PDB Chemical Component RN1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for RN1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C02 |
C01 |
1.399 |
1.392 |
| C02 |
C03 |
1.393 |
1.362 |
| C01 |
C06 |
1.393 |
1.361 |
| C03 |
C04 |
1.427 |
1.406 |
| C06 |
C05 |
1.428 |
1.403 |
| C04 |
C05 |
1.364 |
1.417 |
| C04 |
C07 |
1.427 |
1.405 |
| C05 |
C10 |
1.427 |
1.410 |
| C07 |
C08 |
1.391 |
1.361 |
| C10 |
O11 |
1.374 |
1.358 |
| C10 |
C09 |
1.394 |
1.367 |
| C08 |
C09 |
1.397 |
1.392 |
| O11 |
C12 |
1.378 |
1.429 |
| C14 |
O16 |
1.379 |
1.428 |
| C14 |
C13 |
1.491 |
1.531 |
| C12 |
C13 |
1.491 |
1.531 |
| O15 |
C13 |
1.377 |
1.429 |
| C01 |
H1 |
1.080 |
1.080 |
| C02 |
H2 |
1.080 |
1.081 |
| C03 |
H3 |
1.080 |
1.080 |
| C06 |
H4 |
1.080 |
1.081 |
| C07 |
H5 |
1.080 |
1.080 |
| C08 |
H6 |
1.080 |
1.080 |
| C09 |
H7 |
1.080 |
1.080 |
| C12 |
H8 |
1.100 |
1.089 |
| C12 |
H9 |
1.100 |
1.090 |
| C13 |
H10 |
1.100 |
1.089 |
| C14 |
H11 |
1.100 |
1.090 |
| C14 |
H12 |
1.100 |
1.090 |
| O15 |
H13 |
0.950 |
0.968 |
| O16 |
H14 |
0.950 |
0.968 |
Bond Angles for RN1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C02 |
C01 |
C06 |
120.0 |
121.0 |
| C02 |
C01 |
H1 |
120.0 |
119.5 |
| C02 |
C03 |
C04 |
120.0 |
119.6 |
| C03 |
C02 |
H2 |
120.0 |
119.5 |
| C02 |
C03 |
H3 |
120.0 |
120.2 |
| C01 |
C06 |
C05 |
120.0 |
119.7 |
| C06 |
C01 |
H1 |
120.0 |
119.5 |
| C01 |
C06 |
H4 |
120.0 |
120.2 |
| C03 |
C04 |
C05 |
120.0 |
119.3 |
| C03 |
C04 |
C07 |
120.0 |
121.3 |
| C04 |
C03 |
H3 |
120.0 |
120.2 |
| C06 |
C05 |
C10 |
120.0 |
121.3 |
| C05 |
C04 |
C07 |
120.0 |
119.4 |
| C04 |
C05 |
C10 |
120.0 |
119.3 |
| C04 |
C07 |
C08 |
120.0 |
119.8 |
| C04 |
C07 |
H5 |
120.0 |
120.1 |
| C05 |
C10 |
O11 |
119.8 |
120.3 |
| C05 |
C10 |
C09 |
120.0 |
119.5 |
| C07 |
C08 |
C09 |
120.1 |
121.1 |
| C08 |
C07 |
H5 |
120.0 |
120.1 |
| C07 |
C08 |
H6 |
120.0 |
119.5 |
| C10 |
O11 |
C12 |
119.9 |
117.0 |
| C10 |
C09 |
H7 |
120.0 |
119.5 |
| C09 |
C08 |
H6 |
120.0 |
119.5 |
| C08 |
C09 |
H7 |
120.0 |
119.5 |
| O11 |
C12 |
C13 |
117.5 |
109.4 |
| O11 |
C12 |
H8 |
107.4 |
109.5 |
| O11 |
C12 |
H9 |
107.4 |
109.5 |
| O16 |
C14 |
H11 |
107.4 |
109.5 |
| O16 |
C14 |
H12 |
107.4 |
109.5 |
| C14 |
O16 |
H14 |
109.5 |
114.0 |
| C14 |
C13 |
H10 |
108.9 |
109.5 |
| C13 |
C12 |
H8 |
107.4 |
109.4 |
| C13 |
C12 |
H9 |
107.4 |
109.5 |
| C12 |
C13 |
H10 |
108.9 |
109.5 |
| O15 |
C13 |
H10 |
110.6 |
109.5 |
| H8 |
C12 |
H9 |
109.5 |
109.5 |
| H11 |
C14 |
H12 |
109.5 |
109.5 |
Torsion Angles for RN1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C02 |
C01 |
C06 |
C05 |
0.0 |
0.0 |
| C06 |
C01 |
C02 |
H1 |
180.0 |
180.3 |
| C02 |
C01 |
C06 |
H4 |
180.0 |
179.7 |
| C03 |
C02 |
C01 |
C06 |
360.0 |
0.0 |
| C03 |
C02 |
C01 |
H1 |
180.0 |
179.8 |
| C02 |
C03 |
C04 |
C05 |
360.0 |
0.1 |
| C02 |
C03 |
C04 |
C07 |
180.0 |
180.0 |
| C04 |
C03 |
C02 |
H3 |
180.0 |
180.0 |
| C02 |
C01 |
C06 |
H1 |
180.0 |
179.7 |
| C01 |
C06 |
C05 |
C10 |
180.0 |
180.0 |
| C04 |
C03 |
C02 |
H2 |
180.0 |
180.0 |
| C02 |
C03 |
C04 |
H3 |
180.0 |
180.0 |
| C05 |
C04 |
C03 |
C07 |
180.0 |
180.1 |
| C03 |
C04 |
C05 |
C10 |
180.0 |
179.9 |
| C03 |
C04 |
C07 |
C08 |
180.0 |
180.1 |
| C03 |
C04 |
C07 |
H5 |
360.0 |
0.1 |
| C05 |
C06 |
C01 |
H1 |
180.0 |
180.3 |
| C01 |
C06 |
C05 |
H4 |
180.0 |
179.7 |
| C06 |
C05 |
C04 |
C07 |
180.0 |
180.1 |
| C04 |
C05 |
C06 |
C10 |
180.0 |
179.9 |
| C06 |
C05 |
C10 |
O11 |
359.9 |
359.9 |
| C06 |
C05 |
C10 |
C09 |
180.0 |
179.9 |
| C01 |
C06 |
C05 |
C04 |
360.0 |
360.0 |
| C03 |
C04 |
C05 |
C07 |
180.0 |
179.9 |
| C05 |
C04 |
C03 |
H3 |
180.0 |
180.0 |
| C06 |
C05 |
C04 |
C10 |
180.0 |
180.1 |
| C05 |
C04 |
C07 |
C08 |
360.0 |
360.0 |
| C05 |
C04 |
C07 |
H5 |
179.9 |
180.0 |
| C04 |
C05 |
C10 |
O11 |
180.0 |
179.9 |
| C04 |
C05 |
C10 |
C09 |
0.0 |
359.9 |
| C03 |
C04 |
C07 |
C05 |
180.0 |
180.1 |
| C07 |
C04 |
C03 |
H3 |
359.9 |
359.9 |
| C07 |
C04 |
C05 |
C10 |
0.0 |
0.0 |
| C04 |
C07 |
C08 |
C09 |
0.1 |
0.1 |
| C08 |
C07 |
C04 |
H5 |
180.0 |
180.0 |
| C04 |
C07 |
C08 |
H6 |
180.0 |
180.0 |
| C10 |
C05 |
C04 |
C07 |
0.0 |
0.0 |
| C05 |
C10 |
O11 |
C12 |
208.1 |
180.0 |
| C05 |
C10 |
C09 |
H7 |
180.0 |
180.1 |
| C04 |
C07 |
C08 |
H5 |
180.0 |
180.0 |
| C09 |
C08 |
C07 |
H6 |
180.0 |
180.1 |
| C07 |
C08 |
C09 |
H7 |
180.0 |
179.9 |
| C05 |
C10 |
O11 |
C09 |
180.1 |
180.0 |
| O11 |
C10 |
C09 |
H7 |
0.0 |
0.0 |
| C10 |
O11 |
C12 |
C13 |
163.0 |
180.0 |
| C10 |
O11 |
C12 |
H8 |
284.2 |
300.0 |
| C10 |
O11 |
C12 |
H9 |
41.9 |
60.1 |
| C05 |
C10 |
C09 |
O11 |
179.9 |
180.0 |
| C10 |
C09 |
C08 |
H6 |
180.0 |
180.0 |
| C08 |
C09 |
C10 |
H7 |
180.0 |
180.0 |
| C05 |
C10 |
C09 |
C08 |
360.0 |
0.1 |
| C09 |
C08 |
C07 |
H5 |
180.1 |
180.1 |
| C07 |
C08 |
C09 |
H6 |
180.0 |
179.9 |
| C10 |
C09 |
C08 |
H7 |
180.0 |
180.0 |
| C13 |
C12 |
O11 |
H8 |
238.8 |
240.0 |
| C13 |
C12 |
O11 |
H9 |
121.2 |
120.0 |
| O11 |
C12 |
C13 |
H10 |
147.0 |
55.0 |
| H8 |
C12 |
O11 |
H9 |
242.3 |
239.9 |
| O16 |
C14 |
C13 |
H10 |
348.6 |
305.0 |
| H11 |
C14 |
O16 |
H12 |
242.4 |
120.1 |
| C14 |
C13 |
C12 |
H8 |
145.1 |
55.0 |
| C14 |
C13 |
C12 |
H9 |
27.4 |
295.0 |
| C12 |
C13 |
C14 |
H10 |
240.8 |
240.0 |
| O15 |
C13 |
C14 |
H10 |
120.9 |
120.0 |
| O11 |
C12 |
C13 |
H8 |
121.1 |
120.0 |
| O11 |
C12 |
C13 |
H9 |
238.8 |
240.0 |
| C14 |
C13 |
C12 |
H10 |
119.2 |
120.0 |
| O15 |
C13 |
C12 |
H10 |
239.1 |
240.0 |
| H8 |
C12 |
C13 |
H9 |
117.7 |
120.0 |
| C14 |
C13 |
O15 |
H10 |
240.1 |
240.0 |
| O15 |
C13 |
C12 |
H8 |
264.9 |
175.0 |
| O15 |
C13 |
C12 |
H9 |
147.2 |
55.0 |
| C12 |
C13 |
O15 |
H10 |
119.9 |
120.0 |
| C02 |
C01 |
H1 |
C06 |
180.0 |
180.3 |
| H1 |
C01 |
C06 |
C05 |
180.0 |
180.3 |
| H1 |
C01 |
C06 |
H4 |
0.0 |
360.0 |
| H2 |
C02 |
C01 |
C06 |
180.0 |
180.0 |
| H2 |
C02 |
C01 |
H1 |
360.0 |
359.7 |
| H2 |
C02 |
C03 |
C04 |
180.0 |
180.0 |
| H2 |
C02 |
C03 |
H3 |
0.0 |
0.0 |
| C02 |
C03 |
H3 |
C04 |
180.0 |
180.0 |
| H3 |
C03 |
C02 |
H2 |
0.0 |
0.0 |
| H3 |
C03 |
C04 |
C05 |
180.0 |
180.0 |
| H3 |
C03 |
C04 |
C07 |
359.9 |
359.9 |
| C01 |
C06 |
H4 |
C05 |
180.0 |
180.3 |
| H4 |
C06 |
C01 |
H1 |
0.0 |
360.0 |
| H4 |
C06 |
C05 |
C10 |
0.0 |
0.3 |
| C04 |
C07 |
H5 |
C08 |
180.0 |
180.0 |
| H5 |
C07 |
C08 |
C09 |
180.1 |
180.1 |
| H5 |
C07 |
C08 |
H6 |
0.0 |
360.0 |
| C07 |
C08 |
H6 |
C09 |
180.0 |
180.1 |
| H6 |
C08 |
C07 |
H5 |
0.0 |
360.0 |
| H6 |
C08 |
C09 |
H7 |
0.0 |
0.0 |
| H7 |
C09 |
C08 |
H6 |
0.0 |
0.0 |
| O11 |
C12 |
H8 |
C13 |
232.7 |
240.0 |
| O11 |
C12 |
H8 |
H9 |
116.4 |
120.0 |
| C13 |
C12 |
H8 |
H9 |
243.6 |
240.0 |
| H8 |
C12 |
C13 |
H10 |
25.9 |
295.0 |
| O11 |
C12 |
H9 |
C13 |
127.3 |
120.0 |
| O11 |
C12 |
H9 |
H8 |
243.7 |
239.9 |
| C13 |
C12 |
H9 |
H8 |
116.4 |
120.0 |
| H9 |
C12 |
C13 |
H10 |
268.2 |
175.0 |
| H10 |
C13 |
C12 |
H8 |
25.9 |
295.0 |
| H10 |
C13 |
C12 |
H9 |
268.2 |
175.0 |
| O16 |
C14 |
H11 |
H12 |
116.3 |
240.0 |
| H11 |
C14 |
O16 |
H14 |
301.2 |
60.0 |
| H11 |
C14 |
C13 |
H10 |
227.4 |
65.0 |
| O16 |
C14 |
H12 |
H11 |
243.7 |
120.1 |
| H12 |
C14 |
O16 |
H14 |
58.8 |
299.9 |
| H12 |
C14 |
C13 |
H10 |
109.7 |
185.1 |
| H13 |
O15 |
C13 |
H10 |
299.8 |
180.0 |
| H14 |
O16 |
C14 |
H11 |
301.2 |
60.0 |
| H14 |
O16 |
C14 |
H12 |
58.8 |
299.9 |