PDB Chemical Component RTB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RTB

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
RU N2 1.971  
RU N3 1.966  
RU N4 2.020  
RU N5 2.015  
RU N6 1.999  
N2 C7 1.354  
N2 C11 1.330  
N3 C12 1.348  
N3 C16 1.321  
N4 C17 1.336  
N4 C21 1.393  
N5 C22 1.398  
N5 C23 1.352  
N6 C27 1.378  
N6 C28 1.378  
C7 C8 1.368  
C7 H71 1.080  
C8 C9 1.403  
C8 H81 1.080  
C9 C10 1.380  
C9 H91 1.080  
C10 C11 1.378  
C10 C33 1.452  
C11 C21 1.430  
C12 C13 1.379  
C12 C22 1.451  
C13 C14 1.387  
C13 H131 1.080  
C14 C15 1.415  
C14 H141 1.080  
C15 C16 1.398  
C15 H151 1.080  
C16 C27 1.483  
C17 C18 1.410  
C17 H171 1.080  
C18 C19 1.369  
C18 H181 1.080  
C19 C20 1.384  
C19 H191 1.080  
C20 C21 1.393  
C20 C32 1.464  
C22 C26 1.410  
C23 C24 1.404  
C23 H231 1.080  
C24 C25 1.374  
C24 H241 1.080  
C25 C26 1.374  
C25 H251 1.080  
C26 H261 1.080  
C27 C31 1.376  
C28 C29 1.358  
C28 H281 1.080  
C29 C30 1.384  
C29 H291 1.080  
C30 C31 1.382  
C30 H301 1.080  
C31 H311 1.080  
C32 C33 1.374  
C32 H321 1.080  
C33 H331 1.080  

Bond Angles for RTB

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N2 RU N3 94.5  
N2 RU N4 82.9  
N2 RU N5 87.0  
N2 RU N6 94.4  
RU N2 C7 125.3  
RU N2 C11 114.9  
N3 RU N4 177.1  
N3 RU N5 80.0  
N3 RU N6 80.7  
RU N3 C12 119.1  
RU N3 C16 118.1  
N4 RU N5 98.7  
N4 RU N6 100.6  
RU N4 C17 132.3  
RU N4 C21 109.4  
N5 RU N6 160.7  
RU N5 C22 113.3  
RU N5 C23 128.2  
RU N6 C27 113.9  
RU N6 C28 128.4  
C7 N2 C11 119.8  
N2 C7 C8 122.0  
N2 C7 H71 119.0  
N2 C11 C10 121.6  
N2 C11 C21 115.0  
C12 N3 C16 122.8  
N3 C12 C13 120.0  
N3 C12 C22 112.0  
N3 C16 C15 121.2  
N3 C16 C27 113.0  
C17 N4 C21 118.2  
N4 C17 C18 122.2  
N4 C17 H171 118.9  
N4 C21 C11 117.8  
N4 C21 C20 121.0  
C22 N5 C23 118.5  
N5 C22 C12 115.6  
N5 C22 C26 119.7  
N5 C23 C24 122.8  
N5 C23 H231 118.6  
C27 N6 C28 117.6  
N6 C27 C16 114.3  
N6 C27 C31 121.5  
N6 C28 C29 122.6  
N6 C28 H281 118.7  
C8 C7 H71 119.0  
C7 C8 C9 118.2  
C7 C8 H81 120.9  
C9 C8 H81 120.9  
C8 C9 C10 119.3  
C8 C9 H91 120.4  
C10 C9 H91 120.3  
C9 C10 C11 119.2  
C9 C10 C33 124.8  
C11 C10 C33 116.1  
C10 C11 C21 123.3  
C10 C33 C32 121.3  
C10 C33 H331 119.3  
C11 C21 C20 121.2  
C13 C12 C22 128.1  
C12 C13 C14 118.5  
C12 C13 H131 120.7  
C12 C22 C26 124.7  
C14 C13 H131 120.7  
C13 C14 C15 121.0  
C13 C14 H141 119.5  
C15 C14 H141 119.5  
C14 C15 C16 116.5  
C14 C15 H151 121.8  
C16 C15 H151 121.7  
C15 C16 C27 125.8  
C16 C27 C31 124.3  
C18 C17 H171 118.9  
C17 C18 C19 119.4  
C17 C18 H181 120.3  
C19 C18 H181 120.3  
C18 C19 C20 119.5  
C18 C19 H191 120.2  
C20 C19 H191 120.2  
C19 C20 C21 119.6  
C19 C20 C32 124.6  
C21 C20 C32 115.8  
C20 C32 C33 122.2  
C20 C32 H321 118.9  
C22 C26 C25 120.2  
C22 C26 H261 119.9  
C24 C23 H231 118.6  
C23 C24 C25 118.5  
C23 C24 H241 120.8  
C25 C24 H241 120.7  
C24 C25 C26 120.4  
C24 C25 H251 119.8  
C26 C25 H251 119.8  
C25 C26 H261 119.9  
C27 C31 C30 119.2  
C27 C31 H311 120.4  
C29 C28 H281 118.7  
C28 C29 C30 118.8  
C28 C29 H291 120.6  
C30 C29 H291 120.6  
C29 C30 C31 120.3  
C29 C30 H301 119.9  
C31 C30 H301 119.9  
C30 C31 H311 120.4  
C33 C32 H321 118.9  
C32 C33 H331 119.3  

Torsion Angles for RTB

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N3 RU N2 N4 178.9  
N3 RU N2 N5 79.7  
N3 RU N2 N6 279.0  
N2 RU N3 C12 273.9  
N2 RU N3 C16 93.5  
N4 RU N2 N5 260.8  
N4 RU N2 N6 100.1  
N2 RU N4 C17 180.6  
N2 RU N4 C21 0.0  
N5 RU N2 N6 199.3  
N2 RU N5 C22 95.2  
N2 RU N5 C23 274.5  
N2 RU N6 C27 265.8  
N2 RU N6 C28 86.3  
C7 N2 RU C11 180.0  
RU N2 C7 C8 180.1  
RU N2 C7 H71 0.1  
RU N2 C11 C10 179.7  
RU N2 C11 C21 0.9  
N2 RU N3 N4 338.0  
N2 RU N3 N5 273.9  
N2 RU N3 N6 93.7  
N3 RU N2 C7 358.4  
N3 RU N2 C11 178.4  
N4 RU N3 N5 295.9  
N4 RU N3 N6 115.7  
N3 RU N4 C17 158.5  
N3 RU N4 C21 337.9  
N5 RU N3 N6 179.8  
N3 RU N5 C22 0.1  
N3 RU N5 C23 179.5  
N3 RU N6 C27 359.6  
N3 RU N6 C28 180.1  
C12 N3 RU C16 180.4  
RU N3 C12 C13 179.8  
RU N3 C12 C22 359.8  
RU N3 C16 C15 179.9  
RU N3 C16 C27 0.7  
N2 RU N4 N3 22.1  
N2 RU N4 N5 85.8  
N2 RU N4 N6 266.9  
N4 RU N2 C7 179.4  
N4 RU N2 C11 359.5  
N3 RU N4 N5 63.7  
N3 RU N4 N6 244.8  
N4 RU N3 C12 295.9  
N4 RU N3 C16 115.5  
N5 RU N4 N6 181.1  
N4 RU N5 C22 177.5  
N4 RU N5 C23 356.8  
N4 RU N6 C27 182.2  
N4 RU N6 C28 2.8  
C17 N4 RU C21 180.5  
RU N4 C17 C18 181.0  
RU N4 C17 H171 1.0  
RU N4 C21 C11 0.4  
RU N4 C21 C20 178.7  
N2 RU N5 N3 95.1  
N2 RU N5 N4 277.7  
N2 RU N5 N6 94.5  
N5 RU N2 C7 278.6  
N5 RU N2 C11 98.7  
N3 RU N5 N4 182.6  
N3 RU N5 N6 359.5  
N5 RU N3 C12 0.1  
N5 RU N3 C16 179.7  
N4 RU N5 N6 176.9  
N5 RU N4 C17 94.8  
N5 RU N4 C21 274.2  
N5 RU N6 C27 359.1  
N5 RU N6 C28 179.6  
C22 N5 RU C23 180.6  
RU N5 C22 C12 359.8  
RU N5 C22 C26 179.2  
RU N5 C23 C24 180.9  
RU N5 C23 H231 0.9  
N2 RU N6 N3 266.2  
N2 RU N6 N4 83.6  
N2 RU N6 N5 266.7  
N6 RU N2 C7 79.3  
N6 RU N2 C11 259.3  
N3 RU N6 N4 177.4  
N3 RU N6 N5 0.5  
N6 RU N3 C12 180.2  
N6 RU N3 C16 359.8  
N4 RU N6 N5 183.2  
N6 RU N4 C17 273.7  
N6 RU N4 C21 93.2  
N6 RU N5 C22 0.6  
N6 RU N5 C23 180.0  
C27 N6 RU C28 179.5  
RU N6 C27 C16 0.8  
RU N6 C27 C31 179.3  
RU N6 C28 C29 180.4  
RU N6 C28 H281 0.4  
C7 N2 RU N3 358.4  
C7 N2 RU N4 179.4  
C7 N2 RU N5 278.6  
C7 N2 RU N6 79.3  
RU N2 C7 C11 180.0  
C7 N2 C11 C10 359.8  
C7 N2 C11 C21 180.9  
C8 C7 N2 H71 180.0  
N2 C7 C8 C9 359.9  
N2 C7 C8 H81 179.9  
C11 N2 RU N3 178.4  
C11 N2 RU N4 359.5  
C11 N2 RU N5 98.7  
C11 N2 RU N6 259.3  
RU N2 C11 C7 180.0  
C11 N2 C7 C8 0.1  
C11 N2 C7 H71 180.1  
N4 C21 C11 N2 359.1  
C9 C10 C11 N2 0.4  
N2 C11 C10 C33 179.1  
C10 C11 N2 C21 178.8  
N2 C11 C21 C20 180.9  
C12 N3 RU N4 295.9  
C12 N3 RU N5 0.1  
C12 N3 RU N6 180.2  
RU N3 C12 C16 179.6  
C12 N3 C16 C15 359.5  
C12 N3 C16 C27 180.2  
N5 C22 C12 N3 0.3  
C13 C12 N3 C22 180.0  
N3 C12 C13 C14 0.0  
N3 C12 C13 H131 180.0  
N3 C12 C22 C26 180.8  
C16 N3 RU N4 115.5  
C16 N3 RU N5 179.7  
C16 N3 RU N6 359.8  
RU N3 C16 C12 180.4  
C16 N3 C12 C13 0.3  
C16 N3 C12 C22 180.2  
N6 C27 C16 N3 359.0  
C14 C15 C16 N3 0.4  
N3 C16 C15 H151 180.4  
C15 C16 N3 C27 179.3  
N3 C16 C27 C31 180.6  
C17 N4 RU N5 94.8  
C17 N4 RU N6 273.7  
RU N4 C17 C21 179.4  
C17 N4 C21 C11 180.0  
C17 N4 C21 C20 358.2  
C18 C17 N4 H171 180.0  
N4 C17 C18 C19 358.8  
N4 C17 C18 H181 178.8  
C21 N4 RU N5 274.2  
C21 N4 RU N6 93.2  
RU N4 C21 C17 180.4  
N2 C11 C21 N4 359.1  
C21 N4 C17 C18 1.6  
C21 N4 C17 H171 181.6  
C10 C11 C21 N4 180.3  
C11 C21 N4 C20 181.8  
C19 C20 C21 N4 1.7  
N4 C21 C20 C32 180.8  
C22 N5 RU N6 0.6  
RU N5 C22 C23 179.4  
N3 C12 C22 N5 0.3  
C22 N5 C23 C24 0.3  
C22 N5 C23 H231 180.2  
C13 C12 C22 N5 180.2  
C12 C22 N5 C26 180.5  
N5 C22 C26 C25 0.3  
N5 C22 C26 H261 180.2  
C23 N5 RU N6 180.0  
RU N5 C23 C22 180.7  
C23 N5 C22 C12 180.4  
C23 N5 C22 C26 359.8  
C24 C23 N5 H231 180.0  
N5 C23 C24 C25 359.6  
N5 C23 C24 H241 179.6  
RU N6 C27 C28 180.5  
N3 C16 C27 N6 359.0  
C27 N6 C28 C29 1.0  
C27 N6 C28 H281 181.0  
C15 C16 C27 N6 179.8  
C16 C27 N6 C31 181.5  
N6 C27 C31 C30 1.3  
N6 C27 C31 H311 181.3  
RU N6 C28 C27 179.5  
C28 N6 C27 C16 180.4  
C28 N6 C27 C31 358.9  
C29 C28 N6 H281 180.0  
N6 C28 C29 C30 359.0  
N6 C28 C29 H291 179.1  
C8 C7 N2 C11 0.1  
N2 C7 C8 H71 180.0  
C9 C8 C7 H81 180.0  
C7 C8 C9 C10 0.3  
C7 C8 C9 H91 180.3  
H71 C7 N2 C11 180.1  
N2 C7 H71 C8 180.0  
H71 C7 C8 C9 179.9  
H71 C7 C8 H81 359.8  
C9 C8 C7 H71 179.9  
C7 C8 C9 H81 180.0  
C10 C9 C8 H91 180.0  
C8 C9 C10 C11 359.5  
C8 C9 C10 C33 180.9  
H81 C8 C7 H71 359.8  
C7 C8 H81 C9 180.0  
H81 C8 C9 C10 180.4  
H81 C8 C9 H91 0.3  
N2 C11 C10 C9 0.4  
C10 C9 C8 H81 180.4  
C8 C9 C10 H91 180.0  
C11 C10 C9 C33 178.6  
C9 C10 C11 C21 179.2  
C9 C10 C33 C32 179.9  
C9 C10 C33 H331 359.9  
H91 C9 C8 H81 0.3  
C8 C9 H91 C10 180.0  
H91 C9 C10 C11 179.5  
H91 C9 C10 C33 1.0  
N2 C11 C10 C21 181.3  
N4 C21 C11 C10 180.3  
C11 C10 C9 H91 179.5  
C9 C10 C11 C33 181.3  
C11 C10 C33 C32 1.3  
C11 C10 C33 H331 181.3  
C10 C11 C21 C20 2.1  
C33 C10 C9 H91 1.0  
C9 C10 C33 C11 178.6  
C33 C10 C11 C21 357.9  
C20 C32 C33 C10 359.6  
C10 C33 C32 H321 179.6  
C32 C33 C10 H331 180.0  
N2 C11 C21 C10 178.8  
N4 C21 C11 C20 178.2  
C21 C11 C10 C33 357.9  
C19 C20 C21 C11 179.8  
C11 C21 C20 C32 359.0  
C13 C12 N3 C16 0.3  
N3 C12 C13 C22 180.0  
N5 C22 C12 C13 180.2  
C13 C12 C22 C26 0.8  
C14 C13 C12 H131 180.0  
C12 C13 C14 C15 359.9  
C12 C13 C14 H141 180.0  
C22 C12 N3 C16 180.2  
N3 C12 C22 C13 180.0  
C12 C22 N5 C23 180.4  
N5 C22 C12 C26 179.4  
C22 C12 C13 C14 180.0  
C22 C12 C13 H131 0.0  
C12 C22 C26 C25 179.7  
C12 C22 C26 H261 359.6  
C14 C13 C12 C22 180.0  
C12 C13 C14 H131 180.0  
C15 C14 C13 H141 180.0  
C13 C14 C15 C16 359.8  
C13 C14 C15 H151 179.9  
H131 C13 C12 C22 0.0  
C12 C13 H131 C14 180.0  
H131 C13 C14 C15 180.0  
H131 C13 C14 H141 360.0  
N3 C16 C15 C14 0.4  
C15 C14 C13 H131 180.0  
C13 C14 C15 H141 180.0  
C16 C15 C14 H151 180.0  
C14 C15 C16 C27 179.6  
H141 C14 C13 H131 360.0  
C13 C14 H141 C15 180.0  
H141 C14 C15 C16 179.8  
H141 C14 C15 H151 359.9  
N3 C16 C15 C27 180.8  
N6 C27 C16 C15 179.8  
C16 C15 C14 H141 179.8  
C14 C15 C16 H151 180.0  
C15 C16 C27 C31 1.3  
H151 C15 C14 H141 359.9  
C14 C15 H151 C16 180.0  
H151 C15 C16 C27 359.6  
N3 C16 C27 C15 179.2  
C16 C27 N6 C28 180.4  
N6 C27 C16 C31 178.4  
C27 C16 C15 H151 359.6  
C16 C27 C31 C30 179.6  
C16 C27 C31 H311 359.7  
C18 C17 N4 C21 1.6  
N4 C17 C18 H171 180.0  
C19 C18 C17 H181 180.0  
C17 C18 C19 C20 1.1  
C17 C18 C19 H191 181.0  
H171 C17 N4 C21 181.6  
N4 C17 H171 C18 180.0  
H171 C17 C18 C19 178.8  
H171 C17 C18 H181 358.8  
C19 C18 C17 H171 178.8  
C17 C18 C19 H181 180.0  
C20 C19 C18 H191 180.0  
C18 C19 C20 C21 358.7  
C18 C19 C20 C32 179.6  
H181 C18 C17 H171 358.8  
C17 C18 H181 C19 180.0  
H181 C18 C19 C20 181.1  
H181 C18 C19 H191 1.0  
N4 C21 C20 C19 1.7  
C11 C21 C20 C19 179.8  
C20 C19 C18 H181 181.1  
C18 C19 C20 H191 180.0  
C21 C20 C19 C32 179.1  
C19 C20 C32 C33 179.3  
C19 C20 C32 H321 359.3  
H191 C19 C18 H181 1.0  
C18 C19 H191 C20 180.0  
H191 C19 C20 C21 178.7  
H191 C19 C20 C32 359.6  
N4 C21 C20 C11 181.8  
C21 C20 C19 H191 178.7  
C19 C20 C21 C32 180.8  
C21 C20 C32 C33 0.2  
C21 C20 C32 H321 180.2  
C10 C33 C32 C20 359.6  
C32 C20 C19 H191 359.6  
C19 C20 C32 C21 179.1  
C33 C32 C20 H321 180.0  
C20 C32 C33 H331 179.6  
C26 C22 N5 C23 359.8  
N5 C22 C26 C12 180.6  
C24 C25 C26 C22 359.6  
C22 C26 C25 H251 179.6  
C25 C26 C22 H261 180.0  
N5 C23 C24 H231 180.0  
C25 C24 C23 H241 180.0  
C23 C24 C25 C26 0.5  
C23 C24 C25 H251 180.5  
N5 C23 H231 C24 180.0  
H231 C23 C24 C25 179.6  
H231 C23 C24 H241 359.6  
C22 C26 C25 C24 359.6  
C25 C24 C23 H231 179.6  
C23 C24 C25 H241 180.0  
C26 C25 C24 H251 180.0  
C24 C25 C26 H261 179.6  
H241 C24 C23 H231 359.6  
C23 C24 H241 C25 180.0  
H241 C24 C25 C26 180.5  
H241 C24 C25 H251 0.5  
C22 C26 C25 H261 180.0  
C26 C25 C24 H241 180.5  
C24 C25 C26 H251 180.0  
H251 C25 C24 H241 0.5  
C24 C25 H251 C26 180.0  
H251 C25 C26 H261 359.6  
C22 C26 H261 C25 180.0  
H261 C26 C25 H251 359.6  
C31 C27 N6 C28 358.9  
N6 C27 C31 C16 181.7  
C29 C30 C31 C27 358.7  
C27 C31 C30 H301 178.7  
C30 C31 C27 H311 180.0  
N6 C28 C29 H281 180.0  
C30 C29 C28 H291 180.0  
C28 C29 C30 C31 1.1  
C28 C29 C30 H301 181.1  
N6 C28 H281 C29 180.0  
H281 C28 C29 C30 179.0  
H281 C28 C29 H291 359.1  
C27 C31 C30 C29 358.7  
C30 C29 C28 H281 179.0  
C28 C29 C30 H291 180.0  
C31 C30 C29 H301 180.0  
C29 C30 C31 H311 178.7  
H291 C29 C28 H281 359.1  
C28 C29 H291 C30 180.0  
H291 C29 C30 C31 181.1  
H291 C29 C30 H301 1.1  
C27 C31 C30 H311 180.0  
C31 C30 C29 H291 181.1  
C29 C30 C31 H301 180.0  
H301 C30 C29 H291 1.1  
C29 C30 H301 C31 180.0  
H301 C30 C31 H311 358.7  
C27 C31 H311 C30 180.0  
H311 C31 C30 H301 358.7  
C10 C33 C32 H331 180.0  
C20 C32 C33 H321 180.0  
C20 C32 H321 C33 180.0  
H321 C32 C33 H331 359.6  
C10 C33 H331 C32 180.0  
H331 C33 C32 H321 359.6