PDB Chemical Component RUS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RUS
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1P |
P |
1.487 |
1.479 |
| O2P |
P |
1.486 |
1.610 |
| P |
O5' |
1.595 |
1.610 |
| P |
O3P |
1.602 |
1.610 |
| C6 |
N1 |
1.391 |
1.363 |
| C1' |
N1 |
1.505 |
1.464 |
| N1 |
C2 |
1.389 |
1.346 |
| C2 |
N3 |
1.379 |
1.306 |
| C2 |
SE2 |
1.736 |
1.960 |
| C4 |
N3 |
1.385 |
1.345 |
| C5 |
C4 |
1.437 |
1.417 |
| C4 |
O4 |
1.226 |
1.221 |
| C6 |
C5 |
1.340 |
1.353 |
| C5 |
H5 |
1.080 |
1.081 |
| C6 |
H6 |
1.080 |
1.080 |
| C2' |
C1' |
1.522 |
1.545 |
| C1' |
O4' |
1.419 |
1.445 |
| C1' |
H1' |
1.100 |
1.089 |
| C3' |
C2' |
1.526 |
1.544 |
| C2' |
O2' |
1.418 |
1.429 |
| C2' |
H2' |
1.100 |
1.090 |
| O2' |
HO2' |
0.950 |
0.967 |
| O2P |
HO2P |
0.950 |
0.967 |
| O3' |
C3' |
1.428 |
1.429 |
| C3' |
C4' |
1.519 |
1.545 |
| C3' |
H3' |
1.100 |
1.091 |
| O3' |
HO3' |
0.950 |
0.967 |
| O3P |
HO3P |
0.950 |
0.967 |
| C5' |
C4' |
1.517 |
1.530 |
| C4' |
O4' |
1.453 |
1.444 |
| C4' |
H4' |
1.100 |
1.090 |
| C5' |
O5' |
1.422 |
1.430 |
| C5' |
H5' |
1.099 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| SE2 |
HSE2 |
1.460 |
1.560 |
Bond Angles for RUS
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1P |
P |
O5' |
108.3 |
109.5 |
| O1P |
P |
O3P |
106.3 |
109.5 |
| O2P |
P |
O5' |
108.6 |
109.5 |
| O2P |
P |
O3P |
107.6 |
109.5 |
| O3P |
P |
O5' |
104.0 |
109.4 |
| P |
O5' |
C5' |
119.9 |
123.0 |
| P |
O3P |
HO3P |
109.5 |
114.0 |
| N1 |
C2 |
N3 |
114.1 |
121.6 |
| N1 |
C2 |
SE2 |
124.2 |
119.2 |
| SE2 |
C2 |
N3 |
121.7 |
119.2 |
| C2 |
SE2 |
HSE2 |
109.5 |
101.0 |
| C6 |
C5 |
H5 |
120.6 |
120.7 |
| C2' |
C1' |
O4' |
106.4 |
104.8 |
| C2' |
C1' |
H1' |
109.6 |
110.5 |
| O4' |
C1' |
H1' |
111.5 |
110.4 |
| C1' |
O4' |
C4' |
109.4 |
105.3 |
| C3' |
C2' |
H2' |
111.9 |
110.7 |
| O2' |
C2' |
H2' |
103.0 |
110.5 |
| C2' |
O2' |
HO2' |
109.5 |
113.9 |
| O3' |
C3' |
C4' |
112.4 |
110.5 |
| O3' |
C3' |
H3' |
101.8 |
110.5 |
| C4' |
C3' |
H3' |
115.2 |
110.5 |
| C3' |
C4' |
O4' |
103.5 |
104.8 |
| C3' |
C4' |
H4' |
110.0 |
110.4 |
| C5' |
C4' |
H4' |
104.0 |
110.5 |
| O4' |
C4' |
H4' |
115.2 |
110.4 |
| O5' |
C5' |
H5' |
108.7 |
109.5 |
| O5' |
C5' |
H5'A |
108.7 |
109.5 |
| H5' |
C5' |
H5'A |
110.2 |
109.5 |
Torsion Angles for RUS
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2P |
P |
O1P |
O5' |
234.1 |
120.0 |
| O2P |
P |
O1P |
O3P |
122.8 |
240.0 |
| O3P |
P |
O1P |
O5' |
111.3 |
240.0 |
| O1P |
P |
O5' |
C5' |
38.1 |
55.0 |
| O1P |
P |
O3P |
HO3P |
360.0 |
300.0 |
| O1P |
P |
O2P |
O5' |
125.8 |
240.0 |
| O1P |
P |
O2P |
O3P |
237.8 |
120.0 |
| O3P |
P |
O2P |
O5' |
248.0 |
120.0 |
| O2P |
P |
O5' |
C5' |
170.9 |
295.0 |
| O2P |
P |
O3P |
HO3P |
229.3 |
60.0 |
| O1P |
P |
O5' |
O3P |
112.8 |
240.0 |
| O2P |
P |
O5' |
O3P |
245.6 |
120.0 |
| O5' |
P |
O3P |
HO3P |
114.2 |
180.0 |
| P |
O5' |
C5' |
H5' |
50.5 |
60.0 |
| P |
O5' |
C5' |
H5'A |
290.5 |
300.0 |
| O1P |
P |
O3P |
O5' |
245.8 |
120.0 |
| O2P |
P |
O3P |
O5' |
115.0 |
240.0 |
| O3P |
P |
O5' |
C5' |
285.2 |
175.0 |
| SE2 |
C2 |
N1 |
N3 |
179.7 |
180.0 |
| N1 |
C2 |
SE2 |
HSE2 |
180.3 |
180.0 |
| N1 |
C2 |
N3 |
SE2 |
179.8 |
180.0 |
| N3 |
C2 |
SE2 |
HSE2 |
360.0 |
360.0 |
| N1 |
C2 |
SE2 |
N3 |
180.3 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
359.6 |
0.1 |
| O4' |
C1' |
C2' |
H1' |
120.7 |
118.9 |
| C2' |
C1' |
O4' |
C4' |
5.7 |
319.5 |
| C2' |
C1' |
O4' |
H1' |
240.5 |
241.1 |
| C3' |
C4' |
O4' |
C1' |
22.1 |
40.5 |
| C1' |
O4' |
C4' |
H4' |
261.9 |
281.7 |
| C2' |
C1' |
H1' |
O4' |
117.6 |
115.4 |
| H1' |
C1' |
O4' |
C4' |
125.2 |
78.4 |
| C3' |
C2' |
C1' |
O4' |
329.3 |
24.0 |
| C3' |
C2' |
C1' |
H1' |
208.5 |
265.1 |
| O2' |
C2' |
C3' |
H2' |
117.1 |
122.8 |
| C3' |
C2' |
O2' |
HO2' |
292.6 |
294.7 |
| O2' |
C2' |
C1' |
O4' |
91.1 |
142.7 |
| O2' |
C2' |
C1' |
H1' |
330.3 |
23.8 |
| C3' |
C2' |
O2' |
H2' |
238.0 |
237.1 |
| H2' |
C2' |
C1' |
O4' |
207.9 |
265.2 |
| H2' |
C2' |
C1' |
H1' |
87.2 |
146.4 |
| H2' |
C2' |
O2' |
HO2' |
54.7 |
57.5 |
| HO2' |
O2' |
C2' |
H2' |
54.7 |
57.5 |
| HO2P |
O2P |
P |
O5' |
234.1 |
299.9 |
| HO2P |
O2P |
P |
O3P |
122.1 |
59.9 |
| O3' |
C3' |
C2' |
H2' |
288.0 |
237.3 |
| C4' |
C3' |
O3' |
H3' |
236.1 |
237.4 |
| O3' |
C3' |
C4' |
O4' |
198.1 |
217.3 |
| O3' |
C3' |
C4' |
H4' |
321.7 |
336.2 |
| C1' |
O4' |
C4' |
C3' |
22.1 |
40.5 |
| C4' |
C3' |
C2' |
H2' |
167.6 |
118.6 |
| O3' |
C3' |
C4' |
H3' |
116.0 |
122.6 |
| C5' |
C4' |
C3' |
H4' |
116.9 |
122.4 |
| O4' |
C4' |
C3' |
H4' |
236.4 |
241.2 |
| H3' |
C3' |
C2' |
H2' |
44.1 |
360.0 |
| O3' |
C3' |
H3' |
C4' |
238.0 |
237.4 |
| H3' |
C3' |
C4' |
O4' |
82.1 |
94.7 |
| H3' |
C3' |
C4' |
H4' |
205.7 |
213.5 |
| HO3' |
O3' |
C3' |
C4' |
293.3 |
176.1 |
| HO3' |
O3' |
C3' |
H3' |
57.2 |
298.7 |
| HO3P |
O3P |
P |
O5' |
114.2 |
180.0 |
| P |
O5' |
C5' |
C4' |
170.5 |
180.0 |
| C5' |
C4' |
C3' |
H3' |
322.6 |
335.9 |
| C3' |
C4' |
C5' |
H4' |
239.7 |
237.7 |
| O4' |
C4' |
C5' |
H4' |
123.7 |
122.3 |
| C4' |
O4' |
C1' |
H1' |
125.2 |
78.4 |
| O4' |
C4' |
C3' |
H3' |
82.1 |
94.7 |
| C3' |
C4' |
O4' |
H4' |
120.2 |
118.8 |
| C5' |
C4' |
O4' |
H4' |
243.2 |
237.6 |
| H4' |
C4' |
C3' |
H3' |
205.7 |
213.5 |
| C3' |
C4' |
H4' |
O4' |
243.5 |
244.7 |
| O5' |
C5' |
C4' |
H4' |
182.2 |
307.3 |
| H5' |
C5' |
O5' |
H5'A |
120.0 |
120.0 |
| H5' |
C5' |
C4' |
H4' |
302.2 |
67.3 |
| O5' |
C5' |
H5' |
H5'A |
240.9 |
240.0 |
| H5'A |
C5' |
C4' |
H4' |
62.2 |
187.3 |
| O5' |
C5' |
H5'A |
H5' |
119.1 |
120.0 |
| HSE2 |
SE2 |
C2 |
N3 |
360.0 |
360.0 |