PDB Chemical Component RU5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RU5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N1	1.450	1.348
C1	C2	1.524	1.476
C1	OAB	1.183	1.216
O1	C12	1.397	1.357
O1	C15	1.397	1.359
C2	C3	1.312	1.395
C2	C8	1.523	1.402
C3	C4	1.526	1.383
N3	C4	1.397	1.383
N3	C5	1.425	1.368
C4	C6	1.307	1.409
N4	C5	1.285	1.313
N4	C6	1.496	1.347
C5	C9	1.525	1.477
C6	C7	1.527	1.402
C7	C8	1.315	1.362
C9	C10	1.526	1.397
C9	C14	1.314	1.396
CLA	C18	1.783	1.736
C10	C11	1.316	1.378
C11	C12	1.526	1.390
C12	C13	1.313	1.390
C13	C14	1.524	1.378
C15	C16	1.315	1.388
C15	C20	1.525	1.387
C16	C17	1.526	1.381
C17	C18	1.315	1.384
C18	C19	1.525	1.384
C19	C20	1.315	1.381
N1	HN1	1.000	0.970
N1	HN1A	1.000	0.970
C3	H3	1.080	1.080
N3	HN3	1.000	0.971
C7	H7	1.080	1.080
C8	H8	1.080	1.080
C10	H10	1.080	1.081
C11	H11	1.080	1.080
C13	H13	1.080	1.080
C14	H14	1.080	1.080
C16	H16	1.080	1.080
C17	H17	1.080	1.079
C19	H19	1.080	1.080
C20	H20	1.080	1.080

Bond Angles for RU5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N1	C1	C2	119.7	120.0
N1	C1	OAB	119.9	120.0
C1	N1	HN1	120.0	120.0
C1	N1	HN1A	120.0	120.0
C2	C1	OAB	120.4	120.0
C1	C2	C3	119.7	119.9
C1	C2	C8	120.4	119.9
C12	O1	C15	110.5	118.0
O1	C12	C11	120.6	119.9
O1	C12	C13	119.3	119.9
O1	C15	C16	119.9	120.0
O1	C15	C20	120.1	120.1
C3	C2	C8	119.9	120.2
C2	C3	C4	120.0	119.6
C2	C3	H3	120.0	120.2
C2	C8	C7	120.0	120.5
C2	C8	H8	120.0	119.8
C3	C4	N3	132.2	133.9
C3	C4	C6	120.2	120.0
C4	C3	H3	120.0	120.2
C4	N3	C5	108.6	107.1
N3	C4	C6	107.7	106.1
C4	N3	HN3	125.7	126.5
N3	C5	N4	107.9	109.7
N3	C5	C9	125.4	125.1
C5	N3	HN3	125.7	126.4
C4	C6	N4	107.9	107.2
C4	C6	C7	119.9	119.7
C5	N4	C6	107.9	109.8
N4	C5	C9	126.6	125.2
N4	C6	C7	132.2	133.1
C5	C9	C10	120.8	120.1
C5	C9	C14	119.2	120.1
C6	C7	C8	120.0	120.1
C6	C7	H7	120.0	120.0
C8	C7	H7	120.0	119.9
C7	C8	H8	120.0	119.7
C10	C9	C14	120.0	119.8
C9	C10	C11	119.9	119.9
C9	C10	H10	120.1	120.0
C9	C14	C13	120.1	120.0
C9	C14	H14	119.9	120.0
CLA	C18	C17	119.8	119.9
CLA	C18	C19	120.1	120.0
C10	C11	C12	120.0	120.1
C11	C10	H10	120.1	120.1
C10	C11	H11	120.0	119.9
C11	C12	C13	120.1	120.1
C12	C11	H11	120.0	119.9
C12	C13	C14	119.9	120.1
C12	C13	H13	120.0	120.0
C14	C13	H13	120.0	119.9
C13	C14	H14	120.0	120.0
C16	C15	C20	120.1	119.9
C15	C16	C17	120.0	120.0
C15	C16	H16	120.0	120.1
C15	C20	C19	120.0	120.0
C15	C20	H20	120.0	120.0
C16	C17	C18	119.9	120.0
C17	C16	H16	120.0	120.0
C16	C17	H17	120.1	120.0
C17	C18	C19	120.2	120.1
C18	C17	H17	120.0	119.9
C18	C19	C20	119.9	120.1
C18	C19	H19	120.1	120.0
C20	C19	H19	120.0	120.0
C19	C20	H20	120.0	120.0
HN1	N1	HN1A	120.0	120.0

Torsion Angles for RU5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	N1	OAB	180.2	180.4
N1	C1	C2	C3	22.3	179.9
N1	C1	C2	C8	202.3	359.6
HN1	N1	C1	HN1A	180.0	180.1
N1	C1	C2	OAB	179.8	179.6
C2	C1	N1	HN1	180.2	0.1
C2	C1	N1	HN1A	0.3	180.0
C3	C2	C1	C8	180.0	180.3
C1	C2	C3	C4	179.9	179.9
C1	C2	C3	H3	359.9	360.0
C1	C2	C8	C7	180.1	179.7
C1	C2	C8	H8	0.1	0.1
N1	C1	OAB	C2	180.2	180.4
OAB	C1	N1	HN1	360.0	179.7
OAB	C1	N1	HN1A	180.0	359.6
OAB	C1	C2	C3	202.6	0.3
OAB	C1	C2	C8	22.5	180.0
C12	O1	C15	C16	270.9	6.2
C12	O1	C15	C20	91.4	185.9
C10	C11	C12	O1	180.6	180.0
C11	C12	O1	C13	179.0	180.1
O1	C12	C11	H11	0.6	360.0
O1	C12	C13	C14	179.3	179.7
O1	C12	C13	H13	359.3	0.1
C15	O1	C12	C11	330.2	247.4
C15	O1	C12	C13	151.2	67.3
C16	C15	O1	C20	179.5	180.3
O1	C15	C16	C17	180.3	180.0
O1	C15	C16	H16	0.3	359.9
O1	C15	C20	C19	179.8	179.8
O1	C15	C20	H20	359.7	360.0
C3	C2	C1	OAB	202.6	0.3
C1	C2	C3	C8	180.0	179.7
C3	C2	C8	C7	0.1	359.4
C3	C2	C8	H8	180.1	179.8
C2	C3	C4	N3	180.1	180.0
C2	C3	C4	C6	360.0	0.0
C4	C3	C2	H3	180.0	180.0
C8	C2	C1	OAB	22.5	180.0
C1	C2	C8	C3	180.0	180.3
C8	C2	C3	C4	360.0	0.3
C8	C2	C3	H3	180.0	180.3
C6	C7	C8	C2	359.9	0.6
C2	C8	C7	H7	179.9	180.3
C7	C8	C2	H8	180.0	179.7
C4	C3	C2	C8	360.0	0.3
C2	C3	C4	H3	180.0	180.0
C3	C4	N3	C5	180.0	180.0
N3	C4	C3	C6	180.1	180.0
C3	C4	N3	HN3	0.0	360.0
C3	C4	C6	N4	180.0	180.0
C3	C4	C6	C7	0.0	360.0
C3	C4	N3	C6	179.9	180.0
N3	C4	C3	H3	0.1	0.0
C4	N3	C5	N4	359.9	360.0
C4	N3	C5	C9	180.1	180.0
C5	N3	C4	HN3	180.0	180.1
N3	C4	C6	N4	360.0	0.0
N3	C4	C6	C7	179.9	180.0
C5	N3	C4	C6	0.1	0.0
C4	N3	C5	HN3	180.0	179.9
N3	C5	N4	C6	0.1	0.0
N4	C5	N3	C9	179.8	180.0
N3	C5	C9	C10	199.0	180.0
N3	C5	C9	C14	20.2	359.7
C3	C4	C6	N3	180.1	180.0
C6	C4	C3	H3	180.0	180.0
C6	C4	N3	C5	0.1	0.0
C6	C4	N3	HN3	180.1	180.0
C5	N4	C6	C4	360.0	360.0
N4	C6	C4	C7	180.0	180.0
C4	C6	C7	C8	0.0	359.7
C4	C6	C7	H7	180.1	180.0
N3	C5	N4	C9	180.2	180.0
N4	C5	N3	HN3	179.9	180.0
C4	C6	N4	C5	360.0	360.0
C5	N4	C6	C7	180.0	180.0
N4	C5	C9	C10	19.3	0.0
N4	C5	C9	C14	200.5	179.7
C4	C6	N4	C7	180.0	180.0
C6	N4	C5	C9	179.8	180.0
N4	C6	C7	C8	180.0	179.7
N4	C6	C7	H7	0.1	359.9
N3	C5	C9	N4	179.7	180.0
C9	C5	N3	HN3	0.1	0.0
C9	C5	N4	C6	179.8	180.0
C10	C9	C5	C14	178.8	180.3
C5	C9	C10	C11	180.4	180.0
C5	C9	C10	H10	0.4	359.9
C5	C9	C14	C13	179.5	179.7
C5	C9	C14	H14	359.5	0.0
C2	C8	C7	C6	359.9	0.6
C4	C6	C7	N4	180.0	180.0
C8	C7	C6	H7	180.0	179.8
C6	C7	C8	H8	179.9	180.2
C2	C8	C7	H8	180.0	180.3
C6	C7	C8	H7	180.0	180.2
C5	C9	C10	C14	181.2	179.7
C10	C9	C14	C13	0.7	359.4
C10	C9	C14	H14	180.7	179.7
C9	C10	C11	C12	0.6	360.0
C11	C10	C9	H10	180.0	180.1
C9	C10	C11	H11	180.6	180.0
C5	C9	C14	C10	178.8	180.3
C14	C9	C10	C11	359.2	0.3
C14	C9	C10	H10	179.1	180.2
C12	C13	C14	C9	359.5	0.6
C9	C14	C13	H13	179.5	180.3
C13	C14	C9	H14	180.0	179.7
C16	C17	C18	CLA	180.0	180.0
C17	C18	CLA	C19	180.0	180.0
CLA	C18	C17	H17	360.0	0.0
CLA	C18	C19	C20	180.1	179.7
CLA	C18	C19	H19	0.1	360.0
O1	C12	C11	C10	180.6	180.0
C11	C10	C9	C14	359.2	0.3
C9	C10	C11	H10	180.0	179.9
C10	C11	C12	C13	359.6	0.1
C12	C11	C10	H11	180.0	180.0
C11	C12	O1	C15	330.2	247.4
O1	C12	C11	C13	181.0	179.9
C12	C11	C10	H10	180.6	180.0
C10	C11	C12	H11	180.0	180.0
C11	C12	C13	C14	0.3	359.6
C11	C12	C13	H13	180.3	180.0
C13	C12	O1	C15	151.2	67.3
O1	C12	C13	C11	179.0	180.1
C9	C14	C13	C12	359.5	0.6
C13	C12	C11	H11	179.6	180.1
C14	C13	C12	H13	180.0	179.6
C12	C13	C14	H14	179.5	180.3
C9	C14	C13	H14	180.0	180.3
C12	C13	C14	H13	180.0	180.4
O1	C15	C16	C20	180.5	179.7
C16	C15	C20	C19	0.2	359.5
C16	C15	C20	H20	180.2	179.7
C15	C16	C17	C18	0.1	360.0
C17	C16	C15	H16	180.0	180.1
C15	C16	C17	H17	180.2	180.0
O1	C15	C20	C16	179.5	180.3
C20	C15	C16	C17	359.8	0.3
C20	C15	C16	H16	179.8	180.2
C18	C19	C20	C15	359.8	0.5
C15	C20	C19	H19	179.8	180.3
C19	C20	C15	H20	180.0	179.8
CLA	C18	C17	C16	180.0	180.0
C17	C16	C15	C20	359.8	0.3
C15	C16	C17	H16	180.0	179.9
C16	C17	C18	C19	359.9	0.0
C18	C17	C16	H17	180.0	180.0
CLA	C18	C17	C19	180.0	180.0
C18	C17	C16	H16	180.1	180.0
C16	C17	C18	H17	180.0	180.0
C17	C18	C19	C20	0.1	359.7
C17	C18	C19	H19	180.1	180.0
CLA	C18	C19	C17	180.0	180.0
C15	C20	C19	C18	359.8	0.5
C19	C18	C17	H17	179.9	180.0
C20	C19	C18	H19	180.0	179.8
C18	C19	C20	H20	179.9	180.3
C15	C20	C19	H20	180.0	180.2
C18	C19	C20	H19	180.0	180.2
HN1	N1	C1	C2	180.2	0.1
HN1	N1	C1	OAB	360.0	179.7
C1	N1	HN1	HN1A	180.0	179.9
HN1A	N1	C1	C2	0.3	180.0
HN1A	N1	C1	OAB	180.0	359.6
C1	N1	HN1A	HN1	180.0	180.1
H3	C3	C2	C8	180.0	180.3
C2	C3	H3	C4	180.0	180.0
H3	C3	C4	N3	0.1	0.0
H3	C3	C4	C6	180.0	180.0
C4	N3	HN3	C5	180.0	180.1
HN3	N3	C4	C6	180.1	180.0
HN3	N3	C5	N4	179.9	180.0
HN3	N3	C5	C9	0.1	0.0
C6	C7	H7	C8	180.0	179.8
H7	C7	C8	H8	359.9	360.0
C2	C8	H8	C7	180.0	179.7
H8	C8	C7	H7	359.9	360.0
H10	C10	C9	C14	179.1	180.2
C9	C10	H10	C11	180.0	180.1
H10	C10	C11	C12	180.6	180.0
H10	C10	C11	H11	0.7	0.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C10	H10	0.7	0.0
H11	C11	C12	C13	179.6	180.1
C12	C13	H13	C14	180.0	179.6
H13	C13	C14	H14	359.5	359.9
C9	C14	H14	C13	180.0	179.7
H14	C14	C13	H13	359.5	359.9
H16	C16	C15	C20	179.8	180.2
C15	C16	H16	C17	180.0	180.1
H16	C16	C17	C18	180.1	180.0
H16	C16	C17	H17	0.1	0.0
C16	C17	H17	C18	180.0	180.0
H17	C17	C16	H16	0.1	0.0
H17	C17	C18	C19	179.9	180.0
C18	C19	H19	C20	180.0	179.8
H19	C19	C20	H20	359.9	0.1
C15	C20	H20	C19	180.0	179.8
H20	C20	C19	H19	359.9	0.1