PDB Chemical Component RPC

Ideal Model

Chemical Description

Name cytidine 3',5'-bis(dihydrogen phosphate)
Formula C9 H15 N3 O11 P2
Formal charge 0
Molecular weight 403.176 g/mol
Component type RNA LINKING
Nonstandard Parent Id C

Chemical features

Atom count 40
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3
Bond count 41
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) cytidine 3',5'-bis(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H]2O
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]2O
Stereo SMILES (OpenEye) C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)OP(=O)(O)O)O
InChI descriptor InChI=1S/C9H15N3O11P2/c10-5-1-2-12(9(14)11-5)8-6(13)7(23-25(18,19)20)4(22-8)3-21-24(15,16)17/h1-2,4,6-8,13H,3H2,(H2,10,11,14)(H2,15,16,17)(H2,18,19,20)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor MVGIITUCOOTSAP-XVFCMESISA-N

Status Information

Last modified 2013-04-19
Created 2012-12-11
Release status REL
Model PDB code 4I67
Processing site RCSB