PDB Chemical Component RSP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RSP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP1 |
P |
1.485 |
1.480 |
| OP3 |
P |
1.609 |
1.610 |
| P |
OP2 |
1.486 |
1.610 |
| P |
O5' |
1.594 |
1.610 |
| C6 |
N1 |
1.368 |
1.363 |
| N1 |
C2 |
1.399 |
1.345 |
| N1 |
C1' |
1.473 |
1.466 |
| N3 |
C2 |
1.353 |
1.332 |
| C2 |
S2 |
1.676 |
1.712 |
| C4 |
N3 |
1.336 |
1.327 |
| N4 |
C4 |
1.334 |
1.375 |
| C5 |
C4 |
1.425 |
1.411 |
| HN4 |
N4 |
1.000 |
0.970 |
| N4 |
HN4A |
1.000 |
0.971 |
| H5 |
C5 |
1.080 |
1.080 |
| C5 |
C6 |
1.338 |
1.354 |
| H6 |
C6 |
1.080 |
1.080 |
| O4' |
C1' |
1.415 |
1.444 |
| C1' |
H1' |
1.100 |
1.090 |
| C1' |
C2' |
1.530 |
1.550 |
| C3' |
C2' |
1.528 |
1.548 |
| C2' |
H2' |
1.100 |
1.090 |
| C2' |
O2' |
1.415 |
1.429 |
| O2' |
HO2' |
0.950 |
0.967 |
| C4' |
C3' |
1.522 |
1.541 |
| H3' |
C3' |
1.100 |
1.091 |
| C3' |
O3' |
1.426 |
1.429 |
| O3' |
HO3' |
0.950 |
0.966 |
| C5' |
C4' |
1.511 |
1.530 |
| O4' |
C4' |
1.452 |
1.438 |
| C4' |
H4' |
1.100 |
1.090 |
| O5' |
C5' |
1.428 |
1.429 |
| H5'A |
C5' |
1.100 |
1.090 |
| C5' |
H5' |
1.100 |
1.090 |
| OP2 |
HOP2 |
0.950 |
0.968 |
| OP3 |
HOP3 |
0.950 |
0.967 |
Bond Angles for RSP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP2 |
119.5 |
109.5 |
| O5' |
P |
OP2 |
108.3 |
109.5 |
| P |
OP2 |
HOP2 |
109.5 |
114.0 |
| P |
O5' |
C5' |
121.1 |
123.0 |
| C6 |
N1 |
C1' |
120.9 |
119.8 |
| C2 |
N1 |
C1' |
118.9 |
119.8 |
| N1 |
C2 |
S2 |
118.9 |
119.5 |
| N1 |
C1' |
H1' |
106.7 |
110.5 |
| N1 |
C1' |
C2' |
114.3 |
110.6 |
| HN4 |
N4 |
HN4A |
120.1 |
120.0 |
| O4' |
C1' |
H1' |
113.0 |
110.7 |
| C2' |
C1' |
H1' |
106.7 |
110.6 |
| C1' |
C2' |
H2' |
115.9 |
110.9 |
| C1' |
C2' |
O2' |
108.0 |
110.9 |
| C3' |
C2' |
H2' |
112.5 |
110.9 |
| O2' |
C2' |
H2' |
106.9 |
110.8 |
| C2' |
O2' |
HO2' |
109.5 |
114.0 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| C5' |
C4' |
H4' |
104.6 |
109.9 |
| O4' |
C4' |
H4' |
115.0 |
109.7 |
| O5' |
C5' |
H5' |
109.3 |
109.5 |
Torsion Angles for RSP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5' |
P |
OP1 |
OP2 |
235.7 |
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
360.0 |
180.0 |
| OP3 |
P |
OP2 |
HOP2 |
236.4 |
300.0 |
| OP2 |
P |
O5' |
C5' |
48.1 |
65.0 |
| OP1 |
P |
O5' |
OP2 |
130.8 |
240.0 |
| O5' |
P |
OP2 |
HOP2 |
124.0 |
60.0 |
| P |
O5' |
C5' |
H5' |
280.9 |
60.0 |
| C2 |
N1 |
C6 |
C1' |
179.5 |
179.7 |
| C6 |
N1 |
C1' |
H1' |
146.0 |
354.1 |
| C6 |
N1 |
C1' |
C2' |
263.7 |
116.9 |
| C6 |
N1 |
C2 |
C1' |
180.5 |
180.3 |
| C2 |
N1 |
C1' |
H1' |
326.5 |
174.3 |
| C2 |
N1 |
C1' |
C2' |
84.2 |
297.2 |
| C1' |
N1 |
C2 |
S2 |
358.7 |
0.1 |
| O4' |
C1' |
N1 |
H1' |
238.2 |
237.0 |
| C2' |
C1' |
N1 |
H1' |
117.7 |
122.8 |
| N1 |
C1' |
C2' |
H2' |
335.3 |
37.3 |
| N1 |
C1' |
C2' |
O2' |
215.5 |
273.8 |
| N3 |
C2 |
N1 |
C1' |
178.7 |
180.0 |
| S2 |
C2 |
N1 |
C1' |
358.7 |
0.1 |
| C5 |
C6 |
N1 |
C1' |
181.3 |
179.7 |
| N1 |
C1' |
O4' |
H1' |
117.8 |
122.9 |
| C2' |
C1' |
O4' |
H1' |
242.1 |
241.4 |
| O4' |
C1' |
C2' |
H2' |
214.7 |
278.8 |
| N1 |
C1' |
H1' |
C2' |
122.6 |
122.8 |
| H1' |
C1' |
C2' |
H2' |
92.9 |
160.1 |
| H1' |
C1' |
C2' |
O2' |
333.1 |
36.6 |
| N1 |
C1' |
C2' |
H1' |
242.4 |
237.2 |
| O4' |
C1' |
C2' |
H1' |
121.8 |
118.6 |
| C3' |
C2' |
C1' |
H2' |
122.5 |
118.2 |
| O2' |
C2' |
C1' |
H2' |
240.2 |
236.4 |
| C1' |
C2' |
O2' |
HO2' |
180.0 |
180.0 |
| C3' |
C2' |
C1' |
H1' |
215.4 |
278.3 |
| C1' |
C2' |
C3' |
H2' |
235.2 |
241.8 |
| O2' |
C2' |
C3' |
H2' |
120.2 |
123.6 |
| C3' |
C2' |
O2' |
HO2' |
291.3 |
292.7 |
| H2' |
C2' |
C1' |
H1' |
92.9 |
160.1 |
| C1' |
C2' |
H2' |
O2' |
239.6 |
236.4 |
| H2' |
C2' |
O2' |
HO2' |
54.7 |
56.4 |
| O2' |
C2' |
C1' |
H1' |
333.1 |
36.6 |
| C1' |
C2' |
O2' |
H2' |
125.3 |
123.6 |
| C3' |
C2' |
O2' |
H2' |
236.6 |
236.3 |
| HO2' |
O2' |
C2' |
H2' |
54.7 |
56.4 |
| C4' |
C3' |
C2' |
H2' |
158.0 |
97.3 |
| C4' |
C3' |
O3' |
HO3' |
294.8 |
176.2 |
| H3' |
C3' |
O3' |
HO3' |
58.0 |
298.9 |
| O3' |
C3' |
C2' |
H2' |
277.4 |
216.0 |
| P |
O5' |
C5' |
C4' |
160.9 |
180.1 |
| O4' |
C4' |
C5' |
H4' |
123.4 |
121.0 |
| C4' |
O4' |
C1' |
H1' |
120.3 |
78.7 |
| C5' |
C4' |
O4' |
H4' |
243.0 |
239.0 |
| C5' |
O5' |
P |
OP2 |
48.1 |
65.0 |
| O5' |
C5' |
C4' |
H4' |
185.8 |
306.0 |
| H5' |
C5' |
C4' |
H4' |
65.8 |
66.0 |