PDB Chemical Component RTH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RTH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C5 |
C4 |
1.382 |
1.401 |
| C4 |
C1 |
1.396 |
1.385 |
| C4 |
H4 |
1.080 |
1.079 |
| C6 |
C5 |
1.392 |
1.417 |
| C10 |
C5 |
1.397 |
1.412 |
| N7 |
C6 |
1.349 |
1.337 |
| C6 |
C3 |
1.388 |
1.407 |
| N17 |
C8 |
1.332 |
1.386 |
| C8 |
N7 |
1.354 |
1.318 |
| C8 |
C9 |
1.399 |
1.403 |
| C9 |
C10 |
1.397 |
1.362 |
| C10 |
H10 |
1.080 |
1.080 |
| C12 |
C13 |
1.400 |
1.394 |
| C13 |
C14 |
1.399 |
1.380 |
| C13 |
H13 |
1.080 |
1.080 |
| C16 |
C15 |
1.398 |
1.381 |
| C15 |
C14 |
1.398 |
1.384 |
| C15 |
H15 |
1.080 |
1.081 |
| C21 |
C20 |
1.542 |
1.529 |
| C22 |
C20 |
1.525 |
1.531 |
| C23 |
C20 |
1.536 |
1.530 |
| C20 |
C19 |
1.488 |
1.472 |
| C21 |
H21 |
1.099 |
1.090 |
| C21 |
H21A |
1.100 |
1.089 |
| C21 |
H21B |
1.100 |
1.090 |
| C22 |
H22 |
1.100 |
1.090 |
| C22 |
H22A |
1.100 |
1.089 |
| C22 |
H22B |
1.100 |
1.090 |
| C23 |
H23 |
1.100 |
1.089 |
| C23 |
H23A |
1.100 |
1.090 |
| C23 |
H23B |
1.100 |
1.091 |
| C19 |
C18 |
1.267 |
1.175 |
| C18 |
C12 |
1.441 |
1.432 |
| C11 |
C12 |
1.403 |
1.407 |
| C14 |
H14 |
1.080 |
1.080 |
| C11 |
C16 |
1.402 |
1.392 |
| C16 |
H16 |
1.080 |
1.080 |
| C1 |
C11 |
1.404 |
1.482 |
| C2 |
C1 |
1.389 |
1.404 |
| C9 |
H9 |
1.080 |
1.081 |
| N17 |
HN17 |
1.000 |
0.970 |
| N17 |
HN1A |
1.000 |
0.970 |
| C3 |
C2 |
1.394 |
1.358 |
| C3 |
H3 |
1.080 |
1.080 |
| C2 |
H2 |
1.080 |
1.080 |
Bond Angles for RTH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C4 |
C1 |
121.2 |
119.4 |
| C5 |
C4 |
H4 |
119.4 |
120.3 |
| C1 |
C4 |
H4 |
119.4 |
120.3 |
| C4 |
C1 |
C11 |
119.4 |
119.8 |
| N7 |
C6 |
C3 |
120.2 |
120.8 |
| C6 |
C3 |
C2 |
121.2 |
120.1 |
| C6 |
C3 |
H3 |
119.4 |
119.9 |
| N17 |
C8 |
N7 |
119.6 |
119.2 |
| C9 |
C8 |
N7 |
120.6 |
121.5 |
| C8 |
C9 |
C10 |
118.9 |
119.9 |
| C8 |
C9 |
H9 |
120.5 |
120.0 |
| C9 |
C10 |
H10 |
120.4 |
120.8 |
| C12 |
C13 |
C14 |
119.0 |
120.0 |
| C12 |
C13 |
H13 |
120.5 |
120.0 |
| C14 |
C13 |
H13 |
120.5 |
120.0 |
| C13 |
C14 |
C15 |
120.3 |
120.4 |
| C13 |
C14 |
H14 |
119.8 |
119.8 |
| C16 |
C15 |
H15 |
119.6 |
119.8 |
| C14 |
C15 |
H15 |
119.6 |
119.8 |
| C15 |
C14 |
H14 |
119.8 |
119.8 |
| C21 |
C20 |
C19 |
108.7 |
109.5 |
| C22 |
C20 |
C19 |
109.3 |
109.5 |
| C23 |
C20 |
C19 |
106.4 |
109.5 |
| C20 |
C19 |
C18 |
178.6 |
179.9 |
| H21 |
C21 |
H21A |
109.5 |
109.5 |
| H21 |
C21 |
H21B |
109.5 |
109.4 |
| H21A |
C21 |
H21B |
109.5 |
109.5 |
| H22 |
C22 |
H22A |
109.5 |
109.5 |
| H22 |
C22 |
H22B |
109.5 |
109.5 |
| H22A |
C22 |
H22B |
109.5 |
109.5 |
| H23 |
C23 |
H23A |
109.5 |
109.5 |
| H23 |
C23 |
H23B |
109.5 |
109.5 |
| H23A |
C23 |
H23B |
109.5 |
109.4 |
| C19 |
C18 |
C12 |
177.8 |
179.9 |
| C11 |
C16 |
H16 |
120.5 |
120.0 |
| HN17 |
N17 |
HN1A |
109.5 |
120.0 |
| C2 |
C3 |
H3 |
119.4 |
120.0 |
| C3 |
C2 |
H2 |
120.3 |
119.6 |
Torsion Angles for RTH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C4 |
C5 |
H4 |
180.0 |
180.3 |
| C5 |
C4 |
C1 |
C11 |
181.7 |
179.7 |
| C5 |
C4 |
C1 |
H4 |
180.0 |
179.7 |
| C5 |
C4 |
H4 |
C1 |
180.0 |
180.3 |
| H4 |
C4 |
C1 |
C11 |
1.7 |
0.0 |
| C6 |
C5 |
C4 |
C1 |
358.4 |
360.0 |
| C6 |
C5 |
C4 |
H4 |
178.4 |
179.7 |
| C10 |
C5 |
C4 |
C1 |
180.0 |
180.0 |
| C10 |
C5 |
C4 |
H4 |
360.0 |
359.7 |
| N7 |
C6 |
C3 |
C2 |
179.9 |
180.3 |
| N7 |
C6 |
C3 |
H3 |
359.9 |
359.9 |
| C2 |
C3 |
C6 |
H3 |
180.0 |
180.3 |
| C6 |
C3 |
C2 |
H2 |
179.5 |
180.0 |
| C9 |
C8 |
N17 |
N7 |
180.7 |
179.9 |
| N17 |
C8 |
C9 |
H9 |
359.4 |
0.1 |
| C8 |
N7 |
C6 |
C3 |
181.2 |
180.0 |
| N7 |
C8 |
C9 |
C10 |
0.2 |
359.9 |
| N7 |
C8 |
C9 |
H9 |
180.2 |
180.0 |
| N17 |
C8 |
C9 |
N7 |
179.3 |
180.1 |
| C8 |
C9 |
C10 |
H10 |
180.2 |
180.0 |
| C10 |
C9 |
C8 |
N7 |
0.2 |
359.9 |
| C8 |
C9 |
C10 |
H9 |
180.0 |
180.1 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
180.2 |
| C12 |
C13 |
C14 |
C15 |
359.6 |
359.8 |
| C12 |
C13 |
C14 |
H14 |
179.6 |
179.7 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
179.8 |
| C13 |
C14 |
C15 |
H15 |
179.9 |
179.9 |
| C15 |
C14 |
C13 |
H14 |
180.0 |
180.1 |
| C12 |
C13 |
H13 |
C14 |
180.0 |
180.2 |
| H13 |
C13 |
C14 |
C15 |
179.6 |
179.9 |
| H13 |
C13 |
C14 |
H14 |
359.6 |
359.9 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
179.4 |
| C16 |
C15 |
C14 |
H14 |
180.0 |
180.6 |
| C15 |
C14 |
C13 |
H13 |
179.6 |
179.9 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
179.9 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
180.6 |
| H15 |
C15 |
C14 |
H14 |
359.9 |
0.0 |
| C22 |
C20 |
C21 |
C19 |
118.9 |
120.0 |
| C23 |
C20 |
C21 |
C19 |
243.4 |
240.0 |
| C21 |
C20 |
C19 |
C18 |
222.6 |
39.7 |
| C21 |
C20 |
C22 |
C19 |
241.5 |
240.0 |
| C23 |
C20 |
C22 |
C19 |
118.3 |
120.0 |
| C22 |
C20 |
C19 |
C18 |
104.2 |
279.7 |
| C21 |
C20 |
C23 |
C19 |
118.0 |
120.1 |
| C22 |
C20 |
C23 |
C19 |
240.1 |
240.0 |
| C23 |
C20 |
C19 |
C18 |
342.0 |
159.7 |
| C20 |
C19 |
C18 |
C12 |
179.4 |
174.9 |
| H21 |
C21 |
C20 |
C19 |
61.1 |
60.0 |
| H21A |
C21 |
H21 |
H21B |
120.0 |
120.0 |
| H21A |
C21 |
C20 |
C19 |
181.1 |
180.0 |
| H21 |
C21 |
H21A |
H21B |
240.0 |
240.1 |
| H21B |
C21 |
C20 |
C19 |
301.1 |
300.0 |
| H21 |
C21 |
H21B |
H21A |
120.0 |
120.0 |
| H22 |
C22 |
C20 |
C19 |
298.5 |
60.0 |
| H22A |
C22 |
H22 |
H22B |
120.0 |
120.1 |
| H22A |
C22 |
C20 |
C19 |
58.5 |
180.0 |
| H22 |
C22 |
H22A |
H22B |
240.0 |
239.9 |
| H22B |
C22 |
C20 |
C19 |
178.5 |
300.0 |
| H22 |
C22 |
H22B |
H22A |
120.0 |
120.1 |
| H23 |
C23 |
C20 |
C19 |
62.0 |
60.0 |
| H23A |
C23 |
H23 |
H23B |
120.0 |
119.9 |
| H23A |
C23 |
C20 |
C19 |
182.0 |
180.0 |
| H23 |
C23 |
H23A |
H23B |
240.0 |
240.0 |
| H23B |
C23 |
C20 |
C19 |
302.0 |
299.9 |
| H23 |
C23 |
H23B |
H23A |
120.0 |
120.0 |
| C18 |
C12 |
C13 |
C14 |
179.5 |
180.0 |
| C18 |
C12 |
C13 |
H13 |
359.5 |
359.8 |
| C4 |
C1 |
C11 |
C12 |
67.2 |
130.0 |
| C11 |
C12 |
C13 |
H13 |
180.6 |
179.8 |
| H14 |
C14 |
C13 |
H13 |
359.6 |
359.9 |
| C13 |
C14 |
H14 |
C15 |
180.0 |
180.1 |
| H14 |
C14 |
C15 |
H15 |
359.9 |
0.0 |
| C4 |
C1 |
C11 |
C16 |
247.9 |
310.0 |
| C11 |
C16 |
C15 |
H15 |
180.4 |
180.1 |
| H16 |
C16 |
C15 |
H15 |
0.4 |
0.5 |
| C11 |
C1 |
C4 |
H4 |
1.7 |
0.0 |
| C1 |
C11 |
C16 |
H16 |
359.2 |
359.8 |
| C2 |
C1 |
C4 |
H4 |
181.3 |
180.0 |
| C6 |
C3 |
C2 |
C1 |
359.5 |
359.4 |
| H9 |
C9 |
C8 |
N7 |
180.2 |
180.0 |
| C8 |
C9 |
H9 |
C10 |
180.0 |
179.9 |
| H9 |
C9 |
C10 |
H10 |
0.2 |
359.9 |
| HN17 |
N17 |
C8 |
N7 |
360.0 |
360.0 |
| HN1A |
N17 |
C8 |
N7 |
120.0 |
180.0 |
| C6 |
C3 |
C2 |
H3 |
180.0 |
179.7 |
| C6 |
C3 |
H3 |
C2 |
180.0 |
180.3 |
| H3 |
C3 |
C2 |
H2 |
359.5 |
0.3 |
| H2 |
C2 |
C3 |
H3 |
359.5 |
0.3 |