PDB Chemical Component RO9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RO9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C32 |
C43 |
1.398 |
1.382 |
| C32 |
C29 |
1.377 |
1.381 |
| C43 |
C14 |
1.383 |
1.389 |
| C23 |
C21 |
1.542 |
1.507 |
| C25 |
O24 |
1.441 |
1.429 |
| C29 |
C16 |
1.388 |
1.394 |
| C14 |
O24 |
1.379 |
1.359 |
| C14 |
C15 |
1.390 |
1.385 |
| C21 |
C22 |
1.340 |
1.352 |
| C21 |
N20 |
1.332 |
1.350 |
| C16 |
C15 |
1.395 |
1.394 |
| C16 |
C3 |
1.412 |
1.481 |
| C22 |
C18 |
1.336 |
1.404 |
| N20 |
N19 |
1.295 |
1.401 |
| C3 |
N4 |
1.342 |
1.321 |
| C3 |
C8 |
1.399 |
1.413 |
| N4 |
C5 |
1.333 |
1.330 |
| C18 |
N19 |
1.331 |
1.313 |
| C18 |
N17 |
1.342 |
1.400 |
| C9 |
C8 |
1.402 |
1.401 |
| C9 |
C10 |
1.388 |
1.363 |
| C8 |
C7 |
1.382 |
1.419 |
| C5 |
N17 |
1.349 |
1.393 |
| C5 |
C6 |
1.392 |
1.381 |
| C10 |
C11 |
1.378 |
1.393 |
| C7 |
C6 |
1.393 |
1.406 |
| C7 |
C12 |
1.390 |
1.402 |
| C11 |
C12 |
1.403 |
1.363 |
| C6 |
H1 |
1.079 |
1.079 |
| C10 |
H2 |
1.080 |
1.081 |
| C15 |
H3 |
1.080 |
1.080 |
| C12 |
H4 |
1.080 |
1.080 |
| N17 |
H5 |
1.000 |
0.969 |
| C11 |
H6 |
1.080 |
1.080 |
| C23 |
H7 |
1.100 |
1.090 |
| C23 |
H8 |
1.100 |
1.091 |
| C23 |
H9 |
1.100 |
1.090 |
| C22 |
H10 |
1.080 |
1.080 |
| N20 |
H11 |
1.000 |
0.970 |
| C9 |
H12 |
1.080 |
1.081 |
| C29 |
H13 |
1.080 |
1.081 |
| C32 |
H14 |
1.080 |
1.080 |
| C43 |
H15 |
1.080 |
1.080 |
| C25 |
H16 |
1.100 |
1.090 |
| C25 |
H17 |
1.100 |
1.091 |
| C25 |
H18 |
1.100 |
1.091 |
Bond Angles for RO9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C43 |
C32 |
H14 |
119.6 |
120.0 |
| C32 |
C43 |
H15 |
119.3 |
119.9 |
| C32 |
C29 |
H13 |
120.4 |
120.0 |
| C43 |
C14 |
O24 |
122.7 |
120.0 |
| C23 |
C21 |
C22 |
126.4 |
126.1 |
| C23 |
C21 |
N20 |
122.9 |
126.1 |
| C14 |
C15 |
H3 |
118.8 |
120.1 |
| C22 |
C21 |
N20 |
110.7 |
107.9 |
| C21 |
C22 |
C18 |
104.5 |
107.9 |
| C21 |
C22 |
H10 |
127.7 |
126.0 |
| C21 |
N20 |
N19 |
106.3 |
108.0 |
| C21 |
N20 |
H11 |
126.9 |
126.0 |
| C16 |
C15 |
H3 |
118.7 |
120.1 |
| C22 |
C18 |
N19 |
108.9 |
108.0 |
| C18 |
C22 |
H10 |
127.8 |
126.1 |
| N19 |
N20 |
H11 |
126.9 |
126.0 |
| C18 |
N17 |
H5 |
118.0 |
120.1 |
| C9 |
C10 |
H2 |
121.0 |
119.4 |
| C6 |
C5 |
N17 |
119.6 |
119.1 |
| C5 |
N17 |
H5 |
118.1 |
120.0 |
| C5 |
C6 |
H1 |
120.5 |
120.7 |
| C10 |
C11 |
C12 |
120.3 |
120.9 |
| C11 |
C10 |
H2 |
121.1 |
119.5 |
| C10 |
C11 |
H6 |
119.8 |
119.5 |
| C7 |
C6 |
H1 |
120.4 |
120.6 |
| C7 |
C12 |
H4 |
119.2 |
120.3 |
| C11 |
C12 |
H4 |
119.2 |
120.2 |
| H7 |
C23 |
H8 |
109.5 |
109.4 |
| H7 |
C23 |
H9 |
109.5 |
109.5 |
| H8 |
C23 |
H9 |
109.5 |
109.5 |
| H16 |
C25 |
H17 |
109.5 |
109.5 |
| H16 |
C25 |
H18 |
109.5 |
109.5 |
| H17 |
C25 |
H18 |
109.4 |
109.4 |
Torsion Angles for RO9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C43 |
C32 |
C29 |
H13 |
180.4 |
180.3 |
| C32 |
C43 |
C14 |
O24 |
180.5 |
180.0 |
| C43 |
C14 |
C15 |
H3 |
178.5 |
180.0 |
| C22 |
C21 |
C23 |
N20 |
180.3 |
180.3 |
| C23 |
C21 |
C22 |
C18 |
180.1 |
179.7 |
| C23 |
C21 |
C22 |
H10 |
0.1 |
359.7 |
| C23 |
C21 |
N20 |
N19 |
179.6 |
180.2 |
| C23 |
C21 |
N20 |
H11 |
359.6 |
0.3 |
| C29 |
C16 |
C15 |
H3 |
181.8 |
180.0 |
| O24 |
C14 |
C15 |
H3 |
358.7 |
0.0 |
| C16 |
C15 |
C14 |
H3 |
180.0 |
180.2 |
| C23 |
C21 |
C22 |
N20 |
179.7 |
179.8 |
| C22 |
C21 |
N20 |
N19 |
359.3 |
360.0 |
| C22 |
C21 |
N20 |
H11 |
179.3 |
180.0 |
| C21 |
C22 |
C18 |
N19 |
0.1 |
0.0 |
| C18 |
C22 |
C21 |
H10 |
180.0 |
180.0 |
| C23 |
C21 |
N20 |
C22 |
180.3 |
180.2 |
| N20 |
C21 |
C22 |
C18 |
0.3 |
360.0 |
| N20 |
C21 |
C22 |
H10 |
180.4 |
180.0 |
| N19 |
N20 |
C21 |
H11 |
180.0 |
180.0 |
| C14 |
C15 |
C16 |
H3 |
180.0 |
179.8 |
| C3 |
C16 |
C15 |
H3 |
358.4 |
360.0 |
| C18 |
C22 |
C21 |
N20 |
0.3 |
360.0 |
| C21 |
C22 |
C18 |
H10 |
180.0 |
180.0 |
| C22 |
C18 |
N17 |
H5 |
180.7 |
185.7 |
| C21 |
N20 |
N19 |
H11 |
180.0 |
180.0 |
| C22 |
C18 |
N19 |
N20 |
359.5 |
360.0 |
| N4 |
C5 |
N17 |
H5 |
168.7 |
175.1 |
| N4 |
C5 |
C6 |
H1 |
181.6 |
179.7 |
| N19 |
C18 |
C22 |
H10 |
180.1 |
180.0 |
| C18 |
N19 |
N20 |
H11 |
180.7 |
180.0 |
| N19 |
C18 |
N17 |
H5 |
0.1 |
5.6 |
| C5 |
N17 |
C18 |
H5 |
180.0 |
179.9 |
| C8 |
C9 |
C10 |
H2 |
180.5 |
179.7 |
| C11 |
C10 |
C9 |
H2 |
180.0 |
179.8 |
| C9 |
C10 |
C11 |
H6 |
179.0 |
180.3 |
| C8 |
C7 |
C6 |
H1 |
178.4 |
180.0 |
| C8 |
C7 |
C12 |
H4 |
181.3 |
180.1 |
| C18 |
N17 |
C5 |
H5 |
180.0 |
180.1 |
| N17 |
C5 |
C6 |
H1 |
359.8 |
0.0 |
| C6 |
C5 |
N17 |
H5 |
350.4 |
354.7 |
| C7 |
C6 |
C5 |
H1 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
H2 |
180.0 |
180.2 |
| C10 |
C11 |
C12 |
H4 |
180.1 |
180.0 |
| C5 |
C6 |
C7 |
H1 |
180.0 |
180.0 |
| C12 |
C7 |
C6 |
H1 |
0.4 |
0.3 |
| C11 |
C12 |
C7 |
H4 |
180.0 |
180.0 |
| C12 |
C11 |
C10 |
H2 |
179.0 |
180.0 |
| C10 |
C11 |
C12 |
H6 |
180.0 |
180.1 |
| C7 |
C12 |
C11 |
H4 |
180.0 |
180.0 |
| H1 |
C6 |
C5 |
N17 |
359.8 |
0.0 |
| H2 |
C10 |
C11 |
C12 |
179.0 |
180.0 |
| H2 |
C10 |
C11 |
H6 |
359.0 |
0.1 |
| C10 |
C11 |
H6 |
C12 |
180.0 |
179.9 |
| H6 |
C11 |
C10 |
H2 |
359.0 |
0.1 |
| H6 |
C11 |
C12 |
H4 |
0.1 |
359.9 |
| H7 |
C23 |
C21 |
C22 |
90.1 |
90.0 |
| H7 |
C23 |
C21 |
N20 |
269.8 |
269.7 |
| H8 |
C23 |
H7 |
H9 |
120.0 |
120.0 |
| H8 |
C23 |
C21 |
C22 |
210.2 |
210.0 |
| H8 |
C23 |
C21 |
N20 |
29.9 |
29.7 |
| H7 |
C23 |
H8 |
H9 |
240.0 |
240.0 |
| H9 |
C23 |
C21 |
C22 |
330.1 |
330.0 |
| H9 |
C23 |
C21 |
N20 |
149.8 |
149.7 |
| H7 |
C23 |
H9 |
H8 |
120.0 |
120.0 |
| H10 |
C22 |
C21 |
N20 |
180.4 |
180.0 |
| C21 |
C22 |
H10 |
C18 |
180.0 |
180.0 |
| H10 |
C22 |
C18 |
N19 |
180.1 |
180.0 |
| C21 |
N20 |
H11 |
N19 |
180.0 |
180.0 |
| H12 |
C9 |
C10 |
H2 |
0.5 |
0.2 |
| H14 |
C32 |
C43 |
H15 |
359.9 |
0.3 |
| H14 |
C32 |
C29 |
H13 |
0.4 |
0.1 |
| H15 |
C43 |
C32 |
H14 |
359.9 |
0.3 |
| H15 |
C43 |
C14 |
O24 |
0.5 |
359.7 |
| H17 |
C25 |
H16 |
H18 |
119.9 |
120.0 |
| H16 |
C25 |
H17 |
H18 |
240.0 |
239.9 |
| H16 |
C25 |
H18 |
H17 |
120.0 |
120.0 |