PDB Chemical Component RTM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RTM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C7 |
N1 |
1.347 |
1.317 |
| N1 |
C6 |
1.338 |
1.337 |
| C12 |
N3 |
1.331 |
1.349 |
| C14 |
N3 |
1.471 |
1.465 |
| N3 |
C13 |
1.485 |
1.465 |
| C5 |
C4 |
1.401 |
1.403 |
| C4 |
C1 |
1.404 |
1.362 |
| C4 |
H4 |
1.080 |
1.079 |
| C6 |
C5 |
1.398 |
1.416 |
| C9 |
C5 |
1.394 |
1.410 |
| C6 |
C3 |
1.389 |
1.406 |
| N2 |
C7 |
1.335 |
1.387 |
| C7 |
C8 |
1.424 |
1.403 |
| C10 |
C8 |
1.572 |
1.507 |
| C8 |
C9 |
1.403 |
1.362 |
| C11 |
C10 |
1.556 |
1.529 |
| C10 |
H10 |
1.100 |
1.090 |
| C10 |
H10A |
1.100 |
1.090 |
| C13 |
H13 |
1.100 |
1.090 |
| C13 |
H13A |
1.100 |
1.090 |
| C13 |
H13B |
1.100 |
1.090 |
| C14 |
C15 |
1.532 |
1.529 |
| C16 |
C15 |
1.537 |
1.530 |
| C15 |
H15 |
1.100 |
1.090 |
| C15 |
H15A |
1.100 |
1.090 |
| C18 |
C17 |
1.556 |
1.530 |
| C17 |
C16 |
1.555 |
1.530 |
| C17 |
H17 |
1.100 |
1.090 |
| C17 |
H17A |
1.100 |
1.090 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.091 |
| C18 |
C19 |
1.535 |
1.530 |
| C18 |
H18 |
1.100 |
1.089 |
| C18 |
H18A |
1.100 |
1.090 |
| C19 |
C14 |
1.509 |
1.530 |
| C19 |
H19 |
1.100 |
1.090 |
| C19 |
H19A |
1.100 |
1.090 |
| C14 |
H14 |
1.100 |
1.089 |
| O1 |
C12 |
1.237 |
1.213 |
| C12 |
C11 |
1.504 |
1.507 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.100 |
1.090 |
| C9 |
H9 |
1.080 |
1.080 |
| C2 |
C1 |
1.396 |
1.393 |
| C1 |
H1 |
1.080 |
1.081 |
| C3 |
C2 |
1.393 |
1.361 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
H3 |
1.080 |
1.080 |
| N2 |
HN2 |
1.000 |
0.970 |
| N2 |
HN2A |
1.000 |
0.971 |
Bond Angles for RTM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C6 |
C5 |
120.2 |
119.9 |
| N1 |
C6 |
C3 |
120.1 |
121.0 |
| N3 |
C13 |
H13 |
109.5 |
109.5 |
| N3 |
C13 |
H13A |
109.5 |
109.5 |
| N3 |
C13 |
H13B |
109.5 |
109.5 |
| C5 |
C4 |
C1 |
119.5 |
119.6 |
| C5 |
C4 |
H4 |
120.2 |
120.2 |
| C1 |
C4 |
H4 |
120.3 |
120.2 |
| C4 |
C1 |
H1 |
119.8 |
119.6 |
| C6 |
C3 |
C2 |
121.1 |
119.8 |
| C6 |
C3 |
H3 |
119.5 |
120.1 |
| C7 |
C8 |
C9 |
116.5 |
119.9 |
| C10 |
C8 |
C9 |
116.4 |
120.1 |
| C8 |
C9 |
H9 |
119.7 |
120.8 |
| C11 |
C10 |
H10 |
107.6 |
109.4 |
| C11 |
C10 |
H10A |
107.5 |
109.5 |
| H10 |
C10 |
H10A |
111.3 |
109.5 |
| H13 |
C13 |
H13A |
109.4 |
109.5 |
| H13 |
C13 |
H13B |
109.5 |
109.5 |
| H13A |
C13 |
H13B |
109.5 |
109.5 |
| C14 |
C15 |
H15 |
110.5 |
109.5 |
| C14 |
C15 |
H15A |
110.4 |
109.5 |
| C16 |
C15 |
H15 |
110.4 |
109.5 |
| C16 |
C15 |
H15A |
110.5 |
109.5 |
| H15 |
C15 |
H15A |
108.5 |
109.4 |
| C18 |
C17 |
H17 |
107.0 |
109.5 |
| C18 |
C17 |
H17A |
107.0 |
109.5 |
| C16 |
C17 |
H17 |
107.0 |
109.5 |
| C16 |
C17 |
H17A |
107.0 |
109.4 |
| C17 |
C16 |
H16 |
108.4 |
109.5 |
| C17 |
C16 |
H16A |
108.5 |
109.4 |
| H17 |
C17 |
H17A |
111.8 |
109.5 |
| H16 |
C16 |
H16A |
110.5 |
109.5 |
| C19 |
C18 |
H18 |
108.2 |
109.5 |
| C19 |
C18 |
H18A |
108.2 |
109.4 |
| C18 |
C19 |
C14 |
102.3 |
109.4 |
| C18 |
C19 |
H19 |
111.9 |
109.5 |
| C18 |
C19 |
H19A |
111.9 |
109.5 |
| H18 |
C18 |
H18A |
110.7 |
109.5 |
| C14 |
C19 |
H19 |
111.9 |
109.5 |
| C14 |
C19 |
H19A |
111.9 |
109.5 |
| C19 |
C14 |
H14 |
102.6 |
109.5 |
| H19 |
C19 |
H19A |
106.9 |
109.4 |
| O1 |
C12 |
C11 |
118.5 |
120.0 |
| C12 |
C11 |
H11 |
111.5 |
109.5 |
| C12 |
C11 |
H11A |
111.5 |
109.5 |
| H11 |
C11 |
H11A |
107.3 |
109.5 |
| C2 |
C1 |
H1 |
119.8 |
119.6 |
| C3 |
C2 |
H2 |
120.4 |
119.5 |
| HN2 |
N2 |
HN2A |
109.4 |
120.0 |
Torsion Angles for RTM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C7 |
N1 |
C6 |
C3 |
180.1 |
180.0 |
| N1 |
C6 |
C3 |
C2 |
179.8 |
180.0 |
| N1 |
C6 |
C3 |
H3 |
359.8 |
0.0 |
| C12 |
N3 |
C13 |
H13 |
180.0 |
270.0 |
| C12 |
N3 |
C13 |
H13A |
300.0 |
30.0 |
| C12 |
N3 |
C13 |
H13B |
60.0 |
150.0 |
| C14 |
N3 |
C13 |
H13 |
353.7 |
90.0 |
| C14 |
N3 |
C13 |
H13A |
113.6 |
210.0 |
| C14 |
N3 |
C13 |
H13B |
233.7 |
330.0 |
| H13 |
C13 |
N3 |
H13A |
240.0 |
240.0 |
| H13 |
C13 |
N3 |
H13B |
120.0 |
120.0 |
| H13A |
C13 |
N3 |
H13B |
240.0 |
240.0 |
| N1 |
C6 |
C5 |
C4 |
180.2 |
180.0 |
| C1 |
C4 |
C5 |
H4 |
180.0 |
179.9 |
| C5 |
C4 |
C1 |
H1 |
180.3 |
180.0 |
| C5 |
C4 |
C1 |
H4 |
180.0 |
180.1 |
| C2 |
C1 |
C4 |
H1 |
180.0 |
180.1 |
| C5 |
C4 |
H4 |
C1 |
180.0 |
179.9 |
| H4 |
C4 |
C1 |
H1 |
0.3 |
359.9 |
| N1 |
C6 |
C5 |
C3 |
179.6 |
180.0 |
| C6 |
C5 |
C4 |
C1 |
359.6 |
359.9 |
| C6 |
C5 |
C4 |
H4 |
179.6 |
180.0 |
| C9 |
C5 |
C4 |
C1 |
180.0 |
180.0 |
| C9 |
C5 |
C4 |
H4 |
0.0 |
0.1 |
| N1 |
C6 |
C3 |
C5 |
180.4 |
180.0 |
| C6 |
C3 |
C2 |
H2 |
180.5 |
180.0 |
| C10 |
C8 |
C7 |
C9 |
179.4 |
180.0 |
| C7 |
C8 |
C9 |
H9 |
179.9 |
180.0 |
| C7 |
C8 |
C10 |
C9 |
180.6 |
180.0 |
| C10 |
C8 |
C9 |
H9 |
0.5 |
0.0 |
| C11 |
C10 |
C8 |
C9 |
286.7 |
100.0 |
| H10 |
C10 |
C11 |
H10A |
120.0 |
120.0 |
| H10 |
C10 |
C8 |
C9 |
46.7 |
220.0 |
| C11 |
C10 |
H10 |
H10A |
242.4 |
240.0 |
| H10A |
C10 |
C8 |
C9 |
166.7 |
340.0 |
| C11 |
C10 |
H10A |
H10 |
117.6 |
120.0 |
| N3 |
C13 |
H13 |
H13A |
120.0 |
120.0 |
| N3 |
C13 |
H13 |
H13B |
240.0 |
240.0 |
| H13A |
C13 |
H13 |
H13B |
120.0 |
120.0 |
| N3 |
C13 |
H13A |
H13 |
240.0 |
240.0 |
| N3 |
C13 |
H13A |
H13B |
120.0 |
120.0 |
| H13 |
C13 |
H13A |
H13B |
240.0 |
240.0 |
| N3 |
C13 |
H13B |
H13 |
120.0 |
120.0 |
| N3 |
C13 |
H13B |
H13A |
240.0 |
240.0 |
| H13 |
C13 |
H13B |
H13A |
119.9 |
120.0 |
| C16 |
C15 |
C14 |
H15 |
240.0 |
120.0 |
| C16 |
C15 |
C14 |
H15A |
120.0 |
240.0 |
| H15 |
C15 |
C14 |
H15A |
240.0 |
120.0 |
| C14 |
C15 |
C16 |
H15 |
120.0 |
240.0 |
| C14 |
C15 |
C16 |
H15A |
240.0 |
120.0 |
| H15 |
C15 |
C16 |
H15A |
120.0 |
240.1 |
| C14 |
C15 |
H15 |
H15A |
121.2 |
240.0 |
| C16 |
C15 |
H15 |
H15A |
238.8 |
120.0 |
| C14 |
C15 |
H15A |
H15 |
238.8 |
120.1 |
| C16 |
C15 |
H15A |
H15 |
121.2 |
240.0 |
| C16 |
C17 |
C18 |
H17 |
240.0 |
120.0 |
| C16 |
C17 |
C18 |
H17A |
120.0 |
240.0 |
| C18 |
C17 |
C16 |
H16 |
275.0 |
300.0 |
| C18 |
C17 |
C16 |
H16A |
155.0 |
180.0 |
| H17 |
C17 |
C18 |
H17A |
240.0 |
120.0 |
| C17 |
C16 |
C15 |
H15 |
192.8 |
60.0 |
| C17 |
C16 |
C15 |
H15A |
72.8 |
180.0 |
| C18 |
C17 |
C16 |
H17 |
120.0 |
240.0 |
| C18 |
C17 |
C16 |
H17A |
240.0 |
120.0 |
| H17 |
C17 |
C16 |
H17A |
120.0 |
240.0 |
| H16 |
C16 |
C17 |
H16A |
120.0 |
120.0 |
| C18 |
C17 |
H17 |
H17A |
116.9 |
240.0 |
| C16 |
C17 |
H17 |
H17A |
243.2 |
120.0 |
| H17 |
C17 |
C16 |
H16 |
154.9 |
60.0 |
| H17 |
C17 |
C16 |
H16A |
35.0 |
300.0 |
| C18 |
C17 |
H17A |
H17 |
243.1 |
120.0 |
| C16 |
C17 |
H17A |
H17 |
116.8 |
240.0 |
| H17A |
C17 |
C16 |
H16 |
35.0 |
180.0 |
| H17A |
C17 |
C16 |
H16A |
275.0 |
60.0 |
| H16 |
C16 |
C15 |
H15 |
312.8 |
180.1 |
| H16 |
C16 |
C15 |
H15A |
192.8 |
300.0 |
| H16 |
C16 |
C17 |
H17 |
154.9 |
60.0 |
| H16 |
C16 |
C17 |
H17A |
35.0 |
180.0 |
| C17 |
C16 |
H16 |
H16A |
241.3 |
240.0 |
| H16A |
C16 |
C15 |
H15 |
72.8 |
300.0 |
| H16A |
C16 |
C15 |
H15A |
312.8 |
60.0 |
| H16A |
C16 |
C17 |
H17 |
35.0 |
300.0 |
| H16A |
C16 |
C17 |
H17A |
275.0 |
60.0 |
| C17 |
C16 |
H16A |
H16 |
118.7 |
120.0 |
| C19 |
C18 |
C17 |
H17 |
79.9 |
180.0 |
| C19 |
C18 |
C17 |
H17A |
199.9 |
60.0 |
| H18 |
C18 |
C19 |
H18A |
120.0 |
120.0 |
| C14 |
C19 |
C18 |
H19 |
240.0 |
240.0 |
| C14 |
C19 |
C18 |
H19A |
120.0 |
120.0 |
| C18 |
C19 |
C14 |
H14 |
43.1 |
60.1 |
| H19 |
C19 |
C18 |
H19A |
240.0 |
240.1 |
| H18 |
C18 |
C17 |
H17 |
199.9 |
300.0 |
| H18 |
C18 |
C17 |
H17A |
319.9 |
180.0 |
| C19 |
C18 |
H18 |
H18A |
241.6 |
240.0 |
| H18 |
C18 |
C19 |
C14 |
295.6 |
300.0 |
| H18 |
C18 |
C19 |
H19 |
55.6 |
60.0 |
| H18 |
C18 |
C19 |
H19A |
175.7 |
179.9 |
| H18A |
C18 |
C17 |
H17 |
319.9 |
60.0 |
| H18A |
C18 |
C17 |
H17A |
79.9 |
300.0 |
| C19 |
C18 |
H18A |
H18 |
118.4 |
120.0 |
| H18A |
C18 |
C19 |
C14 |
175.7 |
180.0 |
| H18A |
C18 |
C19 |
H19 |
295.6 |
300.0 |
| H18A |
C18 |
C19 |
H19A |
55.7 |
60.0 |
| C19 |
C14 |
C15 |
H15 |
191.7 |
300.0 |
| C19 |
C14 |
C15 |
H15A |
311.8 |
180.0 |
| C14 |
C19 |
C18 |
H18 |
295.6 |
300.0 |
| C14 |
C19 |
C18 |
H18A |
175.7 |
180.0 |
| C18 |
C19 |
C14 |
H19 |
120.0 |
120.0 |
| C18 |
C19 |
C14 |
H19A |
240.0 |
240.0 |
| H19 |
C19 |
C14 |
H19A |
120.0 |
120.0 |
| H19 |
C19 |
C18 |
H18 |
55.6 |
60.0 |
| H19 |
C19 |
C18 |
H18A |
295.6 |
300.0 |
| C18 |
C19 |
H19 |
C14 |
245.8 |
240.0 |
| C18 |
C19 |
H19 |
H19A |
122.9 |
120.0 |
| C14 |
C19 |
H19 |
H19A |
237.1 |
240.0 |
| H19 |
C19 |
C14 |
H14 |
283.1 |
300.1 |
| H19A |
C19 |
C18 |
H18 |
175.7 |
179.9 |
| H19A |
C19 |
C18 |
H18A |
55.7 |
60.0 |
| C18 |
C19 |
H19A |
C14 |
114.2 |
120.0 |
| C18 |
C19 |
H19A |
H19 |
237.1 |
240.0 |
| C14 |
C19 |
H19A |
H19 |
122.9 |
120.1 |
| H19A |
C19 |
C14 |
H14 |
163.1 |
180.1 |
| H14 |
C14 |
C15 |
H15 |
78.8 |
180.0 |
| H14 |
C14 |
C15 |
H15A |
198.8 |
60.0 |
| H14 |
C14 |
C19 |
H19 |
283.1 |
300.1 |
| H14 |
C14 |
C19 |
H19A |
163.1 |
180.1 |
| O1 |
C12 |
C11 |
H11 |
184.6 |
240.0 |
| O1 |
C12 |
C11 |
H11A |
64.6 |
120.1 |
| C12 |
C11 |
C10 |
H10 |
215.4 |
60.0 |
| C12 |
C11 |
C10 |
H10A |
95.4 |
300.0 |
| H11 |
C11 |
C12 |
H11A |
120.0 |
120.0 |
| H11 |
C11 |
C10 |
H10 |
335.3 |
180.0 |
| H11 |
C11 |
C10 |
H10A |
215.3 |
60.0 |
| C12 |
C11 |
H11 |
H11A |
237.6 |
240.0 |
| H11A |
C11 |
C10 |
H10 |
95.4 |
300.0 |
| H11A |
C11 |
C10 |
H10A |
335.4 |
180.0 |
| C12 |
C11 |
H11A |
H11 |
122.4 |
120.0 |
| C2 |
C1 |
C4 |
H4 |
180.3 |
180.0 |
| C4 |
C1 |
C2 |
H1 |
180.0 |
179.9 |
| C6 |
C3 |
C2 |
C1 |
0.5 |
0.1 |
| H1 |
C1 |
C4 |
H4 |
0.3 |
359.9 |
| C6 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
H1 |
179.6 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
359.6 |
0.1 |
| C6 |
C3 |
H3 |
C2 |
180.0 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
0.5 |
359.9 |