PDB Chemical Component RNS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RNS
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.581 |
1.507 |
C1 |
O1 |
1.239 |
1.207 |
C1 |
H11 |
1.104 |
1.080 |
C2 |
C3 |
1.510 |
1.530 |
C2 |
O2 |
1.428 |
1.430 |
C2 |
H2 |
1.115 |
1.090 |
C3 |
C4 |
1.524 |
1.529 |
C3 |
O3 |
1.431 |
1.428 |
C3 |
H3 |
1.115 |
1.089 |
C4 |
C5 |
1.500 |
1.529 |
C4 |
O4 |
1.434 |
1.429 |
C4 |
H4 |
1.115 |
1.089 |
C5 |
C6 |
1.523 |
1.530 |
C5 |
O5 |
1.475 |
1.429 |
C5 |
H5 |
1.115 |
1.090 |
C6 |
H61 |
1.116 |
1.089 |
C6 |
H62 |
1.115 |
1.090 |
C6 |
H63 |
1.114 |
1.090 |
O2 |
HO2 |
0.950 |
0.966 |
O3 |
HO3 |
0.951 |
0.967 |
O4 |
HO4 |
0.950 |
0.967 |
O5 |
HO5 |
0.950 |
0.966 |
Bond Angles for RNS
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
123.9 |
120.1 |
C2 |
C1 |
H11 |
130.8 |
120.0 |
C1 |
C2 |
C3 |
112.3 |
109.5 |
C1 |
C2 |
O2 |
110.3 |
109.4 |
C1 |
C2 |
H2 |
106.7 |
109.4 |
O1 |
C1 |
H11 |
105.3 |
119.9 |
C3 |
C2 |
O2 |
108.9 |
109.5 |
C3 |
C2 |
H2 |
108.2 |
109.5 |
C2 |
C3 |
C4 |
111.2 |
109.5 |
C2 |
C3 |
O3 |
106.3 |
109.4 |
C2 |
C3 |
H3 |
111.1 |
109.5 |
O2 |
C2 |
H2 |
110.3 |
109.5 |
C2 |
O2 |
HO2 |
110.3 |
106.7 |
C4 |
C3 |
O3 |
111.3 |
109.5 |
C4 |
C3 |
H3 |
106.1 |
109.5 |
C3 |
C4 |
C5 |
112.5 |
109.5 |
C3 |
C4 |
O4 |
108.4 |
109.5 |
C3 |
C4 |
H4 |
108.2 |
109.5 |
O3 |
C3 |
H3 |
110.9 |
109.5 |
C3 |
O3 |
HO3 |
106.3 |
106.8 |
C5 |
C4 |
O4 |
109.6 |
109.4 |
C5 |
C4 |
H4 |
107.0 |
109.5 |
C4 |
C5 |
C6 |
113.7 |
109.5 |
C4 |
C5 |
O5 |
110.0 |
109.5 |
C4 |
C5 |
H5 |
108.4 |
109.5 |
O4 |
C4 |
H4 |
111.2 |
109.5 |
C4 |
O4 |
HO4 |
108.4 |
106.8 |
C6 |
C5 |
O5 |
115.3 |
109.4 |
C6 |
C5 |
H5 |
102.2 |
109.4 |
C5 |
C6 |
H61 |
113.6 |
109.6 |
C5 |
C6 |
H62 |
110.7 |
109.4 |
C5 |
C6 |
H63 |
110.7 |
109.4 |
O5 |
C5 |
H5 |
106.5 |
109.4 |
C5 |
O5 |
HO5 |
110.0 |
106.8 |
H61 |
C6 |
H62 |
110.6 |
109.5 |
H61 |
C6 |
H63 |
110.7 |
109.5 |
H62 |
C6 |
H63 |
99.7 |
109.4 |
Torsion Angles for RNS
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
H11 |
180.0 |
180.0 |
C3 |
C2 |
C1 |
O2 |
238.3 |
240.0 |
C3 |
C2 |
C1 |
H2 |
118.5 |
120.1 |
C1 |
C2 |
C3 |
C4 |
40.0 |
180.0 |
C1 |
C2 |
C3 |
O3 |
161.3 |
300.0 |
C1 |
C2 |
C3 |
H3 |
282.1 |
60.0 |
O2 |
C2 |
C1 |
H2 |
240.1 |
240.1 |
C1 |
C2 |
O2 |
HO2 |
180.0 |
300.0 |
C2 |
C1 |
O1 |
H11 |
180.0 |
180.0 |
O1 |
C1 |
C2 |
C3 |
217.1 |
120.0 |
O1 |
C1 |
C2 |
O2 |
338.8 |
240.0 |
O1 |
C1 |
C2 |
H2 |
98.6 |
360.0 |
C2 |
C1 |
H11 |
O1 |
180.0 |
180.0 |
H11 |
C1 |
C2 |
C3 |
37.1 |
300.0 |
H11 |
C1 |
C2 |
O2 |
158.8 |
60.0 |
H11 |
C1 |
C2 |
H2 |
278.6 |
180.0 |
C3 |
C2 |
C1 |
O1 |
217.1 |
120.0 |
C3 |
C2 |
C1 |
H11 |
37.1 |
300.0 |
C1 |
C2 |
C3 |
O2 |
122.5 |
120.0 |
C1 |
C2 |
C3 |
H2 |
242.4 |
240.0 |
O2 |
C2 |
C3 |
H2 |
119.9 |
120.0 |
C3 |
C2 |
O2 |
HO2 |
303.7 |
60.0 |
C4 |
C3 |
C2 |
O3 |
238.7 |
240.0 |
C4 |
C3 |
C2 |
H3 |
118.0 |
120.0 |
C2 |
C3 |
C4 |
C5 |
159.4 |
180.0 |
C2 |
C3 |
C4 |
O4 |
38.1 |
60.0 |
C2 |
C3 |
C4 |
H4 |
277.4 |
300.0 |
O3 |
C3 |
C2 |
H3 |
239.2 |
240.1 |
C2 |
C3 |
O3 |
HO3 |
179.9 |
300.0 |
O2 |
C2 |
C1 |
O1 |
338.8 |
240.0 |
O2 |
C2 |
C1 |
H11 |
158.8 |
60.0 |
C1 |
C2 |
O2 |
C3 |
236.3 |
240.0 |
C1 |
C2 |
O2 |
H2 |
117.7 |
119.9 |
C3 |
C2 |
O2 |
H2 |
241.4 |
240.0 |
O2 |
C2 |
C3 |
C4 |
277.5 |
60.0 |
O2 |
C2 |
C3 |
O3 |
38.8 |
180.0 |
O2 |
C2 |
C3 |
H3 |
159.6 |
300.0 |
H2 |
C2 |
C1 |
O1 |
98.6 |
360.0 |
H2 |
C2 |
C1 |
H11 |
278.6 |
180.0 |
C1 |
C2 |
H2 |
C3 |
121.1 |
120.1 |
C1 |
C2 |
H2 |
O2 |
240.1 |
240.1 |
C3 |
C2 |
H2 |
O2 |
119.0 |
120.0 |
H2 |
C2 |
C3 |
C4 |
157.6 |
300.0 |
H2 |
C2 |
C3 |
O3 |
278.8 |
60.0 |
H2 |
C2 |
C3 |
H3 |
39.6 |
180.0 |
H2 |
C2 |
O2 |
HO2 |
62.3 |
180.0 |
C4 |
C3 |
C2 |
O2 |
277.5 |
60.0 |
C4 |
C3 |
C2 |
H2 |
157.6 |
300.0 |
C2 |
C3 |
C4 |
O3 |
118.3 |
120.0 |
C2 |
C3 |
C4 |
H3 |
239.1 |
240.0 |
O3 |
C3 |
C4 |
H3 |
120.8 |
120.0 |
C4 |
C3 |
O3 |
HO3 |
301.1 |
60.0 |
C5 |
C4 |
C3 |
O4 |
121.4 |
120.0 |
C5 |
C4 |
C3 |
H4 |
242.1 |
240.0 |
C3 |
C4 |
C5 |
C6 |
156.0 |
180.0 |
C3 |
C4 |
C5 |
O5 |
25.1 |
60.0 |
C3 |
C4 |
C5 |
H5 |
269.0 |
300.1 |
O4 |
C4 |
C3 |
H4 |
120.7 |
120.0 |
C3 |
C4 |
O4 |
HO4 |
180.0 |
60.0 |
O3 |
C3 |
C2 |
O2 |
38.8 |
180.0 |
O3 |
C3 |
C2 |
H2 |
278.8 |
60.0 |
C2 |
C3 |
O3 |
C4 |
238.8 |
240.0 |
C2 |
C3 |
O3 |
H3 |
120.9 |
120.0 |
C4 |
C3 |
O3 |
H3 |
242.1 |
239.9 |
O3 |
C3 |
C4 |
C5 |
41.1 |
60.0 |
O3 |
C3 |
C4 |
O4 |
279.7 |
300.0 |
O3 |
C3 |
C4 |
H4 |
159.0 |
180.0 |
H3 |
C3 |
C2 |
O2 |
159.6 |
300.0 |
H3 |
C3 |
C2 |
H2 |
39.6 |
180.0 |
C2 |
C3 |
H3 |
C4 |
121.0 |
120.0 |
C2 |
C3 |
H3 |
O3 |
241.9 |
240.1 |
C4 |
C3 |
H3 |
O3 |
121.0 |
120.1 |
H3 |
C3 |
C4 |
C5 |
280.3 |
300.0 |
H3 |
C3 |
C4 |
O4 |
159.0 |
180.0 |
H3 |
C3 |
C4 |
H4 |
38.3 |
60.0 |
H3 |
C3 |
O3 |
HO3 |
59.0 |
180.0 |
C5 |
C4 |
C3 |
O3 |
41.1 |
60.0 |
C5 |
C4 |
C3 |
H3 |
280.3 |
300.0 |
C3 |
C4 |
C5 |
O4 |
239.3 |
240.0 |
C3 |
C4 |
C5 |
H4 |
118.7 |
120.0 |
O4 |
C4 |
C5 |
H4 |
239.3 |
240.0 |
C5 |
C4 |
O4 |
HO4 |
56.8 |
300.0 |
C6 |
C5 |
C4 |
O5 |
131.0 |
120.0 |
C6 |
C5 |
C4 |
H5 |
247.1 |
240.0 |
C4 |
C5 |
C6 |
H61 |
180.0 |
180.1 |
C4 |
C5 |
C6 |
H62 |
305.2 |
300.1 |
C4 |
C5 |
C6 |
H63 |
54.8 |
60.0 |
O5 |
C5 |
C4 |
H5 |
116.1 |
120.0 |
C4 |
C5 |
O5 |
HO5 |
180.0 |
60.0 |
O4 |
C4 |
C3 |
O3 |
279.7 |
300.0 |
O4 |
C4 |
C3 |
H3 |
159.0 |
180.0 |
C3 |
C4 |
O4 |
C5 |
123.1 |
120.0 |
C3 |
C4 |
O4 |
H4 |
241.2 |
239.9 |
C5 |
C4 |
O4 |
H4 |
118.0 |
119.9 |
O4 |
C4 |
C5 |
C6 |
276.7 |
300.0 |
O4 |
C4 |
C5 |
O5 |
145.7 |
180.0 |
O4 |
C4 |
C5 |
H5 |
29.7 |
60.1 |
H4 |
C4 |
C3 |
O3 |
159.0 |
180.0 |
H4 |
C4 |
C3 |
H3 |
38.3 |
60.0 |
C3 |
C4 |
H4 |
C5 |
238.6 |
240.0 |
C3 |
C4 |
H4 |
O4 |
118.9 |
120.0 |
C5 |
C4 |
H4 |
O4 |
240.4 |
240.1 |
H4 |
C4 |
C5 |
C6 |
37.4 |
60.0 |
H4 |
C4 |
C5 |
O5 |
266.4 |
300.0 |
H4 |
C4 |
C5 |
H5 |
150.3 |
180.0 |
H4 |
C4 |
O4 |
HO4 |
298.8 |
180.0 |
C6 |
C5 |
C4 |
O4 |
276.7 |
300.0 |
C6 |
C5 |
C4 |
H4 |
37.4 |
60.0 |
C4 |
C5 |
C6 |
O5 |
231.7 |
240.0 |
C4 |
C5 |
C6 |
H5 |
116.6 |
120.1 |
O5 |
C5 |
C6 |
H5 |
245.0 |
240.1 |
C6 |
C5 |
O5 |
HO5 |
49.9 |
299.9 |
H61 |
C6 |
C5 |
H62 |
234.8 |
240.0 |
H61 |
C6 |
C5 |
H63 |
125.2 |
120.1 |
H62 |
C6 |
C5 |
H63 |
250.4 |
240.1 |
O5 |
C5 |
C4 |
O4 |
145.7 |
180.0 |
O5 |
C5 |
C4 |
H4 |
266.4 |
300.0 |
C4 |
C5 |
O5 |
C6 |
130.1 |
120.1 |
C4 |
C5 |
O5 |
H5 |
242.7 |
240.0 |
C6 |
C5 |
O5 |
H5 |
112.6 |
119.9 |
O5 |
C5 |
C6 |
H61 |
308.4 |
300.1 |
O5 |
C5 |
C6 |
H62 |
73.5 |
60.1 |
O5 |
C5 |
C6 |
H63 |
183.1 |
180.0 |
H5 |
C5 |
C4 |
O4 |
29.7 |
60.1 |
H5 |
C5 |
C4 |
H4 |
150.3 |
180.0 |
C4 |
C5 |
H5 |
C6 |
239.7 |
239.9 |
C4 |
C5 |
H5 |
O5 |
118.4 |
120.0 |
C6 |
C5 |
H5 |
O5 |
238.7 |
240.1 |
H5 |
C5 |
C6 |
H61 |
63.4 |
60.0 |
H5 |
C5 |
C6 |
H62 |
188.6 |
180.0 |
H5 |
C5 |
C6 |
H63 |
298.1 |
299.9 |
H5 |
C5 |
O5 |
HO5 |
297.3 |
180.0 |
H61 |
C6 |
C5 |
O5 |
308.4 |
300.1 |
H61 |
C6 |
C5 |
H5 |
63.4 |
60.0 |
C5 |
C6 |
H61 |
H62 |
125.2 |
120.0 |
C5 |
C6 |
H61 |
H63 |
234.8 |
240.0 |
H62 |
C6 |
H61 |
H63 |
109.5 |
119.9 |
H62 |
C6 |
C5 |
O5 |
73.5 |
60.1 |
H62 |
C6 |
C5 |
H5 |
188.6 |
180.0 |
C5 |
C6 |
H62 |
H61 |
233.1 |
239.9 |
C5 |
C6 |
H62 |
H63 |
116.6 |
119.9 |
H61 |
C6 |
H62 |
H63 |
243.4 |
240.0 |
H63 |
C6 |
C5 |
O5 |
183.1 |
180.0 |
H63 |
C6 |
C5 |
H5 |
298.1 |
299.9 |
C5 |
C6 |
H63 |
H61 |
126.9 |
120.1 |
C5 |
C6 |
H63 |
H62 |
243.4 |
240.1 |
H61 |
C6 |
H63 |
H62 |
116.5 |
120.0 |
HO2 |
O2 |
C2 |
H2 |
62.3 |
180.0 |
HO3 |
O3 |
C3 |
H3 |
59.0 |
180.0 |
HO4 |
O4 |
C4 |
H4 |
298.8 |
180.0 |
HO5 |
O5 |
C5 |
H5 |
297.3 |
180.0 |