PDB Chemical Component RSM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RSM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C |
1.556 |
1.507 |
| C |
O |
1.249 |
1.213 |
| C |
N |
1.382 |
1.347 |
| N |
CA |
1.517 |
1.465 |
| CA |
CB |
1.568 |
1.529 |
| CA |
C3 |
1.592 |
1.508 |
| CB |
CG |
1.561 |
1.530 |
| CG |
SD |
1.703 |
1.813 |
| SD |
OD1 |
1.661 |
1.421 |
| SD |
CE |
1.669 |
1.814 |
| C3 |
O3 |
1.243 |
1.213 |
| C3 |
N2 |
1.431 |
1.348 |
| N2 |
C1 |
1.497 |
1.465 |
| C2 |
H2 |
1.100 |
1.089 |
| C2 |
H2A |
1.100 |
1.089 |
| C2 |
H2B |
1.100 |
1.090 |
| N |
HN |
1.000 |
0.970 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.091 |
| CG |
HG |
1.100 |
1.090 |
| CG |
HGA |
1.100 |
1.090 |
| CE |
HE |
1.100 |
1.090 |
| CE |
HEA |
1.100 |
1.090 |
| CE |
HEB |
1.100 |
1.090 |
| N2 |
HN2 |
1.001 |
0.970 |
| C1 |
H1 |
1.099 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.089 |
Bond Angles for RSM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C |
O |
121.3 |
120.0 |
| C2 |
C |
N |
122.8 |
120.0 |
| C |
C2 |
H2 |
109.5 |
109.5 |
| C |
C2 |
H2A |
109.4 |
109.5 |
| C |
C2 |
H2B |
109.5 |
109.4 |
| O |
C |
N |
115.8 |
120.0 |
| C |
N |
CA |
137.0 |
120.0 |
| C |
N |
HN |
111.5 |
120.0 |
| N |
CA |
CB |
104.1 |
109.4 |
| N |
CA |
C3 |
125.0 |
109.4 |
| CA |
N |
HN |
111.5 |
120.0 |
| N |
CA |
HA |
104.1 |
109.5 |
| CB |
CA |
C3 |
113.6 |
109.5 |
| CA |
CB |
CG |
116.7 |
109.5 |
| CB |
CA |
HA |
118.3 |
109.5 |
| CA |
CB |
HB |
107.1 |
109.5 |
| CA |
CB |
HBA |
105.5 |
109.5 |
| CA |
C3 |
O3 |
119.2 |
120.0 |
| CA |
C3 |
N2 |
117.1 |
120.0 |
| C3 |
CA |
HA |
92.0 |
109.4 |
| CB |
CG |
SD |
125.3 |
109.5 |
| CG |
CB |
HB |
107.1 |
109.5 |
| CG |
CB |
HBA |
105.5 |
109.5 |
| CB |
CG |
HG |
104.5 |
109.4 |
| CB |
CG |
HGA |
100.8 |
109.5 |
| CG |
SD |
OD1 |
111.7 |
109.5 |
| CG |
SD |
CE |
108.6 |
103.0 |
| SD |
CG |
HG |
104.5 |
109.5 |
| SD |
CG |
HGA |
100.8 |
109.5 |
| OD1 |
SD |
CE |
110.1 |
109.5 |
| SD |
CE |
HE |
109.5 |
109.4 |
| SD |
CE |
HEA |
109.5 |
109.5 |
| SD |
CE |
HEB |
109.5 |
109.4 |
| O3 |
C3 |
N2 |
123.7 |
120.0 |
| C3 |
N2 |
C1 |
136.4 |
120.0 |
| C3 |
N2 |
HN2 |
111.8 |
120.0 |
| C1 |
N2 |
HN2 |
111.8 |
120.0 |
| N2 |
C1 |
H1 |
109.5 |
109.4 |
| N2 |
C1 |
H1A |
109.5 |
109.4 |
| N2 |
C1 |
H1B |
109.5 |
109.4 |
| H2 |
C2 |
H2A |
109.5 |
109.5 |
| H2 |
C2 |
H2B |
109.5 |
109.5 |
| H2A |
C2 |
H2B |
109.5 |
109.5 |
| HB |
CB |
HBA |
115.3 |
109.4 |
| HG |
CG |
HGA |
122.9 |
109.5 |
| HE |
CE |
HEA |
109.5 |
109.4 |
| HE |
CE |
HEB |
109.5 |
109.5 |
| HEA |
CE |
HEB |
109.5 |
109.5 |
| H1 |
C1 |
H1A |
109.5 |
109.5 |
| H1 |
C1 |
H1B |
109.4 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.5 |
Torsion Angles for RSM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
C2 |
N |
181.7 |
180.0 |
| C2 |
C |
N |
CA |
2.3 |
180.0 |
| C2 |
C |
N |
HN |
182.3 |
360.0 |
| H2 |
C2 |
C |
H2A |
240.0 |
240.0 |
| H2 |
C2 |
C |
H2B |
120.0 |
120.0 |
| H2A |
C2 |
C |
H2B |
240.0 |
240.0 |
| C2 |
C |
O |
N |
178.4 |
180.0 |
| O |
C |
C2 |
H2 |
233.2 |
360.0 |
| O |
C |
C2 |
H2A |
353.2 |
120.0 |
| O |
C |
C2 |
H2B |
113.2 |
240.0 |
| O |
C |
N |
CA |
180.7 |
0.0 |
| O |
C |
N |
HN |
0.7 |
180.0 |
| C2 |
C |
N |
O |
181.6 |
180.0 |
| N |
C |
C2 |
H2 |
51.5 |
180.0 |
| N |
C |
C2 |
H2A |
171.5 |
300.0 |
| N |
C |
C2 |
H2B |
291.5 |
60.0 |
| C |
N |
CA |
CB |
182.6 |
300.0 |
| C |
N |
CA |
C3 |
315.4 |
60.0 |
| CA |
N |
C |
HN |
180.0 |
180.0 |
| C |
N |
CA |
HA |
58.1 |
179.9 |
| C |
N |
CA |
HN |
180.0 |
180.0 |
| CB |
CA |
N |
C3 |
227.2 |
240.0 |
| N |
CA |
CB |
CG |
335.3 |
295.0 |
| CB |
CA |
N |
HA |
124.5 |
120.0 |
| N |
CA |
CB |
HB |
95.3 |
55.0 |
| N |
CA |
CB |
HBA |
218.6 |
175.0 |
| N |
CA |
C3 |
O3 |
333.2 |
340.0 |
| N |
CA |
C3 |
N2 |
154.4 |
160.1 |
| C3 |
CA |
N |
HA |
257.3 |
240.0 |
| N |
CA |
CB |
C3 |
139.0 |
120.0 |
| CB |
CA |
N |
HN |
2.6 |
120.0 |
| N |
CA |
CB |
HA |
245.2 |
240.0 |
| CB |
CA |
C3 |
O3 |
102.2 |
99.9 |
| CB |
CA |
C3 |
N2 |
283.4 |
280.0 |
| C3 |
CA |
CB |
HA |
106.1 |
120.0 |
| CA |
CB |
CG |
SD |
135.8 |
180.0 |
| CG |
CB |
CA |
HB |
240.0 |
240.0 |
| CG |
CB |
CA |
HBA |
116.7 |
120.0 |
| CA |
CB |
CG |
HG |
255.8 |
300.0 |
| CA |
CB |
CG |
HGA |
24.2 |
60.1 |
| HB |
CB |
CA |
HBA |
236.7 |
240.0 |
| N |
CA |
C3 |
CB |
230.9 |
240.0 |
| C3 |
CA |
N |
HN |
135.4 |
240.0 |
| N |
CA |
C3 |
HA |
108.8 |
120.0 |
| C3 |
CA |
CB |
CG |
196.3 |
175.0 |
| CB |
CA |
C3 |
HA |
237.8 |
240.0 |
| C3 |
CA |
CB |
HB |
316.3 |
295.1 |
| C3 |
CA |
CB |
HBA |
79.6 |
55.0 |
| O3 |
C3 |
CA |
N2 |
178.8 |
179.9 |
| CA |
C3 |
N2 |
C1 |
198.3 |
180.0 |
| CA |
C3 |
N2 |
HN2 |
18.3 |
360.0 |
| CG |
CB |
CA |
C3 |
196.3 |
175.0 |
| CG |
CB |
CA |
HA |
90.1 |
55.0 |
| CA |
CB |
CG |
HB |
120.0 |
120.1 |
| CA |
CB |
CG |
HBA |
243.3 |
240.0 |
| CB |
CG |
SD |
OD1 |
287.4 |
296.4 |
| CB |
CG |
SD |
CE |
165.8 |
180.0 |
| SD |
CG |
CB |
HG |
240.0 |
240.0 |
| SD |
CG |
CB |
HGA |
111.6 |
120.0 |
| HB |
CB |
CG |
HBA |
123.3 |
119.9 |
| HG |
CG |
CB |
HGA |
231.6 |
239.9 |
| SD |
CG |
CB |
HB |
15.8 |
60.0 |
| SD |
CG |
CB |
HBA |
252.5 |
300.0 |
| CB |
CG |
SD |
HG |
120.0 |
120.0 |
| CB |
CG |
SD |
HGA |
248.4 |
240.0 |
| OD1 |
SD |
CG |
CE |
121.6 |
116.4 |
| CG |
SD |
CE |
HE |
47.3 |
60.0 |
| CG |
SD |
CE |
HEA |
167.4 |
180.0 |
| CG |
SD |
CE |
HEB |
287.3 |
300.0 |
| HG |
CG |
SD |
HGA |
128.4 |
120.1 |
| CG |
SD |
OD1 |
CE |
239.3 |
247.7 |
| OD1 |
SD |
CG |
HG |
167.4 |
176.4 |
| OD1 |
SD |
CG |
HGA |
39.1 |
56.4 |
| OD1 |
SD |
CE |
HE |
284.8 |
303.5 |
| OD1 |
SD |
CE |
HEA |
44.8 |
63.5 |
| OD1 |
SD |
CE |
HEB |
164.8 |
183.6 |
| CG |
SD |
CE |
OD1 |
122.6 |
116.4 |
| CE |
SD |
CG |
HG |
45.8 |
60.0 |
| CE |
SD |
CG |
HGA |
277.4 |
300.0 |
| HE |
CE |
SD |
HEA |
240.0 |
240.0 |
| HE |
CE |
SD |
HEB |
120.0 |
120.0 |
| HEA |
CE |
SD |
HEB |
240.0 |
239.9 |
| CA |
C3 |
O3 |
N2 |
181.3 |
180.1 |
| O3 |
C3 |
CA |
HA |
224.4 |
220.0 |
| O3 |
C3 |
N2 |
C1 |
19.6 |
0.1 |
| O3 |
C3 |
N2 |
HN2 |
199.6 |
180.1 |
| CA |
C3 |
N2 |
O3 |
178.7 |
179.9 |
| N2 |
C3 |
CA |
HA |
45.6 |
40.1 |
| C1 |
N2 |
C3 |
HN2 |
180.0 |
180.0 |
| C3 |
N2 |
C1 |
H1 |
246.5 |
59.9 |
| C3 |
N2 |
C1 |
H1A |
6.5 |
179.9 |
| C3 |
N2 |
C1 |
H1B |
126.5 |
300.0 |
| C3 |
N2 |
C1 |
HN2 |
180.0 |
180.0 |
| H1 |
C1 |
N2 |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
N2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
N2 |
H1B |
240.0 |
240.0 |
| H2 |
C2 |
C |
O |
233.2 |
360.0 |
| H2 |
C2 |
C |
N |
51.5 |
180.0 |
| C |
C2 |
H2 |
H2A |
120.0 |
120.0 |
| C |
C2 |
H2 |
H2B |
240.0 |
240.1 |
| H2A |
C2 |
H2 |
H2B |
120.0 |
120.1 |
| H2A |
C2 |
C |
O |
353.2 |
120.0 |
| H2A |
C2 |
C |
N |
171.5 |
300.0 |
| C |
C2 |
H2A |
H2 |
240.0 |
240.0 |
| C |
C2 |
H2A |
H2B |
120.0 |
119.9 |
| H2 |
C2 |
H2A |
H2B |
240.0 |
239.9 |
| H2B |
C2 |
C |
O |
113.2 |
240.0 |
| H2B |
C2 |
C |
N |
291.5 |
60.0 |
| C |
C2 |
H2B |
H2 |
120.0 |
120.0 |
| C |
C2 |
H2B |
H2A |
240.0 |
240.0 |
| H2 |
C2 |
H2B |
H2A |
120.0 |
120.1 |
| C |
N |
HN |
CA |
180.0 |
180.0 |
| HN |
N |
CA |
CB |
2.6 |
120.0 |
| HN |
N |
CA |
C3 |
135.4 |
240.0 |
| HN |
N |
CA |
HA |
238.1 |
360.0 |
| N |
CA |
HA |
CB |
114.8 |
120.0 |
| N |
CA |
HA |
C3 |
233.1 |
240.0 |
| HA |
CA |
N |
HN |
238.1 |
360.0 |
| CB |
CA |
HA |
C3 |
118.3 |
120.0 |
| HA |
CA |
CB |
CG |
90.1 |
55.0 |
| HA |
CA |
CB |
HB |
210.1 |
175.1 |
| HA |
CA |
CB |
HBA |
333.4 |
295.0 |
| HA |
CA |
C3 |
O3 |
224.4 |
220.0 |
| HA |
CA |
C3 |
N2 |
45.6 |
40.1 |
| HB |
CB |
CA |
C3 |
316.3 |
295.1 |
| CA |
CB |
HB |
CG |
234.1 |
240.0 |
| HB |
CB |
CA |
HA |
210.1 |
175.1 |
| CA |
CB |
HB |
HBA |
117.1 |
120.0 |
| HB |
CB |
CG |
SD |
15.8 |
60.0 |
| CG |
CB |
HB |
HBA |
243.0 |
240.0 |
| HB |
CB |
CG |
HG |
135.8 |
179.9 |
| HB |
CB |
CG |
HGA |
264.2 |
300.0 |
| HBA |
CB |
CA |
C3 |
79.6 |
55.0 |
| CA |
CB |
HBA |
CG |
124.1 |
120.0 |
| HBA |
CB |
CA |
HA |
333.4 |
295.0 |
| CA |
CB |
HBA |
HB |
242.0 |
240.0 |
| HBA |
CB |
CG |
SD |
252.5 |
300.0 |
| CG |
CB |
HBA |
HB |
118.0 |
120.0 |
| HBA |
CB |
CG |
HG |
12.5 |
60.0 |
| HBA |
CB |
CG |
HGA |
140.9 |
180.0 |
| CB |
CG |
HG |
SD |
226.9 |
240.0 |
| HG |
CG |
CB |
HB |
135.8 |
179.9 |
| HG |
CG |
CB |
HBA |
12.5 |
60.0 |
| CB |
CG |
HG |
HGA |
113.4 |
120.0 |
| HG |
CG |
SD |
OD1 |
167.4 |
176.4 |
| HG |
CG |
SD |
CE |
45.8 |
60.0 |
| SD |
CG |
HG |
HGA |
246.5 |
240.0 |
| CB |
CG |
HGA |
SD |
129.4 |
120.0 |
| HGA |
CG |
CB |
HB |
264.2 |
300.0 |
| HGA |
CG |
CB |
HBA |
140.9 |
180.0 |
| CB |
CG |
HGA |
HG |
244.7 |
240.0 |
| HGA |
CG |
SD |
OD1 |
39.1 |
56.4 |
| HGA |
CG |
SD |
CE |
277.4 |
300.0 |
| SD |
CG |
HGA |
HG |
115.3 |
120.0 |
| SD |
CE |
HE |
HEA |
120.0 |
120.0 |
| SD |
CE |
HE |
HEB |
240.0 |
240.0 |
| HEA |
CE |
HE |
HEB |
120.0 |
120.0 |
| SD |
CE |
HEA |
HE |
240.0 |
240.0 |
| SD |
CE |
HEA |
HEB |
120.0 |
120.0 |
| HE |
CE |
HEA |
HEB |
240.0 |
240.0 |
| SD |
CE |
HEB |
HE |
120.0 |
120.0 |
| SD |
CE |
HEB |
HEA |
240.0 |
239.9 |
| HE |
CE |
HEB |
HEA |
120.0 |
120.0 |
| C3 |
N2 |
HN2 |
C1 |
180.0 |
180.0 |
| HN2 |
N2 |
C1 |
H1 |
66.5 |
240.0 |
| HN2 |
N2 |
C1 |
H1A |
186.5 |
360.0 |
| HN2 |
N2 |
C1 |
H1B |
306.5 |
120.0 |
| H1 |
C1 |
N2 |
HN2 |
66.5 |
240.0 |
| N2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| N2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.1 |
| H1A |
C1 |
N2 |
HN2 |
186.5 |
360.0 |
| N2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| N2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
239.9 |
| H1B |
C1 |
N2 |
HN2 |
306.5 |
120.0 |
| N2 |
C1 |
H1B |
H1 |
120.0 |
119.9 |
| N2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
120.1 |