PDB Chemical Component RTY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RTY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O |
1.439 |
1.429 |
| C |
H5 |
1.100 |
1.090 |
| N |
CA |
1.477 |
1.470 |
| N |
H |
1.000 |
1.010 |
| N |
H2 |
1.000 |
1.009 |
| O |
HO |
0.950 |
0.968 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C2 |
O1 |
1.237 |
1.208 |
| C2 |
O2 |
1.430 |
1.343 |
| C3 |
C2 |
1.513 |
1.506 |
| C3 |
H3 |
1.100 |
1.090 |
| C3 |
H3A |
1.100 |
1.090 |
| C4 |
C1 |
1.538 |
1.530 |
| C4 |
C3 |
1.505 |
1.530 |
| C4 |
H4 |
1.099 |
1.089 |
| C4 |
H4A |
1.100 |
1.090 |
| C6 |
C |
1.512 |
1.529 |
| C6 |
BR1 |
1.900 |
1.966 |
| C6 |
H6 |
1.100 |
1.089 |
| C6 |
H6A |
1.100 |
1.090 |
| CA |
C |
1.533 |
1.530 |
| CA |
CB |
1.528 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB |
1.100 |
1.091 |
| CB |
HBA |
1.099 |
1.090 |
| CG |
CB |
1.497 |
1.506 |
| CG |
CD2 |
1.381 |
1.383 |
| OH |
C1 |
1.438 |
1.429 |
| OH |
CZ |
1.386 |
1.359 |
| CZ |
CE2 |
1.390 |
1.388 |
| CD1 |
CG |
1.391 |
1.383 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CE1 |
CZ |
1.383 |
1.387 |
| CE1 |
CD1 |
1.383 |
1.381 |
| CE1 |
HE1 |
1.080 |
1.081 |
| CE2 |
CD2 |
1.357 |
1.381 |
| CE2 |
HE2 |
1.080 |
1.080 |
| O2 |
H20 |
0.950 |
0.967 |
Bond Angles for RTY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
H5 |
108.4 |
109.4 |
| C |
O |
HO |
109.5 |
114.0 |
| C6 |
C |
H5 |
110.6 |
109.5 |
| CA |
C |
H5 |
108.4 |
109.5 |
| CA |
N |
H |
109.5 |
110.9 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
CB |
107.9 |
109.4 |
| N |
CA |
HA |
109.9 |
109.5 |
| H |
N |
H2 |
109.5 |
111.1 |
| H1 |
C1 |
H1A |
111.0 |
109.5 |
| C4 |
C1 |
H1 |
107.9 |
109.5 |
| OH |
C1 |
H1 |
107.8 |
109.5 |
| C4 |
C1 |
H1A |
107.9 |
109.5 |
| OH |
C1 |
H1A |
107.9 |
109.4 |
| C3 |
C2 |
O2 |
119.2 |
120.0 |
| C2 |
O2 |
H20 |
109.5 |
116.9 |
| H3 |
C3 |
H3A |
110.9 |
109.4 |
| C4 |
C3 |
H3 |
108.0 |
109.4 |
| C4 |
C3 |
H3A |
108.0 |
109.5 |
| H4 |
C4 |
H4A |
110.7 |
109.5 |
| BR1 |
C6 |
H6 |
109.4 |
109.4 |
| BR1 |
C6 |
H6A |
109.5 |
109.4 |
| H6 |
C6 |
H6A |
109.5 |
109.5 |
| CB |
CA |
HA |
111.3 |
109.5 |
| CA |
CB |
HB |
109.2 |
109.5 |
| CA |
CB |
HBA |
109.2 |
109.4 |
| HB |
CB |
HBA |
109.7 |
109.5 |
| CG |
CB |
HB |
109.2 |
109.5 |
| CG |
CB |
HBA |
109.2 |
109.5 |
| CD1 |
CG |
CD2 |
118.5 |
120.1 |
| CG |
CD2 |
HD2 |
119.3 |
119.9 |
| OH |
CZ |
CE2 |
118.6 |
120.0 |
| CE1 |
CZ |
CE2 |
120.2 |
119.9 |
| CZ |
CE2 |
CD2 |
119.9 |
119.9 |
| CZ |
CE2 |
HE2 |
120.1 |
120.1 |
| CE1 |
CD1 |
HD1 |
119.5 |
119.9 |
| CE2 |
CD2 |
HD2 |
119.3 |
120.0 |
Torsion Angles for RTY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C |
O |
H5 |
120.5 |
120.0 |
| CA |
C |
O |
H5 |
240.9 |
240.0 |
| H5 |
C |
O |
HO |
59.5 |
180.0 |
| N |
CA |
C |
H5 |
180.7 |
180.0 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| CB |
CA |
N |
HA |
121.5 |
120.0 |
| N |
CA |
CB |
HB |
79.9 |
55.0 |
| N |
CA |
CB |
HBA |
199.9 |
175.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
CB |
62.0 |
176.0 |
| H |
N |
CA |
HA |
300.4 |
56.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
CB |
182.0 |
300.0 |
| H2 |
N |
CA |
HA |
60.4 |
180.0 |
| HO |
O |
C |
H5 |
59.5 |
180.0 |
| C4 |
C1 |
H1 |
H1A |
118.0 |
120.0 |
| OH |
C1 |
H1 |
H1A |
242.1 |
240.0 |
| C4 |
C1 |
H1A |
H1 |
242.0 |
240.0 |
| OH |
C1 |
H1A |
H1 |
117.9 |
120.0 |
| C3 |
C2 |
O2 |
H20 |
180.0 |
180.0 |
| H3 |
C3 |
C2 |
O2 |
332.6 |
300.0 |
| C4 |
C3 |
H3 |
H3A |
241.9 |
240.0 |
| H3A |
C3 |
C2 |
O2 |
92.6 |
60.0 |
| C4 |
C3 |
H3A |
H3 |
118.1 |
119.9 |
| H1 |
C1 |
C4 |
H1A |
240.0 |
240.0 |
| OH |
C1 |
C4 |
H1 |
240.0 |
240.0 |
| OH |
C1 |
C4 |
H1A |
120.0 |
119.9 |
| C3 |
C4 |
C1 |
H1 |
173.0 |
300.0 |
| C3 |
C4 |
C1 |
H1A |
293.0 |
60.0 |
| C4 |
C3 |
C2 |
O2 |
212.6 |
180.0 |
| H3 |
C3 |
C4 |
H3A |
120.0 |
119.9 |
| H4 |
C4 |
C1 |
H1 |
293.1 |
60.0 |
| H4 |
C4 |
C1 |
H1A |
53.0 |
180.1 |
| H4 |
C4 |
C3 |
H3 |
183.9 |
300.0 |
| H4 |
C4 |
C3 |
H3A |
63.9 |
180.0 |
| H4A |
C4 |
C1 |
H1 |
53.0 |
180.0 |
| H4A |
C4 |
C1 |
H1A |
173.0 |
300.1 |
| H4A |
C4 |
C3 |
H3 |
63.9 |
179.9 |
| H4A |
C4 |
C3 |
H3A |
303.9 |
60.0 |
| O |
C |
C6 |
H5 |
240.9 |
240.0 |
| C6 |
C |
O |
HO |
180.0 |
300.0 |
| CA |
C |
C6 |
H5 |
119.1 |
120.0 |
| BR1 |
C6 |
C |
H5 |
337.2 |
55.0 |
| H6 |
C6 |
BR1 |
H6A |
120.0 |
119.9 |
| H6 |
C6 |
C |
H5 |
97.2 |
175.0 |
| BR1 |
C6 |
H6 |
H6A |
240.0 |
240.1 |
| H6A |
C6 |
C |
H5 |
217.2 |
295.0 |
| BR1 |
C6 |
H6A |
H6 |
120.0 |
119.9 |
| O |
C |
CA |
H5 |
119.1 |
119.9 |
| CA |
C |
O |
HO |
300.4 |
60.0 |
| C6 |
C |
CA |
H5 |
239.5 |
240.0 |
| CB |
CA |
C |
H5 |
298.4 |
300.0 |
| CB |
CA |
N |
H |
62.0 |
176.0 |
| CB |
CA |
N |
H2 |
182.0 |
300.0 |
| N |
CA |
CB |
HA |
239.4 |
240.0 |
| HB |
CB |
CA |
HBA |
240.0 |
240.0 |
| CG |
CB |
CA |
HB |
240.0 |
240.0 |
| CG |
CB |
CA |
HBA |
120.0 |
120.0 |
| HA |
CA |
C |
H5 |
60.0 |
60.1 |
| HA |
CA |
N |
H |
300.4 |
56.0 |
| HA |
CA |
N |
H2 |
60.4 |
180.0 |
| N |
CA |
HA |
CB |
119.5 |
120.0 |
| HA |
CA |
CB |
HB |
200.5 |
175.0 |
| HA |
CA |
CB |
HBA |
320.5 |
295.0 |
| HB |
CB |
CA |
HA |
200.5 |
175.0 |
| CA |
CB |
HB |
HBA |
119.7 |
119.9 |
| CG |
CB |
HB |
HBA |
240.3 |
240.0 |
| HBA |
CB |
CA |
HA |
320.5 |
295.0 |
| CA |
CB |
HBA |
HB |
240.3 |
240.0 |
| CG |
CB |
HBA |
HB |
119.7 |
120.0 |
| CG |
CB |
CA |
HA |
80.5 |
55.0 |
| CA |
CB |
CG |
HB |
120.0 |
120.0 |
| CA |
CB |
CG |
HBA |
240.0 |
240.0 |
| HB |
CB |
CG |
HBA |
120.0 |
120.0 |
| CD2 |
CG |
CB |
HB |
342.0 |
330.0 |
| CD2 |
CG |
CB |
HBA |
222.0 |
210.0 |
| CZ |
CE2 |
CD2 |
CG |
0.2 |
360.0 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
| H1 |
C1 |
OH |
H1A |
119.9 |
120.0 |
| C4 |
C1 |
OH |
H1 |
120.0 |
120.0 |
| C4 |
C1 |
OH |
H1A |
240.0 |
240.0 |
| CZ |
OH |
C1 |
H1 |
119.7 |
60.0 |
| CZ |
OH |
C1 |
H1A |
359.8 |
300.0 |
| CE1 |
CZ |
OH |
CE2 |
175.1 |
179.7 |
| OH |
CZ |
CE2 |
CD2 |
173.7 |
180.0 |
| OH |
CZ |
CE2 |
HE2 |
353.8 |
359.6 |
| CZ |
CE2 |
CD2 |
HD2 |
180.2 |
180.0 |
| CD1 |
CG |
CB |
HB |
172.4 |
150.3 |
| CD1 |
CG |
CB |
HBA |
52.4 |
30.3 |
| CD1 |
CG |
CD2 |
HD2 |
181.4 |
179.7 |
| HD1 |
CD1 |
CG |
CD2 |
178.2 |
180.2 |
| OH |
CZ |
CE1 |
CE2 |
184.9 |
180.3 |
| CE1 |
CZ |
CE2 |
CD2 |
358.5 |
0.3 |
| CE1 |
CZ |
CE2 |
HE2 |
178.6 |
179.9 |
| CD1 |
CE1 |
CZ |
CE2 |
1.0 |
359.7 |
| HE1 |
CE1 |
CZ |
CE2 |
181.0 |
180.0 |
| HE1 |
CE1 |
CD1 |
HD1 |
0.6 |
359.8 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
179.6 |
| CZ |
CE2 |
HE2 |
CD2 |
180.0 |
180.4 |
| HE2 |
CE2 |
CD2 |
HD2 |
0.2 |
0.4 |