PDB Chemical Component RNA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RNA

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C	C1	1.384	1.415
C	C3	1.390	1.376
C	H	1.080	1.081
C1	C2	1.396	1.363
C1	H1	1.080	1.081
C2	C16	1.517	1.436
C2	O	1.385	1.347
O	C3	1.382	1.359
C3	C4	1.513	1.470
C4	H41	1.100	1.105
C4	H42	1.100	1.106
C4	H43	1.100	1.105
C5	C15	1.377	1.486
C5	C16	1.546	1.334
C5	S	1.745	1.714
S	C6	1.722	1.756
C6	N	1.410	1.409
C6	N1	1.358	1.298
N	S1	1.712	1.696
N	HN	1.000	1.025
S1	C7	1.735	1.746
S1	O14	1.589	1.457
S1	O1	1.589	1.458
C7	C12	1.419	1.395
C7	C8	1.412	1.395
C8	C9	1.424	1.395
C8	H8	1.079	1.088
C9	C10	1.431	1.396
C9	H9	1.080	1.086
C10	C13	1.534	1.491
C10	C11	1.430	1.395
C11	C12	1.423	1.395
C11	H11	1.080	1.086
C12	H12	1.080	1.087
C13	H131	1.100	1.097
C13	H132	1.100	1.098
C13	H133	1.099	1.098
C15	N1	1.366	1.382
C15	O2	1.382	1.224
C16	H16	1.080	1.091

Bond Angles for RNA

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	C	C3	108.0	106.1
C1	C	H	126.0	127.4
C	C1	C2	108.0	105.4
C	C1	H1	126.0	127.1
C3	C	H	126.0	126.5
C	C3	O	108.0	110.6
C	C3	C4	127.0	133.2
C2	C1	H1	126.0	127.5
C1	C2	C16	127.5	126.6
C1	C2	O	107.6	112.0
O	C2	C16	124.9	121.4
C2	C16	C5	114.1	124.7
C2	C16	H16	123.0	117.6
C2	O	C3	108.4	105.9
O	C3	C4	125.0	116.3
C3	C4	H41	109.5	111.4
C3	C4	H42	109.5	112.3
C3	C4	H43	109.5	112.3
H41	C4	H42	109.5	107.3
H41	C4	H43	109.4	107.4
H42	C4	H43	109.5	105.8
C15	C5	C16	126.8	123.9
S	C5	C15	111.4	110.1
C5	C15	N1	114.8	111.2
C5	C15	O2	123.4	123.3
S	C5	C16	121.7	126.1
C5	C16	H16	122.9	117.7
C5	S	C6	88.0	89.8
S	C6	N	121.5	117.9
S	C6	N1	115.8	115.3
N	C6	N1	122.7	126.8
C6	N	S1	123.0	117.7
C6	N	HN	118.5	119.0
C6	N1	C15	110.0	113.7
S1	N	HN	118.5	123.2
N	S1	C7	110.6	101.3
N	S1	O14	105.9	109.2
N	S1	O1	109.2	109.1
C7	S1	O14	110.9	108.2
C7	S1	O1	111.1	108.2
S1	C7	C12	118.5	120.0
S1	C7	C8	119.7	120.0
O14	S1	O1	109.0	119.3
C8	C7	C12	121.8	120.0
C7	C12	C11	119.2	120.0
C7	C12	H12	120.4	120.6
C7	C8	C9	118.9	120.1
C7	C8	H8	120.6	120.6
C9	C8	H8	120.6	119.4
C8	C9	C10	120.5	119.9
C8	C9	H9	119.8	119.5
C10	C9	H9	119.7	120.5
C9	C10	C13	120.7	120.0
C9	C10	C11	119.5	120.0
C11	C10	C13	119.8	120.0
C10	C13	H131	109.5	110.4
C10	C13	H132	109.5	111.3
C10	C13	H133	109.4	111.3
C10	C11	C12	120.1	120.0
C10	C11	H11	119.9	120.5
C12	C11	H11	120.0	119.5
C11	C12	H12	120.4	119.4
H131	C13	H132	109.5	108.5
H131	C13	H133	109.5	108.5
H132	C13	H133	109.5	106.8
N1	C15	O2	121.8	125.5

Torsion Angles for RNA

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C	C1	H	180.0	180.0
C1	C	C3	O	359.9	360.0
C1	C	C3	C4	179.5	180.0
C2	C1	C	H1	180.0	180.1
C	C1	C2	C16	180.4	180.1
C	C1	C2	O	0.2	0.0
C1	C	C3	H	180.0	180.0
C3	C	C1	C2	359.9	0.0
C3	C	C1	H1	179.9	179.9
C2	O	C3	C	0.3	0.0
O	C3	C	C4	180.4	180.0
C	C3	C4	H41	134.9	332.9
C	C3	C4	H42	254.9	93.4
C	C3	C4	H43	15.0	212.4
C1	C	H	C3	180.0	180.0
H	C	C1	C2	179.9	180.0
H	C	C1	H1	359.9	359.9
H	C	C3	O	179.9	180.0
H	C	C3	C4	359.5	0.0
C2	C1	C	C3	359.9	0.0
C2	C1	C	H	179.9	180.0
C	C1	C2	H1	180.0	179.9
O	C2	C1	C16	179.8	179.9
C1	C2	C16	C5	57.5	211.7
C1	C2	C16	H16	237.5	29.9
C1	C2	O	C3	359.7	360.0
H1	C1	C	C3	179.9	179.9
H1	C1	C	H	359.9	359.9
C	C1	H1	C2	180.0	180.1
H1	C1	C2	C16	0.4	0.2
H1	C1	C2	O	180.2	180.1
C16	C2	C1	H1	0.4	0.2
C1	C2	C16	O	179.8	179.9
C16	C2	O	C3	179.6	179.9
C15	C5	C16	C2	221.0	179.9
S	C5	C16	C2	41.0	359.9
C5	C16	C2	H16	180.0	181.8
C	C3	O	C2	0.3	0.0
O	C2	C1	H1	180.2	180.1
C1	C2	O	C16	180.2	180.1
O	C2	C16	C5	237.7	31.8
O	C2	C16	H16	57.7	210.0
C2	O	C3	C4	180.6	180.0
O	C3	C	H	179.9	180.0
C	C3	O	C4	179.6	180.0
C3	O	C2	C16	179.6	179.9
O	C3	C4	H41	314.5	152.9
O	C3	C4	H42	74.5	273.4
O	C3	C4	H43	194.5	32.4
C4	C3	C	H	359.5	0.0
C	C3	C4	O	180.4	180.0
H41	C4	C3	H42	240.0	239.5
H41	C4	C3	H43	119.9	120.5
H42	C4	C3	H43	240.0	241.0
C3	C4	H41	H42	120.0	123.3
C3	C4	H41	H43	240.0	236.6
H42	C4	H41	H43	120.0	113.3
C3	C4	H42	H41	240.0	237.2
C3	C4	H42	H43	120.0	122.8
H41	C4	H42	H43	240.0	245.6
C3	C4	H43	H41	120.0	122.8
C3	C4	H43	H42	240.0	237.2
H41	C4	H43	H42	120.0	114.4
C2	C16	C5	C15	221.0	179.9
S	C5	C15	C16	179.9	180.0
C15	C5	C16	H16	41.0	1.8
C15	C5	S	C6	359.7	0.0
C6	N1	C15	C5	359.9	0.0
N1	C15	C5	O2	180.2	179.9
C2	C16	C5	H16	180.0	178.2
S	C5	C16	C15	180.1	180.0
C16	C5	C15	N1	180.4	180.0
C16	C5	C15	O2	0.1	0.1
C16	C5	S	C6	179.7	180.0
C2	C16	C5	S	41.0	359.9
C15	C5	S	C16	180.1	180.0
S	C5	C15	N1	0.3	360.0
S	C5	C15	O2	180.1	180.1
S	C5	C16	H16	221.0	181.8
C5	S	C6	N	180.3	180.0
C5	S	C6	N1	0.2	0.0
C6	S	C5	C15	359.7	0.0
C6	S	C5	C16	179.7	180.0
N	C6	S	N1	180.1	180.0
S	C6	N	S1	28.3	180.3
S	C6	N	HN	208.3	360.0
S	C6	N1	C15	359.9	360.0
S	C6	N	N1	179.9	180.0
N	C6	N1	C15	179.8	180.0
S1	N	C6	HN	180.0	180.3
C6	N	S1	C7	53.8	277.0
C6	N	S1	O14	293.6	31.0
C6	N	S1	O1	176.4	163.0
C5	C15	N1	C6	359.9	0.0
S	C6	N1	N	180.1	180.0
N1	C6	N	S1	208.4	0.3
N1	C6	N	HN	28.4	180.0
C6	N1	C15	O2	180.1	179.9
S1	N	C6	N1	208.4	0.3
C6	N	S1	HN	180.0	179.7
C7	S1	N	O14	120.2	246.0
C7	S1	N	O1	237.4	114.0
N	S1	C7	C12	71.1	90.1
N	S1	C7	C8	250.9	270.0
O14	S1	N	O1	117.3	228.0
HN	N	C6	N1	28.4	180.0
C6	N	HN	S1	180.0	180.3
HN	N	S1	C7	233.8	97.3
HN	N	S1	O14	113.6	211.3
HN	N	S1	O1	356.4	343.3
C7	S1	N	HN	233.8	97.3
N	S1	C7	O14	242.8	114.7
N	S1	C7	O1	121.4	245.4
O14	S1	C7	O1	238.6	130.6
C8	C7	S1	C12	179.9	179.9
S1	C7	C12	C11	180.0	180.0
S1	C7	C12	H12	359.9	360.0
S1	C7	C8	C9	180.1	180.0
S1	C7	C8	H8	0.1	0.1
O14	S1	N	HN	113.6	211.3
N	S1	O14	C7	120.0	250.5
N	S1	O14	O1	242.6	126.3
C7	S1	O14	O1	122.6	235.8
O14	S1	C7	C12	188.2	335.3
O14	S1	C7	C8	8.1	155.3
O1	S1	N	HN	356.4	343.3
N	S1	O1	C7	237.7	109.5
N	S1	O1	O14	115.3	233.7
C7	S1	O1	O14	237.5	124.2
O1	S1	C7	C12	309.6	204.7
O1	S1	C7	C8	129.5	24.6
C12	C7	S1	O14	188.2	335.3
C12	C7	S1	O1	309.6	204.7
S1	C7	C12	C8	179.9	179.9
C12	C7	C8	C9	360.0	360.0
C12	C7	C8	H8	180.0	180.1
C10	C11	C12	C7	359.8	-0.0
C7	C12	C11	H11	179.8	180.0
C11	C12	C7	H12	180.0	180.0
C8	C7	S1	O14	8.1	155.3
C8	C7	S1	O1	129.5	24.6
S1	C7	C8	C12	180.1	180.1
C8	C7	C12	C11	0.1	0.0
C8	C7	C12	H12	180.1	180.1
C9	C8	C7	H8	180.0	179.9
C7	C8	C9	C10	0.0	360.0
C7	C8	C9	H9	180.0	180.1
C9	C8	C7	C12	360.0	360.0
C7	C8	C9	H8	180.0	180.1
C10	C9	C8	H9	180.0	179.9
C8	C9	C10	C13	179.8	180.0
C8	C9	C10	C11	359.9	0.1
H8	C8	C7	C12	180.0	180.1
C7	C8	H8	C9	180.0	179.9
H8	C8	C9	C10	180.0	179.9
H8	C8	C9	H9	0.0	360.0
C10	C9	C8	H8	180.0	179.9
C8	C9	C10	H9	180.0	180.1
C11	C10	C9	C13	180.2	180.1
C9	C10	C13	H131	253.8	50.5
C9	C10	C13	H132	13.8	171.0
C9	C10	C13	H133	133.8	290.0
C9	C10	C11	C12	0.1	359.9
C9	C10	C11	H11	180.2	179.9
H9	C9	C8	H8	0.0	360.0
C8	C9	H9	C10	180.0	179.9
H9	C9	C10	C13	359.8	359.9
H9	C9	C10	C11	179.9	180.0
C13	C10	C9	H9	359.8	359.9
C9	C10	C13	C11	180.2	180.1
C13	C10	C11	C12	180.3	180.0
C13	C10	C11	H11	0.3	360.0
H131	C13	C10	H132	240.0	239.5
H131	C13	C10	H133	120.0	120.5
H132	C13	C10	H133	240.0	241.0
C7	C12	C11	C10	359.8	-0.0
C11	C10	C9	H9	179.9	180.0
C9	C10	C11	C13	179.8	179.9
C11	C10	C13	H131	73.6	230.4
C11	C10	C13	H132	193.6	351.0
C11	C10	C13	H133	313.6	109.9
C12	C11	C10	H11	180.0	180.0
C10	C11	C12	H12	179.9	180.0
C7	C12	C11	H12	180.0	180.0
C12	C11	C10	C13	180.3	180.0
C10	C11	C12	H11	180.0	180.0
H11	C11	C10	C13	0.3	360.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C12	H12	359.9	0.0
C7	C12	H12	C11	180.0	180.0
H12	C12	C11	H11	359.9	0.0
C10	C13	H131	H132	120.0	122.2
C10	C13	H131	H133	240.0	237.8
H132	C13	H131	H133	120.0	115.6
C10	C13	H132	H131	240.0	238.4
C10	C13	H132	H133	120.0	121.7
H131	C13	H132	H133	240.0	243.3
C10	C13	H133	H131	120.0	121.6
C10	C13	H133	H132	240.0	238.4
H131	C13	H133	H132	120.0	116.7
N1	C15	C5	C16	180.4	180.0
C5	C15	N1	O2	179.8	180.1
O2	C15	C5	C16	0.1	0.1
C5	C15	O2	N1	180.2	179.9
C2	C16	H16	C5	180.0	181.7