PDB Chemical Component RP3

Ideal Model

Chemical Description

Name 3-deoxy-5-O-phosphono-beta-D-ribofuranose
Synonyms 3'-deoxy-D-ribofuranose-5'-phosphate; 3-deoxy-5-O-phosphono-beta-D-ribose; 3-deoxy-5-O-phosphono-D-ribose; 3-deoxy-5-O-phosphono-ribose
Formula C5 H11 O7 P
Formal charge 0
Molecular weight 214.110 g/mol
Component type D-saccharide, beta linking

Chemical features

Atom count 24
Chiral atom count 3
Chiral atoms C4 C2 C1
Observed leaving atoms O1 HO2 HO1
Bond count 24
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 3-deoxy-5-O-phosphono-beta-D-erythro-pentofuranose
Systematic name (OpenEye OEToolkits) [(2S,4R,5R)-4,5-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@@H]1C[C@@H](CO[P](O)(O)=O)O[C@H]1O
SMILES (CACTVS) O[CH]1C[CH](CO[P](O)(O)=O)O[CH]1O
Stereo SMILES (OpenEye) C1[C@H](O[C@H]([C@@H]1O)O)COP(=O)(O)O
InChI descriptor InChI=1S/C5H11O7P/c6-4-1-3(12-5(4)7)2-11-13(8,9)10/h3-7H,1-2H2,(H2,8,9,10)/t3-,4+,5+/m0/s1
InChIKey descriptor OOLHLHJSMUTTHE-VPENINKCSA-N

Status Information

Last modified 2020-07-17
Created 2015-07-28
Release status REL
Model PDB code 5CX8
Processing site RCSB