
179.7 |
| H5 |
C5 |
C4 |
H4 |
358.3 |
360.0 |
| C6 |
C7 |
H7 |
C8 |
148.6 |
145.7 |
| C6 |
C7 |
H7 |
C9 |
215.3 |
214.3 |
| C8 |
C7 |
H7 |
C9 |
66.7 |
68.6 |
| H7 |
C7 |
C8 |
C9 |
253.4 |
252.5 |
| H7 |
C7 |
C8 |
H8 |
3.0 |
0.1 |
| H7 |
C7 |
C8 |
H8A |
143.8 |
145.0 |
| H7 |
C7 |
C9 |
C8 |
106.4 |
107.5 |
| H7 |
C7 |
C9 |
H9 |
216.1 |
215.0 |
| H7 |
C7 |
C9 |
H9A |
356.7 |
360.0 |
| H8 |
C8 |
C7 |
C9 |
109.6 |
107.6 |
| C7 |
C8 |
H8 |
C9 |
289.1 |
291.3 |
| H8 |
C8 |
C7 |
H7 |
3.0 |
0.1 |
| C7 |
C8 |
H8 |
H8A |
144.5 |
145.6 |
| C9 |
C8 |
H8 |
H8A |
215.5 |
214.3 |
| H8 |
C8 |
C9 |
H9 |
140.7 |
145.0 |
| H8 |
C8 |
C9 |
H9A |
0.1 |
360.0 |
| H8A |
C8 |
C7 |
C9 |
250.4 |
252.5 |
| C7 |
C8 |
H8A |
C9 |
70.9 |
68.6 |
| H8A |
C8 |
C7 |
H7 |
143.8 |
145.0 |
| C7 |
C8 |
H8A |
H8 |
215.5 |
214.4 |
| C9 |
C8 |
H8A |
H8 |
144.6 |
145.8 |
| H8A |
C8 |
C9 |
H9 |
359.9 |
360.0 |
| H8A |
C8 |
C9 |
H9A |
219.2 |
214.9 |
| C7 |
C9 |
H9 |
C8 |
288.6 |
291.3 |
| H9 |
C9 |
C7 |
H7 |
216.1 |
215.0 |
| C7 |
C9 |
H9 |
H9A |
144.3 |
145.6 |
| H9 |
C9 |
C8 |
H8 |
140.7 |
145.0 |
| H9 |
C9 |
C8 |
H8A |
359.9 |
360.0 |
| C8 |
C9 |
H9 |
H9A |
215.7 |
214.3 |
| C7 |
C9 |
H9A |
C8 |
71.4 |
68.6 |
| H9A |
C9 |
C7 |
H7 |
356.7 |
360.0 |
| C7 |
C9 |
H9A |
H9 |
215.7 |
214.4 |
| H9A |
C9 |
C8 |
H8 |
0.1 |
360.0 |
| H9A |
C9 |
C8 |
H8A |
219.2 |
214.9 |
| C8 |
C9 |
H9A |
H9 |
144.3 |
145.8 |