PDB Chemical Component RJA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for RJA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1' C1 1.243 1.208
C1 O1 1.247 1.343
C1 C2 1.518 1.507
O1 HO1 0.950 0.967
C3 C2 1.526 1.529
C2 H2 1.100 1.090
C2 H2A 1.100 1.091
C5 O2 1.427 1.429
O2 HO2 0.950 0.967
C4 C3 1.529 1.530
C3 H3 1.100 1.091
C3 H3A 1.100 1.090
O3 C16 1.431 1.430
O3 HO3 0.950 0.967
C5 C4 1.522 1.530
C4 H4 1.100 1.091
C4 H4A 1.100 1.091
C19 O4 1.419 1.430
O4 HO4 0.950 0.967
C6 C5 1.512 1.507
C5 H5 1.100 1.090
O5 C17 1.412 1.430
O5 C21 1.419 1.429
C7 C6 1.327 1.329
C6 H6 1.080 1.080
C8 C7 1.476 1.470
C7 H7 1.080 1.080
C25 C8 1.497 1.508
C8 C9 1.330 1.328
C9 C10 1.501 1.507
C9 H9 1.079 1.081
C11 C10 1.521 1.529
C10 C26 1.518 1.530
C10 H10 1.100 1.090
C11 C12 1.503 1.508
C11 H11 1.100 1.090
C11 H11A 1.100 1.090
C12 C27 1.494 1.506
C12 C13 1.329 1.329
C13 C14 1.452 1.471
C13 H13 1.080 1.080
C14 C15 1.320 1.329
C14 H14 1.080 1.081
C15 C16 1.502 1.506
C15 H15 1.080 1.080
C16 C17 1.518 1.531
C16 H16 1.100 1.090
C17 C18 1.507 1.530
C17 H17 1.100 1.090
C18 C19 1.514 1.532
C18 H18 1.100 1.089
C18 H18A 1.100 1.090
C20 C19 1.513 1.532
C19 H19 1.100 1.090
C21 C20 1.520 1.531
C28 C20 1.517 1.530
C20 H20 1.100 1.089
C22 C21 1.505 1.506
C21 H21 1.100 1.090
C23 C22 1.319 1.311
C22 H22 1.080 1.080
C24 C23 1.503 1.506
C23 H23 1.080 1.079
C24 H24 1.100 1.090
C24 H24A 1.100 1.091
C24 H24B 1.100 1.090
C25 H25 1.100 1.090
C25 H25A 1.100 1.090
C25 H25B 1.100 1.089
C26 H26 1.100 1.089
C26 H26A 1.100 1.090
C26 H26B 1.100 1.090
C27 H27 1.100 1.090
C27 H27A 1.100 1.089
C27 H27B 1.100 1.090
C28 H28 1.100 1.090
C28 H28A 1.100 1.091
C28 H28B 1.100 1.090

Bond Angles for RJA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C1 C2 119.6 120.0
C1 O1 HO1 109.5 116.9
C1 C2 H2 108.6 109.5
C1 C2 H2A 108.6 109.5
C3 C2 H2 108.6 109.5
C3 C2 H2A 108.6 109.4
H2 C2 H2A 109.5 109.5
C5 O2 HO2 109.5 114.0
C4 C3 H3 109.7 109.4
C4 C3 H3A 109.7 109.4
H3 C3 H3A 109.5 109.4
C16 O3 HO3 109.5 114.0
O3 C16 C15 110.7 109.5
O3 C16 C17 108.9 109.4
O3 C16 H16 112.2 109.5
C5 C4 H4 108.9 109.5
C5 C4 H4A 108.9 109.5
H4 C4 H4A 109.5 109.4
C19 O4 HO4 109.5 114.0
C6 C5 H5 107.9 109.5
C17 O5 C21 115.3 114.1
O5 C17 C16 109.0 109.5
O5 C17 C18 112.0 109.4
O5 C17 H17 109.1 109.4
O5 C21 C20 112.1 109.4
O5 C21 H21 109.1 109.4
C7 C6 H6 117.8 120.1
C8 C7 H7 120.3 120.0
C8 C9 C10 121.3 120.0
C8 C9 H9 119.3 120.0
C10 C9 H9 119.4 120.0
C9 C10 C26 108.5 109.5
C9 C10 H10 109.2 109.4
C11 C10 C26 111.0 109.5
C11 C10 H10 108.9 109.5
C26 C10 H10 109.0 109.5
C10 C26 H26 109.5 109.5
C10 C26 H26A 109.5 109.5
C10 C26 H26B 109.4 109.4
C12 C11 H11 110.0 109.5
C12 C11 H11A 110.0 109.4
C11 C12 C27 120.0 120.0
C11 C12 C13 119.0 119.9
H11 C11 H11A 109.5 109.5
C13 C12 C27 121.0 120.0
C12 C27 H27 109.5 109.5
C12 C27 H27A 109.5 109.5
C12 C27 H27B 109.5 109.5
C12 C13 C14 122.1 120.0
C12 C13 H13 118.9 120.1
C14 C13 H13 118.9 120.0
C13 C14 C15 117.0 120.0
C13 C14 H14 121.5 120.0
C15 C14 H14 121.5 120.0
C14 C15 C16 121.9 120.0
C14 C15 H15 119.0 120.0
C16 C15 H15 119.0 120.0
C15 C16 C17 102.6 109.5
C15 C16 H16 111.1 109.5
C17 C16 H16 110.9 109.4
C16 C17 C18 111.1 109.5
C16 C17 H17 107.7 109.5
C18 C17 H17 107.8 109.5
C17 C18 C19 110.2 109.1
C17 C18 H18 109.3 109.6
C17 C18 H18A 109.3 109.5
C19 C18 H18 109.3 109.5
C19 C18 H18A 109.3 109.5
C18 C19 H19 109.9 109.6
H18 C18 H18A 109.5 109.6
C20 C19 H19 109.9 109.6
C21 C20 H20 107.3 109.5
C28 C20 H20 107.3 109.6
C22 C21 H21 108.0 109.5
C23 C22 H22 120.8 119.9
C24 C23 H23 119.2 120.0
H24 C24 H24A 109.5 109.5
H24 C24 H24B 109.4 109.5
H24A C24 H24B 109.5 109.4
H25 C25 H25A 109.5 109.5
H25 C25 H25B 109.4 109.5
H25A C25 H25B 109.5 109.5
H26 C26 H26A 109.5 109.5
H26 C26 H26B 109.5 109.5
H26A C26 H26B 109.4 109.5
H27 C27 H27A 109.4 109.5
H27 C27 H27B 109.5 109.4
H27A C27 H27B 109.5 109.4
H28 C28 H28A 109.4 109.5
H28 C28 H28B 109.5 109.5
H28A C28 H28B 109.5 109.4

Torsion Angles for RJA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1' C1 O1 HO1 0.0 359.7
O1' C1 C2 H2 81.2 120.3
O1' C1 C2 H2A 200.2 240.3
O1 C1 C2 H2 261.9 300.0
O1 C1 C2 H2A 20.9 60.0
C2 C1 O1 HO1 179.3 180.0
C3 C2 C1 H2 239.5 240.0
C3 C2 C1 H2A 120.5 120.0
H2 C2 C1 H2A 241.0 240.0
HO1 O1 C1 C2 179.3 180.0
C1 C2 C3 H2 120.5 120.0
C1 C2 C3 H2A 239.5 240.0
H2 C2 C3 H2A 119.0 120.0
C1 C2 H2 H2A 118.5 120.0
C3 C2 H2 H2A 241.6 240.0
C1 C2 H2A H2 241.5 240.0
C3 C2 H2A H2 118.4 120.0
C4 C3 C2 H2 192.3 60.0
C4 C3 C2 H2A 73.3 300.0
H3 C3 C4 H3A 120.2 119.9
H3 C3 C2 H2 312.2 180.0
H3 C3 C2 H2A 193.2 60.0
C4 C3 H3 H3A 239.6 240.1
H3A C3 C2 H2 72.4 300.0
H3A C3 C2 H2A 313.4 180.0
C4 C3 H3A H3 120.4 119.9
O5 C17 C16 O3 10.0 65.0
C14 C15 C16 O3 127.6 5.0
O3 C16 C15 H15 307.5 185.0
C15 C16 O3 C17 112.1 120.0
C15 C16 O3 H16 235.2 239.9
C17 C16 O3 H16 123.1 120.0
O3 C16 C17 C18 246.1 305.1
O3 C16 C17 H17 128.2 185.0
HO3 O3 C16 C15 180.0 60.0
HO3 O3 C16 C17 67.9 300.0
HO3 O3 C16 H16 304.7 180.0
C4 C5 O2 HO2 180.0 60.0
C5 C4 C3 H3 37.6 60.0
C5 C4 C3 H3A 277.3 300.0
H4 C4 C5 H4A 119.4 119.9
H4 C4 C3 H3 157.9 180.0
H4 C4 C3 H3A 37.7 60.1
C5 C4 H4 H4A 241.0 240.1
H4A C4 C3 H3 277.2 299.9
H4A C4 C3 H3A 157.0 180.0
C5 C4 H4A H4 119.0 119.9
C6 C5 O2 HO2 55.3 300.0
C6 C5 C4 H4 61.6 64.9
C6 C5 C4 H4A 302.2 305.0
H5 C5 O2 HO2 297.9 180.0
H5 C5 C4 H4 180.9 185.0
H5 C5 C4 H4A 61.5 65.1
O3 C16 C17 O5 10.0 65.0
C17 O5 C21 C20 352.0 61.2
C17 O5 C21 H21 111.3 181.1
C15 C16 C17 O5 252.7 305.0
O5 C17 C16 H16 133.9 185.0
C16 C17 O5 C18 236.6 240.0
C16 C17 O5 H17 117.3 120.0
C18 C17 O5 H17 240.7 240.0
O5 C17 C18 C19 58.1 57.6
O5 C17 C18 H18 178.2 177.5
O5 C17 C18 H18A 298.0 297.8
C21 O5 C17 C16 186.9 178.8
C21 O5 C17 C18 310.3 298.8
C21 O5 C17 H17 69.6 58.9
O5 C21 C20 H20 173.1 62.2
C22 C21 O5 H21 117.9 120.0
C7 C6 C5 H5 255.4 359.9
H6 C6 C5 H5 75.4 180.0
C8 C7 C6 H6 359.4 360.0
H7 C7 C6 H6 179.4 180.0
C25 C8 C7 H7 175.4 174.8
C25 C8 C9 H9 0.1 6.2
C9 C8 C7 H7 356.1 354.8
C10 C9 C8 H9 180.0 180.0
C8 C9 C10 C26 239.1 246.1
C8 C9 C10 H10 357.9 6.1
C8 C9 C10 H9 180.0 180.0
C11 C10 C9 C26 238.3 240.0
C11 C10 C9 H10 119.6 120.0
C26 C10 C9 H10 241.3 240.0
C9 C10 C26 H26 180.0 59.9
C9 C10 C26 H26A 300.0 180.0
C9 C10 C26 H26B 60.0 300.0
C8 C9 H9 C10 180.0 180.0
H9 C9 C10 C26 59.1 66.1
H9 C9 C10 H10 177.8 186.1
C11 C10 C9 H9 297.4 306.1
C9 C10 C11 C26 120.2 120.0
C9 C10 C11 H10 240.2 240.1
C26 C10 C11 H10 120.0 120.0
C11 C10 C26 H26 301.1 180.0
C11 C10 C26 H26A 61.1 300.0
C11 C10 C26 H26B 181.1 60.0
C26 C10 C9 H9 59.1 66.1
C9 C10 C26 H10 118.9 119.9
C11 C10 C26 H10 240.0 240.0
H26 C26 C10 H26A 240.0 239.9
H26 C26 C10 H26B 120.0 120.0
H26A C26 C10 H26B 240.0 240.0
H10 C10 C9 H9 177.8 186.1
C9 C10 H10 C26 241.6 240.0
C11 C10 H10 C26 121.3 120.0
H10 C10 C26 H26 61.1 300.0
H10 C10 C26 H26A 181.1 60.1
H10 C10 C26 H26B 301.1 180.1
C12 C11 C10 C26 66.3 65.0
C12 C11 C10 H10 306.3 304.9
H11 C11 C12 H11A 120.7 120.0
C13 C12 C11 C27 180.4 180.0
C11 C12 C27 H27 180.0 90.0
C11 C12 C27 H27A 300.0 210.0
C11 C12 C27 H27B 60.0 330.0
C11 C12 C13 C14 178.2 180.0
C11 C12 C13 H13 358.2 360.0
H11 C11 C10 C26 186.0 185.0
H11 C11 C10 H10 66.0 65.0
C12 C11 H11 H11A 239.0 240.1
H11 C11 C12 C27 320.2 155.0
H11 C11 C12 C13 140.7 335.0
H11A C11 C10 C26 306.7 305.0
H11A C11 C10 H10 186.6 185.0
C12 C11 H11A H11 121.0 120.0
H11A C11 C12 C27 199.6 35.0
H11A C11 C12 C13 20.0 215.0
C27 C12 C11 H11 320.2 155.0
C27 C12 C11 H11A 199.6 35.0
C11 C12 C27 C13 180.4 180.0
C27 C12 C13 C14 358.6 0.0
C27 C12 C13 H13 178.7 180.0
H27 C27 C12 H27A 240.0 240.0
H27 C27 C12 H27B 120.0 120.0
H27A C27 C12 H27B 240.0 240.0
C13 C12 C11 H11 140.7 335.0
C13 C12 C11 H11A 20.0 215.0
C11 C12 C13 C27 179.6 180.0
C13 C12 C27 H27 359.6 270.0
C13 C12 C27 H27A 119.6 30.0
C13 C12 C27 H27B 239.6 150.0
C14 C13 C12 H13 180.0 180.0
C12 C13 C14 C15 173.3 180.0
C12 C13 C14 H14 353.2 360.0
C14 C13 C12 C27 358.6 0.0
C12 C13 C14 H13 180.0 180.0
C15 C14 C13 H14 180.0 180.0
C13 C14 C15 C16 178.1 180.0
C13 C14 C15 H15 358.2 0.0
H13 C13 C12 C27 178.7 180.0
C12 C13 H13 C14 180.0 180.0
H13 C13 C14 C15 353.2 0.0
H13 C13 C14 H14 173.2 180.0
O3 C16 C15 C14 127.6 5.0
C15 C14 C13 H13 353.2 0.0
C13 C14 C15 H14 180.0 180.0
C16 C15 C14 H15 180.0 180.0
C14 C15 C16 C17 243.6 125.0
C14 C15 C16 H16 2.2 245.0
H14 C14 C13 H13 173.2 180.0
C13 C14 H14 C15 180.0 180.0
H14 C14 C15 C16 358.1 360.0
H14 C14 C15 H15 178.2 180.0
C15 C16 O3 HO3 180.0 60.0
O3 C16 C15 C17 243.9 240.0
O3 C16 C15 H16 125.4 120.0
O5 C17 C16 C15 252.7 305.0
C16 C15 C14 H14 358.1 360.0
C14 C15 C16 H15 180.0 180.0
C17 C16 C15 H16 241.4 240.0
C15 C16 C17 C18 128.7 185.1
C15 C16 C17 H17 10.8 65.0
H15 C15 C14 H14 178.2 180.0
C14 C15 H15 C16 180.0 180.0
H15 C15 C16 C17 63.6 305.0
H15 C15 C16 H16 182.2 64.9
C17 C16 O3 HO3 67.9 300.0
O3 C16 C17 C15 117.4 120.0
O3 C16 C17 H16 236.1 240.0
C16 C17 O5 C21 186.9 178.8
O5 C17 C16 C18 124.0 120.0
O5 C17 C16 H17 241.8 240.0
C17 C16 C15 H15 63.6 305.0
C15 C16 C17 H16 118.7 120.0
C18 C17 C16 H17 117.9 120.1
C16 C17 C18 C19 180.3 177.6
C16 C17 C18 H18 300.4 297.5
C16 C17 C18 H18A 60.2 57.7
H16 C16 O3 HO3 304.7 180.0
O3 C16 H16 C15 235.5 240.0
O3 C16 H16 C17 122.0 120.0
H16 C16 C15 H15 182.2 64.9
C15 C16 H16 C17 246.5 240.0
H16 C16 C17 C18 10.0 65.0
H16 C16 C17 H17 252.1 305.0
C18 C17 O5 C21 310.3 298.8
O5 C17 C18 C16 237.8 240.0
O5 C17 C18 H17 120.0 120.0
C18 C17 C16 H16 10.0 65.0
C16 C17 C18 H17 242.2 240.0
C19 C18 C17 H18 239.9 240.1
C19 C18 C17 H18A 120.1 119.8
C17 C18 C19 H19 114.0 63.0
H18 C18 C17 H18A 240.2 239.8
H17 C17 O5 C21 69.6 58.9
O5 C17 H17 C16 118.1 120.0
O5 C17 H17 C18 238.1 240.0
H17 C17 C16 H16 252.1 305.0
C16 C17 H17 C18 120.0 120.0
H17 C17 C18 C19 298.1 297.6
H17 C17 C18 H18 58.2 57.6
H17 C17 C18 H18A 177.9 177.8
C18 C19 O4 HO4 180.0 300.1
C19 C18 C17 H17 298.1 297.6
C17 C18 C19 H18 120.1 120.0
C17 C18 C19 H18A 239.9 240.1
H18 C18 C19 H18A 119.8 120.2
C20 C19 C18 H19 237.6 240.0
H18 C18 C17 H17 58.2 57.6
C17 C18 H18 C19 239.4 240.3
C17 C18 H18 H18A 119.7 120.2
C19 C18 H18 H18A 240.3 239.9
H18 C18 C19 H19 354.0 303.1
H18A C18 C17 H17 177.9 177.8
C17 C18 H18A C19 120.7 119.6
C17 C18 H18A H18 240.4 239.8
C19 C18 H18A H18 119.7 120.2
H18A C18 C19 H19 234.2 182.9
C20 C19 O4 HO4 60.0 180.5
O5 C21 C20 C19 56.6 302.3
C20 C19 C18 H18 231.6 183.1
C20 C19 C18 H18A 111.8 62.9
C18 C19 C20 H19 122.4 120.0
H19 C19 O4 HO4 300.0 60.3
H19 C19 C18 H18 354.0 303.1
H19 C19 C18 H18A 234.2 182.9
O5 C21 C20 H21 120.1 119.9
C21 C20 C19 H19 192.0 297.0
C28 C20 C21 H20 117.8 120.2
C28 C20 C19 H19 318.0 57.0
C21 C20 C28 H20 242.2 239.8
H20 C20 C19 H19 75.6 177.1
O5 C21 C22 H21 241.4 240.0
C22 C21 C20 H20 295.3 182.3
O5 C21 H21 C20 238.0 240.1
H21 C21 C20 H20 53.0 302.3
C23 C22 C21 H21 19.8 360.0
H22 C22 C21 H21 199.8 180.1
C24 C23 C22 H22 0.2 359.9
H23 C23 C22 H22 180.2 179.9
H24 C24 C23 H23 360.0 0.0
H24A C24 H24 H24B 120.0 120.0
H24A C24 C23 H23 120.0 120.1
H24 C24 H24A H24B 240.0 240.0
H24B C24 C23 H23 240.0 240.0
H24 C24 H24B H24A 120.0 120.0
H25A C25 H25 H25B 120.0 120.1
H25 C25 H25A H25B 240.1 240.0
H25 C25 H25B H25A 120.0 120.1
H26 C26 C10 H10 61.1 300.0
C10 C26 H26 H26A 120.0 120.0
C10 C26 H26 H26B 240.0 240.1
H26A C26 H26 H26B 120.0 120.0
H26A C26 C10 H10 181.1 60.1
C10 C26 H26A H26 240.0 240.0
C10 C26 H26A H26B 120.0 119.9
H26 C26 H26A H26B 240.0 240.0
H26B C26 C10 H10 301.1 180.1
C10 C26 H26B H26 120.0 120.0
C10 C26 H26B H26A 240.0 240.0
H26 C26 H26B H26A 120.0 120.0
C12 C27 H27 H27A 120.0 120.1
C12 C27 H27 H27B 240.0 240.0
H27A C27 H27 H27B 120.0 119.9
C12 C27 H27A H27 240.0 239.9
C12 C27 H27A H27B 120.0 120.0
H27 C27 H27A H27B 240.0 240.1
C12 C27 H27B H27 120.0 120.0
C12 C27 H27B H27A 240.0 240.0
H27 C27 H27B H27A 119.9 120.0
H28 C28 C20 H20 62.4 299.9
H28A C28 H28 H28B 120.0 119.9
H28A C28 C20 H20 182.4 59.9
H28 C28 H28A H28B 240.0 240.0
H28B C28 C20 H20 302.4 179.8
H28 C28 H28B H28A 120.0 120.0