PDB Chemical Component RSP

Ideal Model

Chemical Description

Name 4-amino-1-(5-O-phosphono-beta-D-ribofuranosyl)pyrimidine-2(1H)-thione
Formula C9 H14 N3 O7 P S
Formal charge 0
Molecular weight 339.262 g/mol
Component type RNA LINKING
Nonstandard Parent Id C

Chemical features

Atom count 35
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 36
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(4-azanyl-2-sulfanylidene-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=S)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
SMILES (CACTVS) NC1=NC(=S)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) C1=CN(C(=S)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C9H14N3O7PS/c10-5-1-2-12(9(21)11-5)8-7(14)6(13)4(19-8)3-18-20(15,16)17/h1-2,4,6-8,13-14H,3H2,(H2,10,11,21)(H2,15,16,17)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor BPWVHBCPZTVLLY-XVFCMESISA-N

Status Information

Last modified 2019-12-05
Created 2010-01-11
Release status REL
Model PDB code 2KRV
Processing site RCSB