PDB Chemical Component RUG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RUG

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	C2	1.431	1.429
O2	HO2	0.950	0.967
C3	C2	1.541	1.532
C2	C1	1.544	1.531
C2	H2	1.101	1.090
O3	C3	1.426	1.429
C3	C4	1.531	1.532
C3	H3	1.100	1.090
O3	HO3	0.950	0.967
O4	C4	1.417	1.429
C4	C5	1.540	1.531
C4	H4	1.100	1.090
O4	HO4	0.950	0.968
C5	C6	1.527	1.530
C5	O5	1.444	1.429
C5	H5	1.100	1.090
O6	C6	1.430	1.429
C6	H61	1.100	1.090
C6	H62	1.100	1.090
O6	HO6	0.950	0.967
C1	O5	1.457	1.429
C1	N1	1.475	1.466
C1	H1	1.100	1.090
C7	N1	1.333	1.354
N1	N2	1.237	1.287
C7	C8	1.323	1.353
C7	H7	1.080	1.079
N2	N3	1.239	1.286
C8	N3	1.333	1.338
C8	C9	1.527	1.508
C9	O9	1.429	1.429
C9	H9	1.100	1.090
C9	H9A	1.100	1.090
O9	HO9	0.950	0.968

Bond Angles for RUG

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	O2	HO2	109.5	114.0
O2	C2	C1	111.0	109.5
O2	C2	H2	107.3	109.5
C3	C2	C1	109.7	109.1
C3	C2	H2	108.6	109.5
C1	C2	H2	108.9	109.5
C2	C1	O5	106.8	109.4
C2	C1	N1	113.6	109.4
C2	C1	H1	107.6	109.5
O3	C3	C4	108.8	109.5
O3	C3	H3	109.2	109.6
C4	C3	H3	110.1	109.6
C3	C4	C5	111.2	109.1
C3	C4	H4	109.1	109.5
O4	C4	C5	109.6	109.5
O4	C4	H4	110.6	109.6
C5	C4	H4	107.9	109.5
C4	C5	C6	112.7	109.4
C4	C5	O5	108.6	109.4
C4	C5	H5	107.6	109.5
C6	C5	O5	108.6	109.5
C6	C5	H5	107.6	109.5
C5	C6	H61	109.5	109.5
C5	C6	H62	109.5	109.5
O5	C5	H5	111.8	109.6
O6	C6	H61	109.4	109.4
O6	C6	H62	109.4	109.5
H61	C6	H62	109.5	109.5
N1	C1	H1	107.9	109.5
C1	N1	N2	122.1	125.9
C7	N1	N2	109.9	108.3
N1	N2	N3	110.3	110.1
C8	C7	H7	127.6	127.0
C7	C8	N3	106.1	106.5
C7	C8	C9	126.7	126.7
C8	C9	O9	109.8	109.5
C8	C9	H9	109.4	109.5
C8	C9	H9A	109.3	109.4
O9	C9	H9	109.4	109.5
O9	C9	H9A	109.3	109.5
C9	O9	HO9	109.5	114.0
H9	C9	H9A	109.7	109.5

Torsion Angles for RUG

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	O2	C1	122.5	119.7
C3	C2	O2	H2	241.4	239.8
C1	C2	O2	H2	118.9	120.2
O2	C2	C1	O5	184.4	177.5
O2	C2	C1	N1	301.6	297.5
O2	C2	C1	H1	61.0	57.5
HO2	O2	C2	C1	10.1	180.0
HO2	O2	C2	H2	251.2	59.8
C3	C2	O2	HO2	132.6	299.7
O2	C2	C3	C1	236.8	240.1
O2	C2	C3	H2	117.9	120.2
C1	C2	C3	H2	241.1	240.1
C3	C2	C1	O5	61.0	57.6
C3	C2	C1	N1	178.2	177.6
C3	C2	C1	H1	297.5	297.6
C1	C2	O2	HO2	10.1	180.0
O2	C2	C1	H2	242.1	239.8
C3	C2	C1	H2	118.7	119.9
N1	C1	C2	H1	240.7	240.0
C2	C1	N1	N2	140.8	304.9
H2	C2	O2	HO2	251.2	59.8
O2	C2	H2	C1	120.2	120.2
C3	C2	H2	C1	240.6	240.3
H2	C2	C1	O5	302.2	297.7
H2	C2	C1	N1	59.5	57.7
H2	C2	C1	H1	178.8	177.7
O3	C3	C2	C1	186.0	183.2
O3	C3	C2	H2	304.9	303.1
C4	C3	O3	H3	120.2	120.2
O3	C3	C4	C5	172.7	176.9
O3	C3	C4	H4	53.8	57.0
C4	C3	C2	C1	306.2	303.0
C4	C3	C2	H2	65.1	62.9
O3	C3	C4	H3	240.4	239.8
O4	C4	C3	C5	120.6	119.9
O4	C4	C3	H4	239.4	239.8
C5	C4	C3	H4	118.9	119.9
C3	C4	C5	C6	183.3	182.4
C3	C4	C5	O5	303.7	302.4
C3	C4	C5	H5	64.8	62.4
H3	C3	C2	C1	66.4	62.9
H3	C3	C2	H2	185.3	182.8
O3	C3	H3	C4	119.4	120.2
H3	C3	C4	C5	292.3	297.1
H3	C3	C4	H4	173.5	177.2
HO3	O3	C3	C4	84.7	180.4
HO3	O3	C3	H3	324.6	60.2
O4	C4	C3	H3	52.9	57.0
C3	C4	O4	C5	238.5	240.4
C3	C4	O4	H4	119.6	120.2
C5	C4	O4	H4	241.1	239.8
O4	C4	C5	C6	63.4	62.5
O4	C4	C5	O5	183.8	182.5
O4	C4	C5	H5	304.9	302.6
C5	C4	C3	H3	292.3	297.1
C3	C4	C5	H4	240.5	240.1
O4	C4	C5	H4	120.6	120.2
C6	C5	C4	O5	239.6	240.1
C6	C5	C4	H5	118.5	120.0
C4	C5	C6	H61	170.3	304.9
C4	C5	C6	H62	290.4	65.0
O5	C5	C4	H5	238.9	239.9
H4	C4	C3	H3	173.5	177.2
C3	C4	H4	C5	120.9	119.6
O4	C4	H4	C5	240.1	239.8
H4	C4	C5	C6	302.9	302.3
H4	C4	C5	O5	63.2	62.2
H4	C4	C5	H5	184.4	182.3
HO4	O4	C4	C5	13.5	179.7
HO4	O4	C4	H4	132.4	299.9
C6	C5	C4	H4	302.9	302.3
C4	C5	C6	O5	120.4	119.9
C4	C5	C6	H5	241.5	240.0
O5	C5	C6	H5	121.1	120.1
O6	C6	C5	H61	240.0	240.1
O6	C6	C5	H62	120.0	120.0
H61	C6	C5	H62	240.0	239.9
C2	C1	O5	C5	291.7	298.8
O5	C5	C4	H4	63.2	62.2
C4	C5	O5	C6	237.1	240.1
C4	C5	O5	H5	118.5	120.1
C6	C5	O5	H5	241.4	240.0
O5	C5	C6	H61	49.9	185.1
O5	C5	C6	H62	170.0	305.1
H5	C5	C4	H4	184.4	182.3
C4	C5	H5	C6	121.7	120.0
C4	C5	H5	O5	240.8	240.0
C6	C5	H5	O5	119.1	120.1
H5	C5	C6	H61	288.8	65.0
H5	C5	C6	H62	48.8	185.0
O6	C6	C5	O5	289.9	65.1
O6	C6	C5	H5	168.8	305.0
C5	C6	O6	H61	120.0	120.0
C5	C6	O6	H62	240.0	240.0
H61	C6	O6	H62	120.0	120.0
H61	C6	C5	O5	49.9	185.1
H61	C6	C5	H5	288.8	65.0
C5	C6	H61	H62	120.0	120.0
O6	C6	H61	H62	240.1	240.0
H62	C6	C5	O5	170.0	305.1
H62	C6	C5	H5	48.8	185.0
C5	C6	H62	H61	240.0	240.0
O6	C6	H62	H61	119.9	120.0
HO6	O6	C6	H61	162.4	60.1
HO6	O6	C6	H62	42.5	300.0
O5	C1	C2	H2	302.2	297.7
C2	C1	O5	N1	121.8	119.9
C2	C1	O5	H1	241.0	240.0
C1	O5	C5	H5	307.3	301.2
N1	C1	C2	H2	59.5	57.7
C2	C1	N1	O5	242.6	240.1
C2	C1	N1	H1	119.2	120.0
C7	N1	C1	N2	177.9	180.4
C1	N1	N2	N3	179.2	180.0
H1	C1	C2	H2	178.8	177.7
C2	C1	H1	O5	118.6	119.9
C2	C1	H1	N1	237.1	240.0
H1	C1	N1	N2	21.6	184.9
C7	N1	C1	H1	199.5	5.3
C1	N1	C7	N2	181.9	179.7
C7	N1	N2	N3	1.0	359.7
N2	N1	C1	H1	21.6	184.9
C8	C7	N1	N2	359.2	0.3
C7	C8	C9	O9	204.9	359.9
C7	C8	C9	H9	324.9	120.0
C7	C8	C9	H9A	85.1	240.0
H7	C7	N1	N2	179.2	180.3
H7	C7	C8	N3	180.4	179.8
H7	C7	C8	C9	0.6	0.0
C7	C8	N3	N2	0.1	0.1
N3	C8	C7	H7	180.4	179.8
C7	C8	N3	C9	180.2	180.2
C9	C8	C7	H7	0.6	0.0
C7	C8	C9	N3	179.8	179.7
O9	C9	C8	H9	240.0	239.9
O9	C9	C8	H9A	119.9	119.9
C8	C9	O9	HO9	174.7	180.0
H9	C9	C8	H9A	239.9	240.0
C8	C9	O9	H9	120.0	120.0
C8	C9	O9	H9A	240.1	240.1
H9	C9	O9	H9A	120.1	120.0
C8	C9	H9	O9	239.7	240.0
C8	C9	H9	H9A	119.9	120.0
O9	C9	H9	H9A	240.1	240.0
H9	C9	O9	HO9	54.7	60.0
C8	C9	H9A	O9	120.2	119.9
C8	C9	H9A	H9	240.1	240.0
O9	C9	H9A	H9	119.9	120.1
H9A	C9	O9	HO9	294.5	299.9
HO9	O9	C9	H9	54.7	60.0
HO9	O9	C9	H9A	294.5	299.9